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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001279 ID=TCONS_00001279|Name=TCONS_00001279|organism=Clytia hemisphaerica|type=transcript|length=948bp
CACAAATAAAATAATGAGGATTATTAAGGATAAAGTCGAATGTAGTTCTT
AATTTCTCTCTTCGCATTCTGTCTGGTGACCCAgtgttatttttttctca
aaaagtatTCAGTtagtaaaaaaaagaagataaaaatttggaaatataaa
aaacgtaaaactgcaaataaatatttcaaaataaaaaactacaAAAGAAA
TGACGAGGTCAACCATCATTGGGTTTCTTCTTTTTCCGTAGGACGAACAT
CCTACATGAGAAACTGGCCGTCCTCACACAATTACTGAGTTTAGGGAAAG
AATGATATTTTGCAAAGCAGTGGTCAATCTTTTTGCGACATTTACTCCTC
TCTTTCTTGGTGTAAGTGTAACTGCATGCTTGTATACATTCTTCTTTGTT
CACGTGACACGTCCGAAAACTTCGCACCTCCGTACTCGAAAAATTGCAAT
GTTCAAAAATCATACGACATTTTGTGTGACATACAGCCAAAGGTTTGGTA
GAAGTATCTTTGAAAAACAGGACAAACAAAACTAGAAAGGTCTGTTGCAA
CATTTCTGTCCAATAAAAATATCTTCCGACcgaaaacaaaactttcaatt
tccCTGCTTAGTTGTCTGCACTTTCGTAAAACATAATGTCAACTATTTAC
AAAGCAGGCTGGCTAACCGTTCTTTAATCATCGATTATAGATGAGACAAT
TATCCTTCCTTGACCACGTGATCAAATGCATCCAATTAGAGCACAATAGA
GCAAGATTAGTGGCAATAACATGTTCTCTCTTTATATTTACTCAGAAAGA
GTCAATCAAAAGACCCTCTTTATCATGTGGTGAAAAGTAGTTCCGGTCGC
GCAGCTTTTGCAGATGAATAAAACCTCTACTTTTTATCTCAAAAGGCACC
CATCATAATCAACACCCTTTGAAAGAGATCTCAGAGAACAGCAGGAAC Run BLAST on NCBI protein sequence of Putative cnidarian restricted secreted protein >TCONS_00001279-protein ID=TCONS_00001279-protein|Name=Putative cnidarian restricted secreted protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MLQQTFLVLFVLFFKDTSTKPLAVCHTKCRMIFEHCNFSSTEVRSFRTCH
VNKEECIQACSYTYTKKERSKCRKKIDHCFAKYHSFPKLSNCVRTASFSC
RMFVLRKKKKPNDG Run BLAST on NCBI transcript from alignment at sc0000007:378365..379312 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001279 ID=TCONS_00001279|Name=TCONS_00001279|organism=Clytia hemisphaerica|type=transcript|length=948bp|location=Sequence derived from alignment at sc0000007:378365..379312 (Clytia hemisphaerica)
GTTCCTGCTGTTCTCTGAGATCTCTTTCAAAGGGTGTTGATTATGATGGG
TGCCTTTTGAGATAAAAAGTAGAGGTTTTATTCATCTGCAAAAGCTGCGC
GACCGGAACTACTTTTCACCACATGATAAAGAGGGTCTTTTGATTGACTC
TTTCTGAGTAAATATAAAGAGAGAACATGTTATTGCCACTAATCTTGCTC
TATTGTGCTCTAATTGGATGCATTTGATCACGTGGTCAAGGAAGGATAAT
TGTCTCATCTATAATCGATGATTAAAGAACGGTTAGCCAGCCTGCTTTGT
AAATAGTTGACATTATGTTTTACGAAAGTGCAGACAACTAAGCAGggaaa
ttgaaagttttgttttcgGTCGGAAGATATTTTTATTGGACAGAAATGTT
GCAACAGACCTTTCTAGTTTTGTTTGTCCTGTTTTTCAAAGATACTTCTA
CCAAACCTTTGGCTGTATGTCACACAAAATGTCGTATGATTTTTGAACAT
TGCAATTTTTCGAGTACGGAGGTGCGAAGTTTTCGGACGTGTCACGTGAA
CAAAGAAGAATGTATACAAGCATGCAGTTACACTTACACCAAGAAAGAGA
GGAGTAAATGTCGCAAAAAGATTGACCACTGCTTTGCAAAATATCATTCT
TTCCCTAAACTCAGTAATTGTGTGAGGACGGCCAGTTTCTCATGTAGGAT
GTTCGTCCTACGGAAAAAGAAGAAACCCAATGATGGTTGACCTCGTCATT
TCTTTtgtagttttttattttgaaatatttatttgcagttttacgttttt
tatatttccaaatttttatcttcttttttttactaACTGAatactttttg
agaaaaaaataacacTGGGTCACCAGACAGAATGCGAAGAGAGAAATTAA
GAACTACATTCGACTTTATCCTTAATAATCCTCATTATTTTATTTGTG Coding sequence (CDS) from alignment at sc0000007:378365..379312 >TCONS_00001279 ID=TCONS_00001279|Name=TCONS_00001279|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000007:378365..379312 (Clytia hemisphaerica)
ATGTTGCAACAGACCTTTCTAGTTTTGTTTGTCCTGTTTTTCAAAGATAC
TTCTACCAAACCTTTGGCTGTATGTCACACAAAATGTCGTATGATTTTTG
AACATTGCAATTTTTCGAGTACGGAGGTGCGAAGTTTTCGGACGTGTCAC
GTGAACAAAGAAGAATGTATACAAGCATGCAGTTACACTTACACCAAGAA
AGAGAGGAGTAAATGTCGCAAAAAGATTGACCACTGCTTTGCAAAATATC
ATTCTTTCCCTAAACTCAGTAATTGTGTGAGGACGGCCAGTTTCTCATGT
AGGATGTTCGTCCTACGGAAAAAGAAGAAACCCAATGATGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001279-exon-sc0000007-1491911889:378365..379312 | TCONS_00001279-exon-sc0000007-1491911889:378365..379312 | Clytia hemisphaerica | exon |
| TCONS_00001279-exon-sc0000007-1510915933:378365..379312 | TCONS_00001279-exon-sc0000007-1510915933:378365..379312 | Clytia hemisphaerica | exon |
| TCONS_00001279-exon-sc0000007-1575043694:378365..379312 | TCONS_00001279-exon-sc0000007-1575043694:378365..379312 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:378365..379312 . |
Blast
The following BLAST results are available for this feature:
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