TCONS_00001274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001274
Unique NameTCONS_00001274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length769

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001274 ID=TCONS_00001274|Name=TCONS_00001274|organism=Clytia hemisphaerica|type=transcript|length=769bp
aaaataaacaaaGCAATTTGTTGGTTAGAAAGTTTTTCTCATCCTTTAAA
AATCATCATAACAGTTAAATATGTGCATTACAAAATTTTGTGCTTCTAAA
TTCTATATTTTATACTTCTTTGACATTAATTTACATATCCACAATAAATA
ATTAccattttacaaaaattgaacaaacaaaaagaatttttataaaaatt
aatcATTGATGAAAGATTACAGTCTGTATTTACTGGTGAGGTGAAGCTTG
GAATGCTTACGATAACATCTAGTTTGTACTTTGCAAAGTTTTCGACTTTC
AATACAGACAAAGGAATGATAAAATCCTCTCATGTTCACAaaacattcat
cgaagtcacttTTGCACACATCTTTGCAACGTTGATTGAACGTCTTTCCA
CTTGGACGACATTGGTTCATACAGCCAGCATATCCTATATGACAAGGGAA
CTTCAAACTAGGAAAGTTTTCTGGTATACCCTTTTCACATGAGTGGTATT
GGTTTGCACAGTTTTGCTCACATTTCTCGGTACTGTCTGCACTTTTGGTC
TCCTCGAAGAAACAATTGGCGAATTGTTTGGAGAGATTGATGGCATGTTT
GAAGACATGGCTTGGATCTTCCAACGCCTTCTTATTAAACGTTTTGATGG
CGTCATTCGAACAGCTACATCGTACACCACATACCAAATACATCAATATT
GTGTAAAAGATCACTCCCATGTTTCCGTTCATTGTtagttgaaaatttct
tcccttcttTCAATGTCCA
Run BLAST on NCBI

protein sequence of TCONS_00001274-protein

>TCONS_00001274-protein ID=TCONS_00001274-protein|Name=TCONS_00001274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MNGNMGVIFYTILMYLVCGVRCSCSNDAIKTFNKKALEDPSHVFKHAINL
SKQFANCFFEETKSADSTEKCEQNCANQYHSCEKGIPENFPSLKFPCHIG
YAGCMNQCRPSGKTFNQRCKDVCKSDFDECFVNMRGFYHSFVCIESRKLC
KVQTRCYRKHSKLHLTSKYRL
Run BLAST on NCBI

transcript from alignment at sc0000007:125613..126381

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001274 ID=TCONS_00001274|Name=TCONS_00001274|organism=Clytia hemisphaerica|type=transcript|length=769bp|location=Sequence derived from alignment at sc0000007:125613..126381 (Clytia hemisphaerica)
TGGACATTGAaagaagggaagaaattttcaactaACAATGAACGGAAACA
TGGGAGTGATCTTTTACACAATATTGATGTATTTGGTATGTGGTGTACGA
TGTAGCTGTTCGAATGACGCCATCAAAACGTTTAATAAGAAGGCGTTGGA
AGATCCAAGCCATGTCTTCAAACATGCCATCAATCTCTCCAAACAATTCG
CCAATTGTTTCTTCGAGGAGACCAAAAGTGCAGACAGTACCGAGAAATGT
GAGCAAAACTGTGCAAACCAATACCACTCATGTGAAAAGGGTATACCAGA
AAACTTTCCTAGTTTGAAGTTCCCTTGTCATATAGGATATGCTGGCTGTA
TGAACCAATGTCGTCCAAGTGGAAAGACGTTCAATCAACGTTGCAAAGAT
GTGTGCAAaagtgacttcgatgaatgtttTGTGAACATGAGAGGATTTTA
TCATTCCTTTGTCTGTATTGAAAGTCGAAAACTTTGCAAAGTACAAACTA
GATGTTATCGTAAGCATTCCAAGCTTCACCTCACCAGTAAATACAGACTG
TAATCTTTCATCAATgattaatttttataaaaattctttttgtttgttca
atttttgtaaaatggTAATTATTTATTGTGGATATGTAAATTAATGTCAA
AGAAGTATAAAATATAGAATTTAGAAGCACAAAATTTTGTAATGCACATA
TTTAACTGTTATGATGATTTTTAAAGGATGAGAAAAACTTTCTAACCAAC
AAATTGCtttgtttatttt

Coding sequence (CDS) from alignment at sc0000007:125613..126381

>TCONS_00001274 ID=TCONS_00001274|Name=TCONS_00001274|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at sc0000007:125613..126381 (Clytia hemisphaerica)
ATGAACGGAAACATGGGAGTGATCTTTTACACAATATTGATGTATTTGGT
ATGTGGTGTACGATGTAGCTGTTCGAATGACGCCATCAAAACGTTTAATA
AGAAGGCGTTGGAAGATCCAAGCCATGTCTTCAAACATGCCATCAATCTC
TCCAAACAATTCGCCAATTGTTTCTTCGAGGAGACCAAAAGTGCAGACAG
TACCGAGAAATGTGAGCAAAACTGTGCAAACCAATACCACTCATGTGAAA
AGGGTATACCAGAAAACTTTCCTAGTTTGAAGTTCCCTTGTCATATAGGA
TATGCTGGCTGTATGAACCAATGTCGTCCAAGTGGAAAGACGTTCAATCA
ACGTTGCAAAGATGTGTGCAAaagtgacttcgatgaatgtttTGTGAACA
TGAGAGGATTTTATCATTCCTTTGTCTGTATTGAAAGTCGAAAACTTTGC
AAAGTACAAACTAGATGTTATCGTAAGCATTCCAAGCTTCACCTCACCAG
TAAATACAGACTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000678XLOC_000678Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001274-proteinTCONS_00001274-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001274-exon-sc0000007-1491911889:125613..126381TCONS_00001274-exon-sc0000007-1491911889:125613..126381Clytia hemisphaericaexon
TCONS_00001274-exon-sc0000007-1510915933:125613..126381TCONS_00001274-exon-sc0000007-1510915933:125613..126381Clytia hemisphaericaexon
TCONS_00001274-exon-sc0000007-1575043694:125613..126381TCONS_00001274-exon-sc0000007-1575043694:125613..126381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:125613..126381 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190059	0.185338	0.43039	0.210535	1.28153	0.675121	0	0.152506	0.266932	0.330639	0	0.0843856	1.55896	6.21346	5.21623	4.28522	0.808502	0.292478	5.05093	8.66812	0.0612534	0.0896318	0	0.0660398	0	0.121411	0	0.278129	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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