TCONS_00001287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001287
Unique NameTCONS_00001287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1071

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001287 ID=TCONS_00001287|Name=TCONS_00001287|organism=Clytia hemisphaerica|type=transcript|length=1071bp
GATTAAGAGAGGAGTCTGAACTGAAAATGAACAAACTAACTATATACCGA
TACAACATCAAACAACATGCCGAGCAAGTGCAAGCCCTGATCGAGAAATA
TTTGGTACCTATGTATTATAAAAGACTTGGGATTAAAGAAAACGAAAGAT
CGAAANCGACTTTTACTCGTATTTCATGCACCATAAAATTTATTGTGGGC
GAAATTTGAGAAGGTTTTTATCTATCGTTGACGTTTTTGAACTCTTAGGA
TATAAATGGAAGTTTTATAAGATATGATTTCATGTATGTGTGATTAGAGG
AGTCTGAACTGAAAATGAACAAACTAACTATATACCGATACAACATCAAA
CAACATGCCGAGCAAGTGCAAGCCCTGATCGAGAAATATTTGGTACCTAT
GTATTATAAAAGACTTGGGATTAAAGAAAACGAAAGATCGAAATATATCC
ACGTAGAAGATTGTCTAGATCCAAAGTCAGCTGACAATCCCAAATTTGAA
GATGTTTCCTATGTCGCAATAGATGAGAATGACCGAATAGTGGGATGCAA
CATGAATTATTTCGTCACTAAACAGGATTTCCAACAAAACTTCATAAACT
TTGTAGAACAAGGTGCACAAAATAGGGAGAATCCAGAGAGTCTAAGGCGG
TTTGCAAAACATCGTTACGAAGTTTGTCACAATTTGGTCAATCTTTTCGA
TGATTACAACTTAGAGAAATTGTTTTATATCGAATCTGGTATAGTTGTTC
CAGAGTATCGTGGTGTGAAACTTTCCTTGGAGATGACTTCTAAAGCTTGT
CAACGGTTTGGTGAAGAGCATGGTATCTTATGGGAAGGGATGCTTCAGAA
TCGCCTGGTGGAATCCGGTGAAGCGAATTCTGAATTTAATGTACCAGGGA
TTGACGGATTCGTTTCGTTGAAGAAGATTCTTTCATATGATGAATACTTG
GTCAATGTGGCGTTCAGACCTCccaaaaagatttaaaagaCGTTTACTTG
TAATTTCATGTATAAACTTTTTAACGAGGAAATCATTCAAACATCTTGCT
AAATCTTGCTTTTTAGTCCCA
Run BLAST on NCBI

protein sequence of TCONS_00001287-protein

>TCONS_00001287-protein ID=TCONS_00001287-protein|Name=TCONS_00001287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MNKLTIYRYNIKQHAEQVQALIEKYLVPMYYKRLGIKENERSKYIHVEDC
LDPKSADNPKFEDVSYVAIDENDRIVGCNMNYFVTKQDFQQNFINFVEQG
AQNRENPESLRRFAKHRYEVCHNLVNLFDDYNLEKLFYIESGIVVPEYRG
VKLSLEMTSKACQRFGEEHGILWEGMLQNRLVESGEANSEFNVPGIDGFV
SLKKILSYDEYLVNVAFRPPKKI
Run BLAST on NCBI

transcript from alignment at sc0000007:709762..710832

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001287 ID=TCONS_00001287|Name=TCONS_00001287|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at sc0000007:709762..710832 (Clytia hemisphaerica)
TGGGACTAAAAAGCAAGATTTAGCAAGATGTTTGAATGATTTCCTCGTTA AAAAGTTTATACATGAAATTACAAGTAAACGtcttttaaatctttttggG AGGTCTGAACGCCACATTGACCAAGTATTCATCATATGAAAGAATCTTCT TCAACGAAACGAATCCGTCAATCCCTGGTACATTAAATTCAGAATTCGCT TCACCGGATTCCACCAGGCGATTCTGAAGCATCCCTTCCCATAAGATACC ATGCTCTTCACCAAACCGTTGACAAGCTTTAGAAGTCATCTCCAAGGAAA GTTTCACACCACGATACTCTGGAACAACTATACCAGATTCGATATAAAAC AATTTCTCTAAGTTGTAATCATCGAAAAGATTGACCAAATTGTGACAAAC TTCGTAACGATGTTTTGCAAACCGCCTTAGACTCTCTGGATTCTCCCTAT TTTGTGCACCTTGTTCTACAAAGTTTATGAAGTTTTGTTGGAAATCCTGT TTAGTGACGAAATAATTCATGTTGCATCCCACTATTCGGTCATTCTCATC TATTGCGACATAGGAAACATCTTCAAATTTGGGATTGTCAGCTGACTTTG GATCTAGACAATCTTCTACGTGGATATATTTCGATCTTTCGTTTTCTTTA ATCCCAAGTCTTTTATAATACATAGGTACCAAATATTTCTCGATCAGGGC TTGCACTTGCTCGGCATGTTGTTTGATGTTGTATCGGTATATAGTTAGTT TGTTCATTTTCAGTTCAGACTCCTCTAATCACACATACATGAAATCATAT CTTATAAAACTTCCATTTATATCCTAAGAGTTCAAAAACGTCAACGATAG ATAAAAACCTTCTCAAATTTCGCCCACAATAAATTTTATGGTGCATGAAA TACGAGTAAAAGTCGNTTTCGATCTTTCGTTTTCTTTAATCCCAAGTCTT TTATAATACATAGGTACCAAATATTTCTCGATCAGGGCTTGCACTTGCTC GGCATGTTGTTTGATGTTGTATCGGTATATAGTTAGTTTGTTCATTTTCA GTTCAGACTCCTCTCTTAATC

Coding sequence (CDS) from alignment at sc0000007:709762..710832

>TCONS_00001287 ID=TCONS_00001287|Name=TCONS_00001287|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0000007:709762..710832 (Clytia hemisphaerica)
ttaaatctttttggGAGGTCTGAACGCCACATTGACCAAGTATTCATCAT
ATGAAAGAATCTTCTTCAACGAAACGAATCCGTCAATCCCTGGTACATTA
AATTCAGAATTCGCTTCACCGGATTCCACCAGGCGATTCTGAAGCATCCC
TTCCCATAAGATACCATGCTCTTCACCAAACCGTTGACAAGCTTTAGAAG
TCATCTCCAAGGAAAGTTTCACACCACGATACTCTGGAACAACTATACCA
GATTCGATATAAAACAATTTCTCTAAGTTGTAATCATCGAAAAGATTGAC
CAAATTGTGACAAACTTCGTAACGATGTTTTGCAAACCGCCTTAGACTCT
CTGGATTCTCCCTATTTTGTGCACCTTGTTCTACAAAGTTTATGAAGTTT
TGTTGGAAATCCTGTTTAGTGACGAAATAATTCATGTTGCATCCCACTAT
TCGGTCATTCTCATCTATTGCGACATAGGAAACATCTTCAAATTTGGGAT
TGTCAGCTGACTTTGGATCTAGACAATCTTCTACGTGGATATATTTCGAT
CTTTCGTTTTCTTTAATCCCAAGTCTTTTATAATACATAGGTACCAAATA
TTTCTCGATCAGGGCTTGCACTTGCTCGGCATGTTGTTTGATGTTGTATC
GGTATATAGTTAGTTTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000691XLOC_000691Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001287-proteinTCONS_00001287-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001287-exon-sc0000007-1491911889:709762..710832TCONS_00001287-exon-sc0000007-1491911889:709762..710832Clytia hemisphaericaexon
TCONS_00001287-exon-sc0000007-1510915933:709762..710832TCONS_00001287-exon-sc0000007-1510915933:709762..710832Clytia hemisphaericaexon
TCONS_00001287-exon-sc0000007-1575043694:709762..710832TCONS_00001287-exon-sc0000007-1575043694:709762..710832Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:709762..710832 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0823149 0.16054 0.186402 0.0455914 0 0 0.211658 0.148614 0.173413 0.17184 0.041698 0.109643 4.02376 5.1168 6.7541 7.14786 3.92389 4.65522 1.26879 0.961434 4.25789 3.31908 2.02918 1.5016 2.56296 2.48457 0.564351 0.662519 4.01998 3.11833
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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