TCONS_00001279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001279
Unique NameTCONS_00001279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001279 ID=TCONS_00001279|Name=TCONS_00001279|organism=Clytia hemisphaerica|type=transcript|length=948bp
CACAAATAAAATAATGAGGATTATTAAGGATAAAGTCGAATGTAGTTCTT
AATTTCTCTCTTCGCATTCTGTCTGGTGACCCAgtgttatttttttctca
aaaagtatTCAGTtagtaaaaaaaagaagataaaaatttggaaatataaa
aaacgtaaaactgcaaataaatatttcaaaataaaaaactacaAAAGAAA
TGACGAGGTCAACCATCATTGGGTTTCTTCTTTTTCCGTAGGACGAACAT
CCTACATGAGAAACTGGCCGTCCTCACACAATTACTGAGTTTAGGGAAAG
AATGATATTTTGCAAAGCAGTGGTCAATCTTTTTGCGACATTTACTCCTC
TCTTTCTTGGTGTAAGTGTAACTGCATGCTTGTATACATTCTTCTTTGTT
CACGTGACACGTCCGAAAACTTCGCACCTCCGTACTCGAAAAATTGCAAT
GTTCAAAAATCATACGACATTTTGTGTGACATACAGCCAAAGGTTTGGTA
GAAGTATCTTTGAAAAACAGGACAAACAAAACTAGAAAGGTCTGTTGCAA
CATTTCTGTCCAATAAAAATATCTTCCGACcgaaaacaaaactttcaatt
tccCTGCTTAGTTGTCTGCACTTTCGTAAAACATAATGTCAACTATTTAC
AAAGCAGGCTGGCTAACCGTTCTTTAATCATCGATTATAGATGAGACAAT
TATCCTTCCTTGACCACGTGATCAAATGCATCCAATTAGAGCACAATAGA
GCAAGATTAGTGGCAATAACATGTTCTCTCTTTATATTTACTCAGAAAGA
GTCAATCAAAAGACCCTCTTTATCATGTGGTGAAAAGTAGTTCCGGTCGC
GCAGCTTTTGCAGATGAATAAAACCTCTACTTTTTATCTCAAAAGGCACC
CATCATAATCAACACCCTTTGAAAGAGATCTCAGAGAACAGCAGGAAC
Run BLAST on NCBI

protein sequence of Putative cnidarian restricted secreted protein

>TCONS_00001279-protein ID=TCONS_00001279-protein|Name=Putative cnidarian restricted secreted protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MLQQTFLVLFVLFFKDTSTKPLAVCHTKCRMIFEHCNFSSTEVRSFRTCH
VNKEECIQACSYTYTKKERSKCRKKIDHCFAKYHSFPKLSNCVRTASFSC
RMFVLRKKKKPNDG
Run BLAST on NCBI

transcript from alignment at sc0000007:378365..379312

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001279 ID=TCONS_00001279|Name=TCONS_00001279|organism=Clytia hemisphaerica|type=transcript|length=948bp|location=Sequence derived from alignment at sc0000007:378365..379312 (Clytia hemisphaerica)
GTTCCTGCTGTTCTCTGAGATCTCTTTCAAAGGGTGTTGATTATGATGGG TGCCTTTTGAGATAAAAAGTAGAGGTTTTATTCATCTGCAAAAGCTGCGC GACCGGAACTACTTTTCACCACATGATAAAGAGGGTCTTTTGATTGACTC TTTCTGAGTAAATATAAAGAGAGAACATGTTATTGCCACTAATCTTGCTC TATTGTGCTCTAATTGGATGCATTTGATCACGTGGTCAAGGAAGGATAAT TGTCTCATCTATAATCGATGATTAAAGAACGGTTAGCCAGCCTGCTTTGT AAATAGTTGACATTATGTTTTACGAAAGTGCAGACAACTAAGCAGggaaa ttgaaagttttgttttcgGTCGGAAGATATTTTTATTGGACAGAAATGTT GCAACAGACCTTTCTAGTTTTGTTTGTCCTGTTTTTCAAAGATACTTCTA CCAAACCTTTGGCTGTATGTCACACAAAATGTCGTATGATTTTTGAACAT TGCAATTTTTCGAGTACGGAGGTGCGAAGTTTTCGGACGTGTCACGTGAA CAAAGAAGAATGTATACAAGCATGCAGTTACACTTACACCAAGAAAGAGA GGAGTAAATGTCGCAAAAAGATTGACCACTGCTTTGCAAAATATCATTCT TTCCCTAAACTCAGTAATTGTGTGAGGACGGCCAGTTTCTCATGTAGGAT GTTCGTCCTACGGAAAAAGAAGAAACCCAATGATGGTTGACCTCGTCATT TCTTTtgtagttttttattttgaaatatttatttgcagttttacgttttt tatatttccaaatttttatcttcttttttttactaACTGAatactttttg agaaaaaaataacacTGGGTCACCAGACAGAATGCGAAGAGAGAAATTAA GAACTACATTCGACTTTATCCTTAATAATCCTCATTATTTTATTTGTG

Coding sequence (CDS) from alignment at sc0000007:378365..379312

>TCONS_00001279 ID=TCONS_00001279|Name=TCONS_00001279|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000007:378365..379312 (Clytia hemisphaerica)
ATGTTGCAACAGACCTTTCTAGTTTTGTTTGTCCTGTTTTTCAAAGATAC
TTCTACCAAACCTTTGGCTGTATGTCACACAAAATGTCGTATGATTTTTG
AACATTGCAATTTTTCGAGTACGGAGGTGCGAAGTTTTCGGACGTGTCAC
GTGAACAAAGAAGAATGTATACAAGCATGCAGTTACACTTACACCAAGAA
AGAGAGGAGTAAATGTCGCAAAAAGATTGACCACTGCTTTGCAAAATATC
ATTCTTTCCCTAAACTCAGTAATTGTGTGAGGACGGCCAGTTTCTCATGT
AGGATGTTCGTCCTACGGAAAAAGAAGAAACCCAATGATGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000683XLOC_000683Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Putative cnidarian restricted secreted proteinTCONS_00001279-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001279-exon-sc0000007-1491911889:378365..379312TCONS_00001279-exon-sc0000007-1491911889:378365..379312Clytia hemisphaericaexon
TCONS_00001279-exon-sc0000007-1510915933:378365..379312TCONS_00001279-exon-sc0000007-1510915933:378365..379312Clytia hemisphaericaexon
TCONS_00001279-exon-sc0000007-1575043694:378365..379312TCONS_00001279-exon-sc0000007-1575043694:378365..379312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:378365..379312 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0480078 0.0468151 0.0543569 0 11.4592 8.64593 0.925824 0.635613 0.121366 0.250552 0 0.0319729 2.36271 3.3158 6.84236 5.93868 0.216236 0.591025 0.408267 0.320416 0.0928333 0.135842 0 0 0 0.0460016 0 0.140507 0.10657 0.0542889
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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