TCONS_00001288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001288
Unique NameTCONS_00001288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001288 ID=TCONS_00001288|Name=TCONS_00001288|organism=Clytia hemisphaerica|type=transcript|length=1300bp
TCTTTCCCTAGCAAGAGCGAATAATGAAGAATAATGATTATTTAGCAGTA
ATTTCTCCTCAATTATTTTATGGATTATTATGTAATGTCGCAATATTAAC
TCTCACTACAATTCTCACAAAACCTTGACTTCCTGTCACAACAACCTTGT
GTCtccaaatgttttatttttacagctTTTCCGAGATAAGGATTTAGCTG
CTTTCCTTTGAACCTGTATTGAACTCAGTTATTTGTTGTATTCAAGTATT
CTTATCCGAATTCGCTACAAATCCAGTGAGAAAATCACTGCTAAATATAC
TTTTTCTCAAACAACTTAAAAGGTTGACCTTGCCTTGTTACTTTGACAGG
TCTTTGCATGTTTTAGCCACCAGTTTTGAATGTTGTCAATAAAAGAAATG
TCTTTGTAGTTACCACAAACGACTTGTGATCGCCAACATCAATTTGAAAA
ACATGCTCTATAGACGTTTGCGAATAATTAAATTGTTGGAAATGATTGAT
TGTTTATAAGTTTGAAGATTCTTTGTCGAACCGCAAAAGCcattttaatt
aaaaacttCTGCTCCCGATGCCAAGAATTTTTCTGATGTTTAGAAAAGTC
CAGAAATTTCATTGGTAGCATTATTCATTTAGTGATATGATATTCTTTGC
AAATTCATCGCTGTTAGAAAAGTAGACGTAAAAAAGATTAGAGCATCGAA
AGTGTCAATCTCAgcgattttgttttctttccgGTCCTTGAATTATCACT
ATCTGCATTTTCTGTGATTTTGCTTTGTTTGCGCGAATTATTCTGCTTTA
AGCCATAGATTTTGCTTTGTTAAGTCACAGAATTGATTTAAGATTCTAGc
aagatttttaaaacattgaTCCTAAGAATCCAAACTTGTTTTTTGTCTCT
GTGATGTCACTTTCCAAAGACGCGGTATATAAAGGAAGGAATATTTGATT
CTAAGAAACGGATTTGATGATCCTTATTCTATGGAAAATTTCCAGAACAA
CAACTTGAAATCTTTTTctcttgagttttgtttatgCATACAAAGCTTTA
CATAATAACAGAGTTGCATTTTTAGCTTGCAATGCCAACTCAGCATTAGA
TTCAACAATGTAGTAGGGTCGTTCTAAAATTGGCTGAGTTTTGCATTAGA
TAAAGTGAACCCGCATTTTCTGATAATCTATCGCAGATAATCTtgatcaa
aagactttttttcgATCAACTTAATTTTGTAAGCCTCTTTGTTGTATGGA
AAGACAAATGAGTAAATGACGAATGTAATTTTCCGTCACTGTTACATCAC
Run BLAST on NCBI

transcript from alignment at sc0000007:718407..719706

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001288 ID=TCONS_00001288|Name=TCONS_00001288|organism=Clytia hemisphaerica|type=transcript|length=1300bp|location=Sequence derived from alignment at sc0000007:718407..719706 (Clytia hemisphaerica)
GTGATGTAACAGTGACGGAAAATTACATTCGTCATTTACTCATTTGTCTT TCCATACAACAAAGAGGCTTACAAAATTAAGTTGATcgaaaaaaagtctt ttgatcaAGATTATCTGCGATAGATTATCAGAAAATGCGGGTTCACTTTA TCTAATGCAAAACTCAGCCAATTTTAGAACGACCCTACTACATTGTTGAA TCTAATGCTGAGTTGGCATTGCAAGCTAAAAATGCAACTCTGTTATTATG TAAAGCTTTGTATGcataaacaaaactcaagagAAAAAGATTTCAAGTTG TTGTTCTGGAAATTTTCCATAGAATAAGGATCATCAAATCCGTTTCTTAG AATCAAATATTCCTTCCTTTATATACCGCGTCTTTGGAAAGTGACATCAC AGAGACAAAAAACAAGTTTGGATTCTTAGGAtcaatgttttaaaaatctt gCTAGAATCTTAAATCAATTCTGTGACTTAACAAAGCAAAATCTATGGCT TAAAGCAGAATAATTCGCGCAAACAAAGCAAAATCACAGAAAATGCAGAT AGTGATAATTCAAGGACcggaaagaaaacaaaatcgcTGAGATTGACACT TTCGATGCTCTAATCTTTTTTACGTCTACTTTTCTAACAGCGATGAATTT GCAAAGAATATCATATCACTAAATGAATAATGCTACCAATGAAATTTCTG GACTTTTCTAAACATCAGAAAAATTCTTGGCATCGGGAGCAGaagttttt aattaaaatgGCTTTTGCGGTTCGACAAAGAATCTTCAAACTTATAAACA ATCAATCATTTCCAACAATTTAATTATTCGCAAACGTCTATAGAGCATGT TTTTCAAATTGATGTTGGCGATCACAAGTCGTTTGTGGTAACTACAAAGA CATTTCTTTTATTGACAACATTCAAAACTGGTGGCTAAAACATGCAAAGA CCTGTCAAAGTAACAAGGCAAGGTCAACCTTTTAAGTTGTTTGAGAAAAA GTATATTTAGCAGTGATTTTCTCACTGGATTTGTAGCGAATTCGGATAAG AATACTTGAATACAACAAATAACTGAGTTCAATACAGGTTCAAAGGAAAG CAGCTAAATCCTTATCTCGGAAAagctgtaaaaataaaacatttggaGAC ACAAGGTTGTTGTGACAGGAAGTCAAGGTTTTGTGAGAATTGTAGTGAGA GTTAATATTGCGACATTACATAATAATCCATAAAATAATTGAGGAGAAAT TACTGCTAAATAATCATTATTCTTCATTATTCGCTCTTGCTAGGGAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000692XLOC_000692Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001288-exon-sc0000007-1491911889:718407..719706TCONS_00001288-exon-sc0000007-1491911889:718407..719706Clytia hemisphaericaexon
TCONS_00001288-exon-sc0000007-1510915933:718407..719706TCONS_00001288-exon-sc0000007-1510915933:718407..719706Clytia hemisphaericaexon
TCONS_00001288-exon-sc0000007-1575043694:718407..719706TCONS_00001288-exon-sc0000007-1575043694:718407..719706Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:718407..719706 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0650371 0.0634214 0.0736383 0 0.131559 0 0.250846 0.352259 0.137014 0.101828 0.0658913 0.108286 0.129762 0 0.0184651 0.0198159 0 0.0250211 0.241976 0.0723457 0.314408 0.506079 0.0372851 0.203386 0 0.0311597 0.222947 0.095174 0.108279 0.0735462
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top