Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001287 ID=TCONS_00001287|Name=TCONS_00001287|organism=Clytia hemisphaerica|type=transcript|length=1071bp
GATTAAGAGAGGAGTCTGAACTGAAAATGAACAAACTAACTATATACCGA
TACAACATCAAACAACATGCCGAGCAAGTGCAAGCCCTGATCGAGAAATA
TTTGGTACCTATGTATTATAAAAGACTTGGGATTAAAGAAAACGAAAGAT
CGAAANCGACTTTTACTCGTATTTCATGCACCATAAAATTTATTGTGGGC
GAAATTTGAGAAGGTTTTTATCTATCGTTGACGTTTTTGAACTCTTAGGA
TATAAATGGAAGTTTTATAAGATATGATTTCATGTATGTGTGATTAGAGG
AGTCTGAACTGAAAATGAACAAACTAACTATATACCGATACAACATCAAA
CAACATGCCGAGCAAGTGCAAGCCCTGATCGAGAAATATTTGGTACCTAT
GTATTATAAAAGACTTGGGATTAAAGAAAACGAAAGATCGAAATATATCC
ACGTAGAAGATTGTCTAGATCCAAAGTCAGCTGACAATCCCAAATTTGAA
GATGTTTCCTATGTCGCAATAGATGAGAATGACCGAATAGTGGGATGCAA
CATGAATTATTTCGTCACTAAACAGGATTTCCAACAAAACTTCATAAACT
TTGTAGAACAAGGTGCACAAAATAGGGAGAATCCAGAGAGTCTAAGGCGG
TTTGCAAAACATCGTTACGAAGTTTGTCACAATTTGGTCAATCTTTTCGA
TGATTACAACTTAGAGAAATTGTTTTATATCGAATCTGGTATAGTTGTTC
CAGAGTATCGTGGTGTGAAACTTTCCTTGGAGATGACTTCTAAAGCTTGT
CAACGGTTTGGTGAAGAGCATGGTATCTTATGGGAAGGGATGCTTCAGAA
TCGCCTGGTGGAATCCGGTGAAGCGAATTCTGAATTTAATGTACCAGGGA
TTGACGGATTCGTTTCGTTGAAGAAGATTCTTTCATATGATGAATACTTG
GTCAATGTGGCGTTCAGACCTCccaaaaagatttaaaagaCGTTTACTTG
TAATTTCATGTATAAACTTTTTAACGAGGAAATCATTCAAACATCTTGCT
AAATCTTGCTTTTTAGTCCCA Run BLAST on NCBI protein sequence of TCONS_00001287-protein >TCONS_00001287-protein ID=TCONS_00001287-protein|Name=TCONS_00001287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MNKLTIYRYNIKQHAEQVQALIEKYLVPMYYKRLGIKENERSKYIHVEDC
LDPKSADNPKFEDVSYVAIDENDRIVGCNMNYFVTKQDFQQNFINFVEQG
AQNRENPESLRRFAKHRYEVCHNLVNLFDDYNLEKLFYIESGIVVPEYRG
VKLSLEMTSKACQRFGEEHGILWEGMLQNRLVESGEANSEFNVPGIDGFV
SLKKILSYDEYLVNVAFRPPKKI Run BLAST on NCBI transcript from alignment at sc0000007:709762..710832 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001287 ID=TCONS_00001287|Name=TCONS_00001287|organism=Clytia hemisphaerica|type=transcript|length=1071bp|location=Sequence derived from alignment at sc0000007:709762..710832 (Clytia hemisphaerica)
TGGGACTAAAAAGCAAGATTTAGCAAGATGTTTGAATGATTTCCTCGTTA
AAAAGTTTATACATGAAATTACAAGTAAACGtcttttaaatctttttggG
AGGTCTGAACGCCACATTGACCAAGTATTCATCATATGAAAGAATCTTCT
TCAACGAAACGAATCCGTCAATCCCTGGTACATTAAATTCAGAATTCGCT
TCACCGGATTCCACCAGGCGATTCTGAAGCATCCCTTCCCATAAGATACC
ATGCTCTTCACCAAACCGTTGACAAGCTTTAGAAGTCATCTCCAAGGAAA
GTTTCACACCACGATACTCTGGAACAACTATACCAGATTCGATATAAAAC
AATTTCTCTAAGTTGTAATCATCGAAAAGATTGACCAAATTGTGACAAAC
TTCGTAACGATGTTTTGCAAACCGCCTTAGACTCTCTGGATTCTCCCTAT
TTTGTGCACCTTGTTCTACAAAGTTTATGAAGTTTTGTTGGAAATCCTGT
TTAGTGACGAAATAATTCATGTTGCATCCCACTATTCGGTCATTCTCATC
TATTGCGACATAGGAAACATCTTCAAATTTGGGATTGTCAGCTGACTTTG
GATCTAGACAATCTTCTACGTGGATATATTTCGATCTTTCGTTTTCTTTA
ATCCCAAGTCTTTTATAATACATAGGTACCAAATATTTCTCGATCAGGGC
TTGCACTTGCTCGGCATGTTGTTTGATGTTGTATCGGTATATAGTTAGTT
TGTTCATTTTCAGTTCAGACTCCTCTAATCACACATACATGAAATCATAT
CTTATAAAACTTCCATTTATATCCTAAGAGTTCAAAAACGTCAACGATAG
ATAAAAACCTTCTCAAATTTCGCCCACAATAAATTTTATGGTGCATGAAA
TACGAGTAAAAGTCGNTTTCGATCTTTCGTTTTCTTTAATCCCAAGTCTT
TTATAATACATAGGTACCAAATATTTCTCGATCAGGGCTTGCACTTGCTC
GGCATGTTGTTTGATGTTGTATCGGTATATAGTTAGTTTGTTCATTTTCA
GTTCAGACTCCTCTCTTAATC Coding sequence (CDS) from alignment at sc0000007:709762..710832 >TCONS_00001287 ID=TCONS_00001287|Name=TCONS_00001287|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0000007:709762..710832 (Clytia hemisphaerica)
ttaaatctttttggGAGGTCTGAACGCCACATTGACCAAGTATTCATCAT
ATGAAAGAATCTTCTTCAACGAAACGAATCCGTCAATCCCTGGTACATTA
AATTCAGAATTCGCTTCACCGGATTCCACCAGGCGATTCTGAAGCATCCC
TTCCCATAAGATACCATGCTCTTCACCAAACCGTTGACAAGCTTTAGAAG
TCATCTCCAAGGAAAGTTTCACACCACGATACTCTGGAACAACTATACCA
GATTCGATATAAAACAATTTCTCTAAGTTGTAATCATCGAAAAGATTGAC
CAAATTGTGACAAACTTCGTAACGATGTTTTGCAAACCGCCTTAGACTCT
CTGGATTCTCCCTATTTTGTGCACCTTGTTCTACAAAGTTTATGAAGTTT
TGTTGGAAATCCTGTTTAGTGACGAAATAATTCATGTTGCATCCCACTAT
TCGGTCATTCTCATCTATTGCGACATAGGAAACATCTTCAAATTTGGGAT
TGTCAGCTGACTTTGGATCTAGACAATCTTCTACGTGGATATATTTCGAT
CTTTCGTTTTCTTTAATCCCAAGTCTTTTATAATACATAGGTACCAAATA
TTTCTCGATCAGGGCTTGCACTTGCTCGGCATGTTGTTTGATGTTGTATC
GGTATATAGTTAGTTTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001287-exon-sc0000007-1491911889:709762..710832 | TCONS_00001287-exon-sc0000007-1491911889:709762..710832 | Clytia hemisphaerica | exon |
| TCONS_00001287-exon-sc0000007-1510915933:709762..710832 | TCONS_00001287-exon-sc0000007-1510915933:709762..710832 | Clytia hemisphaerica | exon |
| TCONS_00001287-exon-sc0000007-1575043694:709762..710832 | TCONS_00001287-exon-sc0000007-1575043694:709762..710832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:709762..710832 . |
Blast
The following BLAST results are available for this feature:
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