TCONS_00001267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001267
Unique NameTCONS_00001267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001267 ID=TCONS_00001267|Name=TCONS_00001267|organism=Clytia hemisphaerica|type=transcript|length=1122bp
TTTAGAGAATCATGTGGTGAAAAAACCATTAAACGTTTGGTGGAAGACGC
TCATAGATATGGAATTGAAAAGGTGCATTGCTACGATGAACCCTTGATGG
TAAAAAGTGTATTATGTGCGAAATACCCAGATGCTAGAGAGTGCCAGCCG
GTCAACGCAAGTAAAGTCGAAAGCTGGAAAGAAGCGACCATAGCCCTGAT
TGCTGTTTCGTGTGTTTTATTCATCGCTGTCATCCTTCTCCTCGTCTTGT
ACAATCGACGAAGAATGGATTCGTCTACCTACAAACGAGACATCGATACA
TAGAGACATCCATCCATCTTTGATAttggttgatatttgttttgttgacg
AACGGTTGAAATTACACCTGATTTTGAATGCGGGTGATGCCGGGGAATAT
AAAGCATACGTGGCTATAGATTGATCTTCATTTGGTAGCACTATTACTGG
CATTTTACAGAACCTTTTTTTAATCATCACAACCCCGCCTTAAAACATGC
TATTCTTATAGGTTTAACGAACTAACGTTATTAAATCAACTACCATTTGT
CAAAGACTTTCTTTTTACGATTTTacgtttttgaaagaaaaattacaaca
TGTTTTGAGGGgttgtgtgtgtgtgtttcaagggtactcaaaaaaacaaa
actgaaaatgCCAAACTTTCGCACTACAAACGAtgcatttcattgttttt
attcttGTTCAGTTATTACTTTATTTCATCCATTAAATTAACCTTTtgtt
ttgtaaatttatttttctattatGGTTTTATACAACATAGCTTTTTTTTA
CGATTGAGGAATACTACTTTAAGTCATGTAATTATTTGTAATTTTGTCTG
AAAATTTTATATTAGATAAATTTAATTTACGAAAATCTTTAAGAATacaa
aaaattaagtattttcactaaataacttttaattaaccttttgttttata
aatttatttttctattatGGTTTTTATACAACAGTTTCTTTTTTACGATT
GAGGAATACTACTTTAAGTCATGTAATTATTTGTAATTTTGtcttaaaat
tttatattaGATAAATTTAATTTACGAAAATCTTTAAGAATacaaaaaat
taagtattttCACTAAATAACT
Run BLAST on NCBI

protein sequence of TCONS_00001267-protein

>TCONS_00001267-protein ID=TCONS_00001267-protein|Name=TCONS_00001267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
FRESCGEKTIKRLVEDAHRYGIEKVHCYDEPLMVKSVLCAKYPDARECQP
VNASKVESWKEATIALIAVSCVLFIAVILLLVLYNRRRMDSSTYKRDIDT
Run BLAST on NCBI

transcript from alignment at sc0000007:1414730..1417740-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001267 ID=TCONS_00001267|Name=TCONS_00001267|organism=Clytia hemisphaerica|type=transcript|length=3011bp|location=Sequence derived from alignment at sc0000007:1414730..1417740- (Clytia hemisphaerica)
TTTAGAGAATCATGTGGTGAAAAAACCATTAAACGTTTGGTGGAAGACGC
TCATAGATATGGAATTGAAAAGGTGCATTGCTACGATGAACCCTTGTAAG
AATAATTTATTTTTTAAGGATTGAGATTTTTAGAAAAGTTTTTCAGAATA
TAAAAAACTAATTTTATTCATCTGAGAACAAGCCATTCTCCAAAACCTTT
TATTGAAATGTTCTCTCTACTTGCGTTTGTTTGTTGATTAGCATTCTGGG
TCCTCTTTAGGAGGGTGAACTGTATTAAAGTTATTTTTGTGCACATCCGA
TAATACTTTTAATAGTCACCTTTTTTATCTACCCTTGAAAATATGGAGAA
AAAAACACTGCTTCATTTTCTCGTAGGATGGTAAAAAGTGTATTATGTGC
GAAATACCCAGATGCTAGAGAGTGCCAGCCGGTCAACGCAAGTAAAGTCG
AAAGGTATTGTTTTCTTTCCTTCATTCTTTATCTTTATTGTTTTTTCTTC
GAAAATTTTCTCCCGGCAAAGATGTTTCTTGAAAAACAGGAAGATATTAG
GCTACGTCATATCTTCCATCATTTCGAGCGTAAAACTCCAACTCTTTCAG
ATATGAGCACTGCTCTTGTTTTGAATATTTAATTTCTCCGAATACATCAC
ATGTGCACTGAGGTTTTGATGAAANGCACTTTTTGAAAGTTACTTTTTAA
ATCAAGCGAGCATAACTTTTGATCTAATAAACCAAATTTAATAAATGATC
CATCAAAATTAATCTTCCTTCTTTACGATGAAAAAAGATTCGTTCTTTCA
AAAATTTTAGATCTCGGGAAAGTTCACTTTAATAAAGAGAGAAACTTTTT
TGTGGCGCACCCGGTAGGAAATTTTCAGTTTTCGGTTTTAGTTATATAGC
TAAGTAAGTCGGCTAAGTATTCTTTCTAAATCTTTATTTTTAGAGAATCA
TGTGGTGAAAAAACCATTAAACGTTTGGTGGAAGACGCTCATAGATATGG
AATTGAAAAGGTGCATTGCTACGATGAACCCTTGTAAGAATAATTTATTT
TTTAAGGATTGAGATTTTTAGAAAAGTTTTTCAGAATATAAAAAACTAAT
TTTATTCATCTGAGAACAAGCCATTCTCCAAAACCTTTTATTGAAATGTT
CTCCCTACTTGCGTTTGTTTGTTGATTAGCATTCTGGGTCCTCTTTAGGA
GGGTGAACTGTATTAAAGTTATTTTTGTGCACATCCGATAATACTTTTAA
TAGTCACCTTTTTTATCTACCCTTGAAAATATGGAGAAAAAAACACTGCT
TCATTTTCTCGTAGGATGGTAAAAAGTGTATTATGTGCGAAATACCCAGA
TGCTAGAGAGTGCCAGCCGGTCAACGCAAGTAAAGTCGAAAGGTATTGTT
TTCTTTCCTTCATTCTTTATCTTTATTGTTTTTTCTTCGAAAATTTTCTC
CCGGCAAAGATGTTTCTTGAAAAAACAGGAAGATATGAGATAAATCTTTC
ACCAAAAATTTGATTATGGTCTTGTTGTTCCAAATCAAAGTTTTTTTTAT
TTGAAACCCTTTTGTCTCATTATCTTTTCCTTGGGCGAAAGTAAACGCTC
TTGATATTCCTTCTTCAGAACATTGGTTTTTTAAATAAAGCCAATAGAAA
TCTTAACACGCCAGAAATTGATAATTGAATATAACTGAATCTAAACAGAG
AATAGAATTGAAGAGCAAGAGTGGTTTTAGATTGGAGATAAAAAATATGA
ATTTGTAGATATTCATACAGCTGCATAAGTTGTCATTGCACCTTGGAGAA
TAGATAACCATCTATTTTAAATCACCTTTTTTTTAACATAATGGTTATCA
CAAAAAACCTCTGAAATTCGCTTGCCAAAAGTTTTTCTGCTCTAAATCCA
AAAATACATTAAAACTGATGAAAACTGTGTTGCTAATTTGATTCCCTTGG
AAAATAAAACAATAACAAGATCTCTCTGCTTTTTCAAAAATTATTGGTGA
ATCTTGATCATTCTATATAACAAAGCATCTGGTATTTACTCTAACCTCTT
TTCAATTTACAGCTGGAAAGAAGCGACCATAGCCCTGATTGCTGTTTCGT
GTGTTTTATTCATCGCTGTCATCCTTCTCCTCGTCTTGTACAATCGACGA
AGAATGGATTCGTCTACCTACAAACGAGACATCGATACATAGAGACATCC
ATCCATCTTTGATATTGGTTGATATTTGTTTTGTTGACGAACGGTTGAAA
TTACACCTGATTTTGAATGCGGGTGATGCCGGGGAATATAAAGCATACGT
GGCTATAGATTGATCTTCATTTGGTAGCACTATTACTGGCATTTTACAGA
ACCTTTTTTTAATCATCACAACCCCGCCTTAAAACATGCTATTCTTATAG
GTTTAACGAACTAACGTTATTAAATCAACTACCATTTGTCAAAGACTTTC
TTTTTACGATTTTACGTTTTTGAAAGAAAAATTACAACATGTTTTGAGGG
GTTGTGTGTGTGTGTTTCAAGGGTACTCAAAAAAACAAAACTGAAAATGC
CAAACTTTCGCACTACAAACGATGCATTTCATTGTTTTTATTCTTGTTCA
GTTATTACTTTATTTCATCCATTAAATTAACCTTTTGTTTTGTAAATTTA
TTTTTCTATTATGGTTTTATACAACATAGCTTTTTTTTACGATTGAGGAA
TACTACTTTAAGTCATGTAATTATTTGTAATTTTGTCTGAAAATTTTATA
TTAGATAAATTTAATTTACGAAAATCTTTAAGAATACAAAAAATTAAGTA
TTTTCACTAAATAACTTTTAATTAACCTTTTGTTTTATAAATTTATTTTT
CTATTATGGTTTTTATACAACAGTTTCTTTTTTACGATTGAGGAATACTA
CTTTAAGTCATGTAATTATTTGTAATTTTGTCTTAAAATTTTATATTAGA
TAAATTTAATTTACGAAAATCTTTAAGAATACAAAAAATTAAGTATTTTC
ACTAAATAACT

Coding sequence (CDS) from alignment at sc0000007:1414730..1417740-

>TCONS_00001267 ID=TCONS_00001267|Name=TCONS_00001267|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at sc0000007:1414730..1417740- (Clytia hemisphaerica)
CTGGAAAGAAGCGACCATAGCCCTGATTGCTGTTTCGTGTGTTTTATTCA
TCGCTGTCATCCTTCTCCTCGTCTTGTACAATCGACGAAGAATGGATTCG
TCTACCTACAAACGAGACATCGATACATAGGATGGTAAAAAGTGTATTAT
GTGCGAAATACCCAGATGCTAGAGAGTGCCAGCCGGTCAACGCAAGTAAA
GTCGAAAGTTTAGAGAATCATGTGGTGAAAAAACCATTAAACGTTTGGTG
GAAGACGCTCATAGATATGGAATTGAAAAGGTGCATTGCTACGATGAACC
CTTCTGGAAAGAAGCGACCATAGCCCTGATTGCTGTTTCGTGTGTTTTAT
TCATCGCTGTCATCCTTCTCCTCGTCTTGTACAATCGACGAAGAATGGAT
TCGTCTACCTACAAACGAGACATCGATACATAGGATGGTAAAAAGTGTAT
TATGTGCGAAATACCCAGATGCTAGAGAGTGCCAGCCGGTCAACGCAAGT
AAAGTCGAAAGTTTAGAGAATCATGTGGTGAAAAAACCATTAAACGTTTG
GTGGAAGACGCTCATAGATATGGAATTGAAAAGGTGCATTGCTACGATGA
ACCCTTCTGGAAAGAAGCGACCATAGCCCTGATTGCTGTTTCGTGTGTTT
TATTCATCGCTGTCATCCTTCTCCTCGTCTTGTACAATCGACGAAGAATG
GATTCGTCTACCTACAAACGAGACATCGATACATAGGATGGTAAAAAGTG
TATTATGTGCGAAATACCCAGATGCTAGAGAGTGCCAGCCGGTCAACGCA
AGTAAAGTCGAAAGTTTAGAGAATCATGTGGTGAAAAAACCATTAAACGT
TTGGTGGAAGACGCTCATAGATATGGAATTGAAAAGGTGCATTGCTACGA
TGAACCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000672XLOC_000672Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001267-proteinTCONS_00001267-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001267-exon-sc0000007-1575043694:1417646..1417740TCONS_00001267-exon-sc0000007-1575043694:1417646..1417740Clytia hemisphaericaexon
TCONS_00001267-exon-sc0000007-1575043694:1417287..1417364TCONS_00001267-exon-sc0000007-1575043694:1417287..1417364Clytia hemisphaericaexon
TCONS_00001267-exon-sc0000007-1575043694:1414730..1415678TCONS_00001267-exon-sc0000007-1575043694:1414730..1415678Clytia hemisphaericaexon
TCONS_00001267-exon-sc0000007-1510915933:1417646..1417740TCONS_00001267-exon-sc0000007-1510915933:1417646..1417740Clytia hemisphaericaexon
TCONS_00001267-exon-sc0000007-1510915933:1417287..1417364TCONS_00001267-exon-sc0000007-1510915933:1417287..1417364Clytia hemisphaericaexon
TCONS_00001267-exon-sc0000007-1510915933:1414730..1415678TCONS_00001267-exon-sc0000007-1510915933:1414730..1415678Clytia hemisphaericaexon
TCONS_00001267-exon-sc0000007-1491911889:1417646..1417740TCONS_00001267-exon-sc0000007-1491911889:1417646..1417740Clytia hemisphaericaexon
TCONS_00001267-exon-sc0000007-1491911889:1417287..1417364TCONS_00001267-exon-sc0000007-1491911889:1417287..1417364Clytia hemisphaericaexon
TCONS_00001267-exon-sc0000007-1491911889:1414730..1415678TCONS_00001267-exon-sc0000007-1491911889:1414730..1415678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1414730..1417740 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	7.23931e-05	0	0	0	0	0	0	3.89578e-09	2.14951e-08	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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