|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001264 ID=TCONS_00001264|Name=TCONS_00001264|organism=Clytia hemisphaerica|type=transcript|length=4315bp
CAAAGACGGAAGTGTAAGATGCCTTCTAACAGAAACAGTAGTATACAAAT
CGAAGAAAGATCGAGTCGATGATGGAGGTAGAGCTGGTAGAGGAGATAGG
TTTttatatcttaatttttttgcaaatattcTTCCTTTACTTTTACCCAA
TGATGATATGGCTACACCCATGGTGTAGAAAACGACGTGGCAAATGGTAC
CATTGGAGATTGTACTATTTTCTCTatgcatttggttggttgatattcgc
TTTACCATCGCACAACTTCAGCAAGACATATTATATGGTAGTTGGCTCGG
TCATTCATATAACCATTGTACCGTTCATTTTGGGTTGTCGTCGGTACAGA
AAGCGAAAAGAAGATTTGAATgcgaaaatgaaagaactagctGCTTTGAA
ACCACAAGTCATTACAATTTGTAAAGTCACTGAGCCTCGTTCTTCGTGCT
GCGCAAAACAACAAATCATTTGGAGAGAACAGAAAGAATTCGAGTACCGA
CATTGGATAGATCTAACTGACCAATATTCAGTCGAATTGGAACCACNGCT
GCGCAAAACAACAAATCATTTTGAGAGAACAGAAAGAATTCGAGTACCGA
CATTGGATAGATCTAACTGACCAATATTCAGTCGAACTGGAACCACAGAT
GAAAAACATGGTCGAAGgtgaattgaaaattgaaatagaaTTCGATGACG
GTGAAACGAGGGAATCTTATATTCAACATGTCCAAAATCTTCGAAATGAA
TTGCCACAATATTGCCAAAATGCTCACATTTCTACTAAACGTGTTTTCAA
AGTCGATGAAAGGGATATCGAATCTATCGAAAGATCGTTTTATGGAAGCC
ACATGCAACCATTATTCCTTTTAAAACTCGTTCATCCACAGATAGAATTT
TCTTTCAGAGTGGTGAATTGGTTTCTTCAAAAGTTTGGGTCGAAGAAATT
ATTGACTAAAGAAATTATCATCAAGAAGGTTATTTCTGACAGAACTATTG
AAGCTCTTTGAACATGATGATGTATTTACCGAAAGAAGGAAATCAAAAGT
TGATGATGGAATCCCATTCCATCAACTATTTTGAAGGATAAAGGAAACTG
CAACCTTAGCAACGCTCTATTGATCCTTTTTGTTACTCGTTTTTagatca
tttttttttattatctatTTTGAGCACTAGAAAAAATGATTTAAGCCCTC
TTGCATCCATATTAATGACTTATTTTCATAGACTTTCATAGACAAGCCAA
ATTGGTTTTTTTATCTAACTCGTCTGCGTTAGCTATCAAGAAATAAGAAA
TGCATCGATCCATCTTTTGTCTTTAaagaacatattttttttaatgaatg
aGCATGCGTGAAATGTATTTTGACATGCGGTTGCCATGGAAAGAATATAT
CGGGGATGTCACAAACAAGCATGGAAGCTGTCAGAAAACACGCcaggaga
aaaatgaagatagggaagatgaaaacgaaaaaaaagagaaaacatttttg
gtttgaaaatggaagaAAGAAGGTCTGAAAAATATGCACTGATATGTgcG
ATACTTCTAACTATAGTTGGTGGTTCATGGTCCTTGGCCAACAACACAAT
AAACTCACAACAAAACACTACAGTTACTGAGACAGTATGTTGGAACATCA
CTTGCAACAGCAGTGAGAAGTGTTCAACAACGATTACTCTCAACACTACA
ACATCCACCCTTCTTCAACTGGACAACCAAACATGCTTTCGAGCAGATTG
TATGGATTTGAAGTGCGCTCAACAATACCTCAAACAAACAGTGTCGCTAC
CGATGAAGGAAAGTTGTGTCGAAATGTCATGTCTCAACACGTCTTGTATC
GAAGATACCATCTCAAACACCAGTTGTTTTCCAAAACAAACATCGACCTC
TGCACCAACGACTACAACNGACATCAGTTGTTTTCCAAAACCAACCTCAA
CCTCTGCACCAACGACTacaaccacaacaacaaaaTCCATGCAACAACTA
CGCCAAGAAGAGTGCGACCAATACAAATACTGGCTATTCAAAAACAAATG
TTCGTCGCGCTTCAGTTTGTGTGCAAAGGACGTCTTTCTCAATATGAGTC
AACATATTGAATGCTTAGAAGAGAAGGGAACTCAACATTACAAATACCCT
GCTGCGCCAATGTTGTTAATCTACCATTTGATCAAATATACCAAAGTCTT
TATGAAGGATGAAGTGCTGAAAATGATCAAGAAAACGCCTTTCCCGATTG
AGGTCTTCAAAAAGTTAGTTTGGTATGGCGAAGAATCGTTCCGCATGTCT
GATATTGTATTACCCGGTTATCATAAGAACCCGTTCAAACGATCGCGGCG
ACGTTGGAACGGGATTAACGATACGCTAACCGTGCCTTACGGGAACATCC
TACGTGGCGATTTCATCTATAACTTTGCCATGTTTGATCAAGTGGTCGTg
gcaaaacaagaaaaagagaaatatcGATTGAAAGACAACTGGCCTGACCA
GCATCCAATCTCAAATGGAGAATACATCAGTTTCAGAAGCGAAACCGGAT
GGAAGCACTATACTAATCACGTGATCAACTCAATAGTGGTCACTTTCGAT
ATCGAGCCAGCGATGGCTGAGCTTCCCACGTACAACACCATCGCGTTTAC
ACACAAGGATCGGAAAATGGTCAATCCAATCTGCGTATATTGGCAACCGT
TGAATGCTGGCAAAGAAGGAGCGGACCCAGAAGCAGGATATTGGACCAAT
TACCATATGAAGATattgaaaaccaacaaatcgATGACCGTTTGCAAAGC
GTATACTTTTGGTTCGTTCGCTGTACTGATGGAACCATACGTACCAAAAA
ATAACAGCCAACCTCTGGATGTCACCGAGATTCTCTTCCTAGCGTTTATC
TCGTTCTCCGCCCTCCTTCAACTGGTGTATTTGGCGGGGATGTTCTCCTT
GAAGTGCCATAAGAATAGCGCTAACAGATTGTATATTTACGCAAACCTCA
GTCTGTTCATGATGCAAGTATTGATCGTTTTCTCCTTCCGCCATCGTGAC
GATTGGGAAAAGTGTGCTATATATACAGGTTGGATACAGTTCTTTTTCAT
CAACATATTGAGTTGGCTAATGATGGAGAGTGTACATCGCTTGTCGAATC
TCCTTCATTTCTTCCACAAAGACACCAACAGAGATTTCTTATATCACATC
GTCGGCCTGGGTATCCCCCTTTCCAATATGATTGCAATGCAAGGTTTCCC
GTATGACGAGTACAGCTCACTCCGCATCTGTTGGGTGTACGCCAACGACT
TACGGCTTTGGTATTTCATCAACCCTATCACAGCCATCATTTGTGCCAGC
TTCTTAATCAAGTTCATCACCTTCAAGAAATATCAAGGCCAGGATAAGTT
TCTAGAGAATGATTTCAACTACCAGCAAGCGCAGTTGAGTGTGTTTGCCA
CCGGAGCCATCTTACCCACCCTCCTGATCGGCTGGACCTTGATGAGCGTG
TCAGTGCGCACTGAAGCAAAATTGCAGAATTTTCTTCTCATCGCAGCATC
TATCGCTCAAGTATGTCTTGGATTGCAAGTGCTTTACTTTTATTTCTACC
GCAACCATTGGGTGGTGGAAGCGATGACCGAGGAGAAACGTATCAAGGAG
AAAAAGAAGTTGACCACCTTATCTTTCTTGAAAGGACTTCCCATTCGTAT
ACGTTACAAGGACAATCCTTATGACGCAATGGAGGAGAAAAGTGAGGACT
CGTACGAAATGAGATACACTTCATCTTCATCTCTTGGCGATGAAATCATG
TTAGACGAAAGTGTTTATTGACTCCTTCATCTCATTCATTTAACCTTTTA
ATGTAATTTTGTTAGACAGAGACGAGTAATAGCAGTCTAAAGCAGACCTT
CTGTATGAAACACTGTTGAGAAACACTGATGAACTTGCACTGAGTAAAGA
ACTGCATCTTATATACCGTTTTTAACACTTTGCGTAAGATACATATTAGA
AAGTGCATGTTTATGGGTGCGGAGAAAGCAAATTACTACGAAAATTGAAA
TCGAACGAGAAAAAACGTTGCGAGTTGAatgaattatttcaaaatataat
ataaatcaTATAAATCTTTTAGTGGGTTTTTCTTCCATGTTATAATTTGT
TTATTATTCAGTAGTGAGTAGCTAACTTTTGATGTACATAGATGTCATGA
ATAAATCATTCCACTAATATATTCAAATGGTATGAATCAAAAGGCTAAGG
TTAGttcattctatttttatctGGGTTGAATCCGAACATTGAAAGGTTAC
CAGGTGACAATGAAA Run BLAST on NCBI protein sequence of TCONS_00001264-protein >TCONS_00001264-protein ID=TCONS_00001264-protein|Name=TCONS_00001264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=770bp
MEERRSEKYALICAILLTIVGGSWSLANNTINSQQNTTVTETVCWNITCN
SSEKCSTTITLNTTTSTLLQLDNQTCFRADCMDLKCAQQYLKQTVSLPMK
ESCVEMSCLNTSCIEDTISNTSCFPKQTSTSAPTTTXDISCFPKPTSTSA
PTTTTTTTKSMQQLRQEECDQYKYWLFKNKCSSRFSLCAKDVFLNMSQHI
ECLEEKGTQHYKYPAAPMLLIYHLIKYTKVFMKDEVLKMIKKTPFPIEVF
KKLVWYGEESFRMSDIVLPGYHKNPFKRSRRRWNGINDTLTVPYGNILRG
DFIYNFAMFDQVVVAKQEKEKYRLKDNWPDQHPISNGEYISFRSETGWKH
YTNHVINSIVVTFDIEPAMAELPTYNTIAFTHKDRKMVNPICVYWQPLNA
GKEGADPEAGYWTNYHMKILKTNKSMTVCKAYTFGSFAVLMEPYVPKNNS
QPLDVTEILFLAFISFSALLQLVYLAGMFSLKCHKNSANRLYIYANLSLF
MMQVLIVFSFRHRDDWEKCAIYTGWIQFFFINILSWLMMESVHRLSNLLH
FFHKDTNRDFLYHIVGLGIPLSNMIAMQGFPYDEYSSLRICWVYANDLRL
WYFINPITAIICASFLIKFITFKKYQGQDKFLENDFNYQQAQLSVFATGA
ILPTLLIGWTLMSVSVRTEAKLQNFLLIAASIAQVCLGLQVLYFYFYRNH
WVVEAMTEEKRIKEKKKLTTLSFLKGLPIRIRYKDNPYDAMEEKSEDSYE
MRYTSSSSLGDEIMLDESVY Run BLAST on NCBI transcript from alignment at sc0000007:1402001..1407047- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001264 ID=TCONS_00001264|Name=TCONS_00001264|organism=Clytia hemisphaerica|type=transcript|length=5047bp|location=Sequence derived from alignment at sc0000007:1402001..1407047- (Clytia hemisphaerica)
CAAAGACGGAAGTGTAAGATGCCTTCTAACAGAAACAGTAGTATACAAAT
CGAAGAAAGATCGAGTCGATGATGGAGGTAGAGCTGGTAGAGGAGATAGG
TTTTTATATCTTAATTTTTTTGCAAATATTCTTCCTTTACTTTTACCCAA
TGATGATATGGCTACACCCATGGTGTAGAAAACGACGTGGCAAATGGTAC
CATTGGAGATTGTACTATTTTCGTAAGTAGTATCAATTTCATGAAATACT
TTTTGCCAAGAATATTTATTGTGATTTTAATTTAAAGTTAACAAATCAAC
TGTCAAGCCGGTCTTTAAGAAAATATCAACAGGATCTTTAACGTAAAGGG
CAACAATGCAGACAGGTGCAACATCGGTAAGTAAACGTTGGAAAGTCGAT
CTCTCAAAATGACATCGGTTACTTAGGTTGCTCGTTCATTGACAGTCTTG
AAAAAGTCATCAATGTTTATCGGTAGGAATAATAATACACTATACACTAC
ATTATAGTACCGTAATACAAACCAAATCTTCTTTTAATATTTCAGTCTAT
GCATTTGGTTGGTTGATATTCGCTTTACCATCGCACAACTTCAGCAAGAC
ATATTATATGGTAGTTGGCTCGGTCATTCATATAACCATTGTACCGTTCA
TTTTGGGTTGTCGTCGGTACAGAAAGCGAAAAGAAGATTTGAATGCGAAA
ATGAAAGAACTAGCTGCTTTGAAACCACAAGTCATTACAATTTGTAAAGT
CACTGAGCCTCGTTCTTCGTGCTGCGCAAAACAACAAATCATTTGGAGAG
AACAGAAAGAATTCGAGTACCGACATTGGATAGATCTAACTGACCAATAT
TCAGTCGAATTGGAACCACNGCTGCGCAAAACAACAAATCATTTTGAGAG
AACAGAAAGAATTCGAGTACCGACATTGGATAGATCTAACTGACCAATAT
TCAGTCGAACTGGAACCACAGATGAAAAACATGGTCGAAGGTGAATTGAA
AATTGAAATAGAATTCGATGACGGTGAAACGAGGGAATCTTATATTCAAC
ATGTCCAAAATCTTCGAAATGAATTGCCACAATATTGCCAAAATGCTCAC
ATTTCTACTAAACGTGTTTTCAAAGTCGATGAAAGGGATATCGAATCTAT
CGAAAGATCGTTTTATGGAAGCCACATGCAACCATTATTCCTTTTAAAAC
TCGTTCATCCACAGATAGAATTTTCTTTCAGAGTGGTGAATTGGTTTCTT
CAAAAGTTTGGGTCGAAGAAATTATTGACTAAAGAAATTATCATCAAGAA
GGTTATTTCTGACAGAACTATTGAAGCTCTTTGAACATGATGTATTTACC
GAAAGAAGGTAACCAAAAGTTGATGATGGAATCCNTGAAGCTCTTTGAAC
ATGATGATGTATTTACCGAAAGAAGGAAATCAAAAGTTGATGATGGAATC
CCATTCCATCAACTATTTTGAAGGATAAAGGAAACTGCAACCTTAGCAAC
GCTCTATTGATCCTTTTTGTTACTCGTTTTTAGATCATTTTTTTTTATTA
TCTATTTTGAGCACTAGAAAAAATGATTTAAGCCCTCTTGCATCCATATT
AATGACTTATTTTCATAGACTTTCATAGACAAGCCAAATTGGTTTTTTTA
TCTAACTCGTCTGCGTTAGCTATCAAGAAATAAGAAATGCATCGATCCAT
CTTTTGTCTTTAAAGAACATATTTTTTTTAATGAATGAGCATGCGTGAAA
TGTATTTTGACATGCGGTTGCCATGGAAAGAATATATCGGGGATGTCACA
AACAAGCATGGAAGCTGTCAGAAAACACGCCAGGAGAAAAATGAAGATAG
GGAAGATGAAAACGAAAAAAAAGAGAAAACATTTTTGGTTTGAAAATGGA
AGAAAGAAGGTCTGAAAAATATGCACTGATATGTGTAAGTCTGTTTTTTG
TTATTGACGGTTACTAATATTTGCGGTGCGGTAATTTTAGACTTGAATTG
GATTCAATTTCAGTTGTTGTTTAAATTATCTAAGCTCAGCGGGAGCTCAC
TTGCGTAATTTAGAGCCCAATTCTGTAAAACTTCGAAATTTTAGTCTCAG
TTAATTGTTTGTATCTTCTAAAACAAAATCTCCGATTCAGATACGTTTCA
GATCAACTACTTTTTAAGTACAAAATTTGGATCTACTTAGTNGATACGTT
TCAGATCAACTACCTTTTAGGTACAAAATTTGGATCTACTTAGTTGCAAA
ATTCTAAGCATATTCATTTTTAATTTTAGGCGATACTTCTAACTATAGTT
GGTGGTTCATGGTCCTTGGCCAACAACACAATAAACTCACAACAAAACAC
TACAGTTACTGAGACAGTATGTTGGAACATCACTTGCAACAGCAGTGAGA
AGTGTTCAACAACGATTACTCTCAACACTACAACATCCACCCTTCTTCAA
CTGGACAACCAAACATGCTTTCGAGCAGATTGTATGGATTTGAAGTGCGC
TCAACAATACCTCAAACAAACAGTGTCGCTACCGATGAAGGAAAGTTGTG
TCGAAATGTCATGTCTCAACACGTCTTGTATCGAAGATACCATCTCAAAC
ACCAGTTGTTTTCCAAAACAAACATCGACCTCTGCACCAACGACTACAAC
NGACATCAGTTGTTTTCCAAAACCAACCTCAACCTCTGCACCAACGACTA
CAACCACAACAACAAAATCCATGCAACAACTACGCCAAGAAGAGTGCGAC
CAATACAAATACTGGCTATTCAAAAACAAATGTTCGTCGCGCTTCAGTTT
GTGTGCAAAGGACGTCTTTCTCAATATGAGTCAACATATTGAATGCTTAG
AAGAGAAGGGAACTCAACATTACAAATACCCTGCTGCGCCAATGTTGTTA
ATCTACCATTTGATCAAATATACCAAAGTCTTTATGAAGGATGAAGTGCT
GAAAATGATCAAGAAAACGCCTTTCCCGATTGAGGTCTTCAAAAAGTTAG
TTTGGTATGGCGAAGAATCGTTCCGCATGTCTGATATTGTATTACCCGGT
TATCATAAGAACCCGTTCAAACGATCGCGGCGACGTTGGAACGGGATTAA
CGATACGCTAACCGTGCCTTACGGGAACATCCTACGTGGCGATTTCATCT
ATAACTTTGCCATGTTTGATCAAGTGGTCGTGGCAAAACAAGAAAAAGAG
AAATATCGATTGAAAGACAACTGGCCTGACCAGCATCCAATCTCAAATGG
AGAATACATCAGTTTCAGAAGCGAAACCGGATGGAAGCACTATACTAATC
ACGTGATCAACTCAATAGTGGTCACTTTCGATATCGAGCCAGCGATGGCT
GAGCTTCCCACGTACAACACCATCGCGTTTACACACAAGGATCGGAAAAT
GGTCAATCCAATCTGCGTATATTGGCAACCGTTGAATGCTGGCAAAGAAG
GAGCGGACCCAGAAGCAGGATATTGGACCAATTACCATATGAAGATATTG
AAAACCAACAAATCGATGACCGTTTGCAAAGCGTATACTTTTGGTTCGTT
CGCTGTACTGATGGAACCATACGTACCAAAAAATAACAGCCAACCTCTGG
ATGTCACCGAGATTCTCTTCCTAGCGTTTATCTCGTTCTCCGCCCTCCTT
CAACTGGTGTATTTGGCGGGGATGTTCTCCTTGAAGTGCCATAAGAATAG
CGCTAACAGATTGTATATTTACGCAAACCTCAGTCTGTTCATGATGCAAG
TATTGATCGTTTTCTCCTTCCGCCATCGTGACGATTGGGAAAAGTGTGCT
ATATATACAGGTTGGATACAGTTCTTTTTCATCAACATATTGAGTTGGCT
AATGATGGAGAGTGTACATCGCTTGTCGAATCTCCTTCATTTCTTCCACA
AAGACACCAACAGAGATTTCTTATATCACATCGTCGGCCTGGGTATCCCC
CTTTCCAATATGATTGCAATGCAAGGTTTCCCGTATGACGAGTACAGCTC
ACTCCGCATCTGTTGGGTGTACGCCAACGACTTACGGCTTTGGTATTTCA
TCAACCCTATCACAGCCATCATTTGTGCCAGCTTCTTAATCAAGTTCATC
ACCTTCAAGAAATATCAAGGCCAGGATAAGTTTCTAGAGAATGATTTCAA
CTACCAGCAAGCGCAGTTGAGTGTGTTTGCCACCGGAGCCATCTTACCCA
CCCTCCTGATCGGCTGGACCTTGATGAGCGTGTCAGTGCGCACTGAAGCA
AAATTGCAGAATTTTCTTCTCATCGCAGCATCTATCGCTCAAGTATGTCT
TGGATTGCAAGTGCTTTACTTTTATTTCTACCGCAACCATTGGGTGGTGG
AAGCGATGACCGAGGAGAAACGTATCAAGGAGAAAAAGAAGTTGACCACC
TTATCTTTCTTGAAAGGACTTCCCATTCGTATACGTTACAAGGACAATCC
TTATGACGCAATGGAGGAGAAAAGTGAGGACTCGTACGAAATGAGATACA
CTTCATCTTCATCTCTTGGCGATGAAATCATGTTAGACGAAAGTGTTTAT
TGACTCCTTCATCTCATTCATTTAACCTTTTAATGTAATTTTGTTAGACA
GAGACGAGTAATAGCAGTCTAAAGCAGACCTTCTGTATGAAACACTGTTG
AGAAACACTGATGAACTTGCACTGAGTAAAGAACTGCATCTTATATACCG
TTTTTAACACTTTGCGTAAGATACATATTAGAAAGTGCATGTTTATGGGT
GCGGAGAAAGCAAATTACTACGAAAATTGAAATCGAACGAGAAAAAACGT
TGCGAGTTGAATGAATTATTTCAAAATATAATATAAATCATATAAATCTT
TTAGTGGGTTTTTCTTCCATGTTATAATTTGTTTATTATTCAGTAGTGAG
TAGCTAACTTTTGATGTACATAGATGTCATGAATAAATCATTCCACTAAT
ATATTCAAATGGTATGAATCAAAAGGCTAAGGTTAGTTCATTCTATTTTT
ATCTGGGTTGAATCCGAACATTGAAAGGTTACCAGGTGACAATGAAA Coding sequence (CDS) from alignment at sc0000007:1402001..1407047- >TCONS_00001264 ID=TCONS_00001264|Name=TCONS_00001264|organism=Clytia hemisphaerica|type=CDS|length=4626bp|location=Sequence derived from alignment at sc0000007:1402001..1407047- (Clytia hemisphaerica)
GCGATACTTCTAACTATAGTTGGTGGTTCATGGTCCTTGGCCAACAACAC
AATAAACTCACAACAAAACACTACAGTTACTGAGACAGTATGTTGGAACA
TCACTTGCAACAGCAGTGAGAAGTGTTCAACAACGATTACTCTCAACACT
ACAACATCCACCCTTCTTCAACTGGACAACCAAACATGCTTTCGAGCAGA
TTGTATGGATTTGAAGTGCGCTCAACAATACCTCAAACAAACAGTGTCGC
TACCGATGAAGGAAAGTTGTGTCGAAATGTCATGTCTCAACACGTCTTGT
ATCGAAGATACCATCTCAAACACCAGTTGTTTTCCAAAACAAACATCGAC
CTCTGCACCAACGACTACAACNGACATCAGTTGTTTTCCAAAACCAACCT
CAACCTCTGCACCAACGACTACAACCACAACAACAAAATCCATGCAACAA
CTACGCCAAGAAGAGTGCGACCAATACAAATACTGGCTATTCAAAAACAA
ATGTTCGTCGCGCTTCAGTTTGTGTGCAAAGGACGTCTTTCTCAATATGA
GTCAACATATTGAATGCTTAGAAGAGAAGGGAACTCAACATTACAAATAC
CCTGCTGCGCCAATGTTGTTAATCTACCATTTGATCAAATATACCAAAGT
CTTTATGAAGGATGAAGTGCTGAAAATGATCAAGAAAACGCCTTTCCCGA
TTGAGGTCTTCAAAAAGTTAGTTTGGTATGGCGAAGAATCGTTCCGCATG
TCTGATATTGTATTACCCGGTTATCATAAGAACCCGTTCAAACGATCGCG
GCGACGTTGGAACGGGATTAACGATACGCTAACCGTGCCTTACGGGAACA
TCCTACGTGGCGATTTCATCTATAACTTTGCCATGTTTGATCAAGTGGTC
GTGGCAAAACAAGAAAAAGAGAAATATCGATTGAAAGACAACTGGCCTGA
CCAGCATCCAATCTCAAATGGAGAATACATCAGTTTCAGAAGCGAAACCG
GATGGAAGCACTATACTAATCACGTGATCAACTCAATAGTGGTCACTTTC
GATATCGAGCCAGCGATGGCTGAGCTTCCCACGTACAACACCATCGCGTT
TACACACAAGGATCGGAAAATGGTCAATCCAATCTGCGTATATTGGCAAC
CGTTGAATGCTGGCAAAGAAGGAGCGGACCCAGAAGCAGGATATTGGACC
AATTACCATATGAAGATATTGAAAACCAACAAATCGATGACCGTTTGCAA
AGCGTATACTTTTGGTTCGTTCGCTGTACTGATGGAACCATACGTACCAA
AAAATAACAGCCAACCTCTGGATGTCACCGAGATTCTCTTCCTAGCGTTT
ATCTCGTTCTCCGCCCTCCTTCAACTGGTGTATTTGGCGGGGATGTTCTC
CTTGAAGTGCCATAAGAATAGCGCTAACAGATTGTATATTTACGCAAACC
TCAGTCTGTTCATGATGCAAGTATTGATCGTTTTCTCCTTCCGCCATCGT
GACGATTGGGAAAAGTGTGCTATATATACAGGTTGGATACAGTTCTTTTT
CATCAACATATTGAGTTGGCTAATGATGGAGAGTGTACATCGCTTGTCGA
ATCTCCTTCATTTCTTCCACAAAGACACCAACAGAGATTTCTTATATCAC
ATCGTCGGCCTGGGTATCCCCCTTTCCAATATGATTGCAATGCAAGGTTT
CCCGTATGACGAGTACAGCTCACTCCGCATCTGTTGGGTGTACGCCAACG
ACTTACGGCTTTGGTATTTCATCAACCCTATCACAGCCATCATTTGTGCC
AGCTTCTTAATCAAGTTCATCACCTTCAAGAAATATCAAGGCCAGGATAA
GTTTCTAGAGAATGATTTCAACTACCAGCAAGCGCAGTTGAGTGTGTTTG
CCACCGGAGCCATCTTACCCACCCTCCTGATCGGCTGGACCTTGATGAGC
GTGTCAGTGCGCACTGAAGCAAAATTGCAGAATTTTCTTCTCATCGCAGC
ATCTATCGCTCAAGTATGTCTTGGATTGCAAGTGCTTTACTTTTATTTCT
ACCGCAACCATTGGGTGGTGGAAGCGATGACCGAGGAGAAACGTATCAAG
GAGAAAAAGAAGTTGACCACCTTATCTTTCTTGAAAGGACTTCCCATTCG
TATACGTTACAAGGACAATCCTTATGACGCAATGGAGGAGAAAAGTGAGG
ACTCGTACGAAATGAGATACACTTCATCTTCATCTCTTGGCGATGAAATC
ATGTTAGACGAAAGTGTTTATTGAATGGAAGAAAGAAGGTCTGAAAAATA
TGCACTGATATGTGCGATACTTCTAACTATAGTTGGTGGTTCATGGTCCT
TGGCCAACAACACAATAAACTCACAACAAAACACTACAGTTACTGAGACA
GTATGTTGGAACATCACTTGCAACAGCAGTGAGAAGTGTTCAACAACGAT
TACTCTCAACACTACAACATCCACCCTTCTTCAACTGGACAACCAAACAT
GCTTTCGAGCAGATTGTATGGATTTGAAGTGCGCTCAACAATACCTCAAA
CAAACAGTGTCGCTACCGATGAAGGAAAGTTGTGTCGAAATGTCATGTCT
CAACACGTCTTGTATCGAAGATACCATCTCAAACACCAGTTGTTTTCCAA
AACAAACATCGACCTCTGCACCAACGACTACAACNGACATCAGTTGTTTT
CCAAAACCAACCTCAACCTCTGCACCAACGACTACAACCACAACAACAAA
ATCCATGCAACAACTACGCCAAGAAGAGTGCGACCAATACAAATACTGGC
TATTCAAAAACAAATGTTCGTCGCGCTTCAGTTTGTGTGCAAAGGACGTC
TTTCTCAATATGAGTCAACATATTGAATGCTTAGAAGAGAAGGGAACTCA
ACATTACAAATACCCTGCTGCGCCAATGTTGTTAATCTACCATTTGATCA
AATATACCAAAGTCTTTATGAAGGATGAAGTGCTGAAAATGATCAAGAAA
ACGCCTTTCCCGATTGAGGTCTTCAAAAAGTTAGTTTGGTATGGCGAAGA
ATCGTTCCGCATGTCTGATATTGTATTACCCGGTTATCATAAGAACCCGT
TCAAACGATCGCGGCGACGTTGGAACGGGATTAACGATACGCTAACCGTG
CCTTACGGGAACATCCTACGTGGCGATTTCATCTATAACTTTGCCATGTT
TGATCAAGTGGTCGTGGCAAAACAAGAAAAAGAGAAATATCGATTGAAAG
ACAACTGGCCTGACCAGCATCCAATCTCAAATGGAGAATACATCAGTTTC
AGAAGCGAAACCGGATGGAAGCACTATACTAATCACGTGATCAACTCAAT
AGTGGTCACTTTCGATATCGAGCCAGCGATGGCTGAGCTTCCCACGTACA
ACACCATCGCGTTTACACACAAGGATCGGAAAATGGTCAATCCAATCTGC
GTATATTGGCAACCGTTGAATGCTGGCAAAGAAGGAGCGGACCCAGAAGC
AGGATATTGGACCAATTACCATATGAAGATATTGAAAACCAACAAATCGA
TGACCGTTTGCAAAGCGTATACTTTTGGTTCGTTCGCTGTACTGATGGAA
CCATACGTACCAAAAAATAACAGCCAACCTCTGGATGTCACCGAGATTCT
CTTCCTAGCGTTTATCTCGTTCTCCGCCCTCCTTCAACTGGTGTATTTGG
CGGGGATGTTCTCCTTGAAGTGCCATAAGAATAGCGCTAACAGATTGTAT
ATTTACGCAAACCTCAGTCTGTTCATGATGCAAGTATTGATCGTTTTCTC
CTTCCGCCATCGTGACGATTGGGAAAAGTGTGCTATATATACAGGTTGGA
TACAGTTCTTTTTCATCAACATATTGAGTTGGCTAATGATGGAGAGTGTA
CATCGCTTGTCGAATCTCCTTCATTTCTTCCACAAAGACACCAACAGAGA
TTTCTTATATCACATCGTCGGCCTGGGTATCCCCCTTTCCAATATGATTG
CAATGCAAGGTTTCCCGTATGACGAGTACAGCTCACTCCGCATCTGTTGG
GTGTACGCCAACGACTTACGGCTTTGGTATTTCATCAACCCTATCACAGC
CATCATTTGTGCCAGCTTCTTAATCAAGTTCATCACCTTCAAGAAATATC
AAGGCCAGGATAAGTTTCTAGAGAATGATTTCAACTACCAGCAAGCGCAG
TTGAGTGTGTTTGCCACCGGAGCCATCTTACCCACCCTCCTGATCGGCTG
GACCTTGATGAGCGTGTCAGTGCGCACTGAAGCAAAATTGCAGAATTTTC
TTCTCATCGCAGCATCTATCGCTCAAGTATGTCTTGGATTGCAAGTGCTT
TACTTTTATTTCTACCGCAACCATTGGGTGGTGGAAGCGATGACCGAGGA
GAAACGTATCAAGGAGAAAAAGAAGTTGACCACCTTATCTTTCTTGAAAG
GACTTCCCATTCGTATACGTTACAAGGACAATCCTTATGACGCAATGGAG
GAGAAAAGTGAGGACTCGTACGAAATGAGATACACTTCATCTTCATCTCT
TGGCGATGAAATCATGTTAGACGAAAGTGTTTATTGAATGGAAGAAAGAA
GGTCTGAAAAATATGCACTGATATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001264-exon-sc0000007-1575043694:1406826..1407047 | TCONS_00001264-exon-sc0000007-1575043694:1406826..1407047 | Clytia hemisphaerica | exon |
| TCONS_00001264-exon-sc0000007-1575043694:1405712..1406502 | TCONS_00001264-exon-sc0000007-1575043694:1405712..1406502 | Clytia hemisphaerica | exon |
| TCONS_00001264-exon-sc0000007-1575043694:1405114..1405647 | TCONS_00001264-exon-sc0000007-1575043694:1405114..1405647 | Clytia hemisphaerica | exon |
| TCONS_00001264-exon-sc0000007-1575043694:1402001..1404768 | TCONS_00001264-exon-sc0000007-1575043694:1402001..1404768 | Clytia hemisphaerica | exon |
| TCONS_00001264-exon-sc0000007-1510915933:1406826..1407047 | TCONS_00001264-exon-sc0000007-1510915933:1406826..1407047 | Clytia hemisphaerica | exon |
| TCONS_00001264-exon-sc0000007-1510915933:1405712..1406502 | TCONS_00001264-exon-sc0000007-1510915933:1405712..1406502 | Clytia hemisphaerica | exon |
| TCONS_00001264-exon-sc0000007-1510915933:1405114..1405647 | TCONS_00001264-exon-sc0000007-1510915933:1405114..1405647 | Clytia hemisphaerica | exon |
| TCONS_00001264-exon-sc0000007-1510915933:1402001..1404768 | TCONS_00001264-exon-sc0000007-1510915933:1402001..1404768 | Clytia hemisphaerica | exon |
| TCONS_00001264-exon-sc0000007-1491911889:1406826..1407047 | TCONS_00001264-exon-sc0000007-1491911889:1406826..1407047 | Clytia hemisphaerica | exon |
| TCONS_00001264-exon-sc0000007-1491911889:1405712..1406502 | TCONS_00001264-exon-sc0000007-1491911889:1405712..1406502 | Clytia hemisphaerica | exon |
| TCONS_00001264-exon-sc0000007-1491911889:1405114..1405647 | TCONS_00001264-exon-sc0000007-1491911889:1405114..1405647 | Clytia hemisphaerica | exon |
| TCONS_00001264-exon-sc0000007-1491911889:1402001..1404768 | TCONS_00001264-exon-sc0000007-1491911889:1402001..1404768 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:1402001..1407047 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
| GO:0004888 | transmembrane signaling receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
| GO:0007166 | cell surface receptor signaling pathway |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
| molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
Blast
BLAST of TCONS_00001264 vs. Swiss-Prot (Human)
Match: AGRL3 (Adhesion G protein-coupled receptor L3 OS=Homo sapiens GN=ADGRL3 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 1.891e-18 Identity = 106/460 (23.04%), Postives = 179/460 (38.91%), Query Frame = 3
Query: 2562 TNH--VINSIVVTFDIEPAMAEL-----PTYNTIAFTHKDRKMVNPICVYWQPLNAGKEGADPEAGYWTNYHMKILKTNKSMTVCKAYTFGSFAVLMEPYVPKNNSQPLDVTEXXXXXXXXXXXXXQLVYLAGMFSLKC-----------HKNSANRLYIYANL--SLFMMQVLIVFSFRHRDDWEKCAIYTGWIQFFFINILSWLMMESVHRLSNLLHFFHKDTNRDFLYHIVGLGIPLSNMIAMQGFPYDEYSSLRICWVYANDLRLWYFINPITAIICASFLIKFITFKKYQGQDKFLENDFNYQQAQLSVFATGAILPTLLIGWT----LMSVSVRTEAKLQNFLLIAASIAQVCLGLQVLYFYFY----------------RNHWVVEAMTEEK--RIKEKKKLTTLSFLKGLPIRIRYKDNPYDAMEEKSEDSY-EMRYTSSSSLGDEIMLDES 3812
TNH ++NS V+T I + P T+ + + NP C +W GYW+ ++L TNK+ T C +FAVLM K++ D+ L + ++ + SL C ++R I+ NL SLF+ ++L + D CA++ + FFF+ +W+ +E V L+ F + +R +++VG G+P + Y Y + ++CW+ + +W FI P T II + + I K L+ + + + GAI L+G T LM ++ T +I A + + LQ ++ + + R H TE K T + G RIR N D + ++SE S+ SS+SL E +L+ +
Sbjct: 758 TNHSVIVNSPVITAAINKEFSNKVYLADPVVFTVKHIKQSEENFNPNCSFW------SYSKRTMTGYWSTQGCRLLTTNKTHTTCSCNHLTNFAVLMAHVEVKHSDAVHDL------------LLDVITWVGILLSLVCLLICIFTFCFFRGLQSDRNTIHKNLCISLFVAELLFLIGINRTDQPIACAVFAALLHFFFLAAFTWMFLEGVQLYIMLVEVFESEHSRRKYFYLVGYGMPALIVAVSAAVDYRSYGTDKVCWLRLDTYFIWSFIGPATLIIMLNVIFLGIALYKMFHHTAILKPESGCLD-NIKSWVIGAIALLCLLGLTWAFGLMYINEST--------VIMAYLFTIFNSLQGMFIFIFHCVLQKKVRKEYGKCLRTHCCSGKSTESSIGSGKTSGSRTPGRYSTGSQSRIRRMWN--DTVRKQSESSFITGDINSSASLNREGLLNNA 1188
The following BLAST results are available for this feature:
|
