TCONS_00001260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001260
Unique NameTCONS_00001260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1021

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001260 ID=TCONS_00001260|Name=TCONS_00001260|organism=Clytia hemisphaerica|type=transcript|length=1021bp
TCGAAAGTTCTCTTAAATGCGACACGTGCTAACAATAAGGACGCGTATGC
TGATGGCAGTTTCTTCCGAACTGTTGAAATGCCCGAACTGCAAGTGGATA
AACTTGTCGTGNTGTTTCAGTTTCTTCCGAACCGTTGAAATGCCAGAACT
GCAAGTGGATAAACTTGTTGTATATTTAGCTTCCAGTATTGGTAAAGAGG
TCAGGGAAACGTGCAATGACTCAATATCAatggaaaatatacggaaagaC
GCAGAATCACGAAATATTGCTATTGAATGTTTTGACCAACCAAGCTTGGT
ATTGAACGTATTTTGTTTGAAGTATCCAGCGGCAAAGGAGTGTGTGAGAA
GAAATACGCTGTTGAGCAAGGATATTCATCACGCCAAACAAATATCAACT
CCTGAAGATGAAGTCAAGCTTTGGAAGACTGTTTGCATCGTTTTGATCGG
AGTATGTGGGATACTTTTGATGTATATTGTGATGACCCTTGTTCATCGAT
CCGTGTGTGTTGGTAAAACTTCGAACTTCAAGTATCCTCATACTTGGTCC
ATGTCCAAGAAACCGATGCTCTCCAATGATGAGATTGACAACAATAATGA
CTTGGAACGCGTAGTGTGAAATTTGTTCGCAATCAAAAGGAAGTATTATA
AGATGGCGCTGAAATGATTACGCACGCCATTGAAACAGGGTTGTTGCGAG
TTCGAAAGGTCAAAGAAATCGGCTTCAAAGTTAGCAATTGAAGAATGAGA
TTCACCAAGCCATGGTATCGAATCGATTctcaaaatcaactcaaaagtGG
TTTCGCTAATATGCATTAGGCTTCTGCCGGACAGGGCTATGATTAATTGA
AAAACATACGAAATAAATAATAAGGATGATAAAAAAGACAATTTGTAGAT
AGCGATTTCGAAGTTTGTATGTAAGTTCGCAAGAATGTTGTTATTTGATg
attttacttttctttctgtaaataaTTTAAAGAATTGTATGTAAGAGATA
TATGTATTTCGGAAGTAGTTT
Run BLAST on NCBI

transcript from alignment at sc0000007:1305863..1308378-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001260 ID=TCONS_00001260|Name=TCONS_00001260|organism=Clytia hemisphaerica|type=transcript|length=2516bp|location=Sequence derived from alignment at sc0000007:1305863..1308378- (Clytia hemisphaerica)
TCGAAAGTTCTCTTAAATGCGACACGTGCTAACAATAAGGACGCGTATGC
TGATGGCAGGTTTGTTACACATTTCTGTCAGTTGTGGTTCTCTGTTTTCC
AATATTCGTGATTGTCGTAGCATTAGAAAGTCGCTAAGAAAACCTCTTTA
TCATAGTGAAAAGATGAAGTACCTACCAAGCAATATCCGCTTTTTTGAAT
TAAGCAGTGCTCTCAAGAGCAGATTTTTCTAAATTTATAATTTCAATGTT
GTGTAGTTTCTGCATAAGAAAAGTGAACGCTACAAATTGTTGTTGATTTT
ATTCGATTAGGGCTCAAAAGTTACGCCCAGTAAGCCCGCTACGCCCACGT
GAAGCACGTAGTCGAAACGTGATCGTATTCGTTAATTTTATTACAATATA
CAAATTAGTCCTGATTTATTTCATGCTAAAGGATAAATATTTAGTATCTT
TCAAAAATAATAATTTGATTAGTTGCTTTCACTTTTGATTCTTGTTTCAG
TTTCTTCCGAACTGTTGAAATGCCCGAACTGCAAGTGGATAAACTTGTCG
TGNTGTTTCAGTTTCTTCCGAACCGTTGAAATGCCAGAACTGCAAGTGGA
TAAACTTGTTGTATATTTAGCTTCCAGTATTGGTAAAGAGGTCAGGTACG
TAAATTACCATGCTACAATATGAAAATATATAGCGATTAGAATTATGTTT
ATAATGTTGATGTCCCTTCATCCTTTATTCTTTGCATTCTCTTGCCTGCT
ATTGCATTTTACTNTTGATGTCCCTTCATCCTTTATTCTTTGCATTCTTC
TGCCTGCTATTGCATTTTACTCTCAGGTATCTGATAAATTTGAGTTTGAA
AGGATTGGCGAGTTGTATAAAATATAATAATTGACAGAATTGACAAGCGA
GGGTAGGGTCGTATCAAGGCACCTTAGATCTCGGAATTTGATAAGGAAAT
TGTAATTTTCCAATTCTCTCTAACTACAGGGAAACGTGCAATGACTCAAT
ATCAATGGAAAATATACGGAAAGACGCAGAATCACGAAATATTGCTATTG
AATGTTTTGACCAACCAAGGTGACCAATAATAAGAAATCCTTTTGTTTAT
GTTTTATCTTTAAAGCTTCAATGATCTAACTGACTGGAGCCTATAATTTA
TTTTAAATTTAATGAGTTTTTATCTTGTCGAGCATAGATATCGATTGCTC
TCGACAAAAACAAAGAGCTATCTTCGATATTTCAATCGATATTACTTTTA
CCATTTTCCAATTTTCCTTAATTGCAAGCTTGGTATTGAACGTATATTGT
TTGAAGTACNATTTTCAATCTATATTTTCCACTTTTTCTTATTTCGCAAG
CTTGGTATTGAACGTATTTTGTTTGAAGTATCCAGCGGCAAAGGAGTGTG
TGAGAAGAAATACGCTGTTGAGCAAGGATATTCATCACGCCAAACAAATA
TCAACTCCTGAAGATGAAGTCAAGTAAGTTGTGTGAATTCAAAACGATCT
TAAGAATTTCTTTATATTATTTACGCGCATTACACTGTCCGGCATTGAGA
CTTGCAGATGGTGNGCTTTTTATTTAACTATAGTTCGTATGCTTTTTATT
TAACTATAGTTCGTATGCTTTTTATTTAACTATAGTTCGTATGCTTTTTA
TTTAACTATAGTTCGTATGCTTTTTATTTAACTATAGTTCGTATGCTTTT
TATTTAACTATAGTTCGTATGCTTTTTATTTAACTATAGTTCGTATGCTT
TTTATTTAACTATAGTTCGTATGCTTTTTATTTAACTATAGTTCGTATGC
TTTTTATTTAACTATAGTTCGTATGCTTTTTATTTAACTATAGTTCGTAT
GCTTTTTATTTAACTATAGTTCGTATGCTTTTTATTTAACTATAGTTCGT
ATGCTTTTGCAGGCTTTGGAAGACTGTTTGCATCGTTTTGATCGGAGTAT
GTGGGATACTTTTGATGTATATTGTGATGACCCTTGTTCATCGATCCGTG
TGTGTTGGTAAAACTTCGAACTTCAAGTATCCTCATACTTGGTCCATGTC
CAAGAAACCGATGCTCTCCAATGATGAGATTGACAACAATAATGACTTGG
AACGCGTAGTGTGAAATTTGTTCGCAATCAAAAGGAAGTATTATAAGATG
GCGCTGAAATGATTACGCACGCCATTGAAACAGGGTTGTTGCGAGTTCGA
AAGGTCAAAGAAATCGGCTTCAAAGTTAGCAATTGAAGAATGAGATTCAC
CAAGCCATGGTATCGAATCGATTCTCAAAATCAACTCAAAAGTGGTTTCG
CTAATATGCATTAGGCTTCTGCCGGACAGGGCTATGATTAATTGAAAAAC
ATACGAAATAAATAATAAGGATGATAAAAAAGACAATTTGTAGATAGCGA
TTTCGAAGTTTGTATGTAAGTTCGCAAGAATGTTGTTATTTGATGATTTT
ACTTTTCTTTCTGTAAATAATTTAAAGAATTGTATGTAAGAGATATATGT
ATTTCGGAAGTAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000669XLOC_000669Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001260-exon-sc0000007-1575043694:1308320..1308378TCONS_00001260-exon-sc0000007-1575043694:1308320..1308378Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1575043694:1307734..1307878TCONS_00001260-exon-sc0000007-1575043694:1307734..1307878Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1575043694:1307310..1307399TCONS_00001260-exon-sc0000007-1575043694:1307310..1307399Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1575043694:1306906..1307028TCONS_00001260-exon-sc0000007-1575043694:1306906..1307028Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1575043694:1305863..1306466TCONS_00001260-exon-sc0000007-1575043694:1305863..1306466Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1510915933:1308320..1308378TCONS_00001260-exon-sc0000007-1510915933:1308320..1308378Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1510915933:1307734..1307878TCONS_00001260-exon-sc0000007-1510915933:1307734..1307878Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1510915933:1307310..1307399TCONS_00001260-exon-sc0000007-1510915933:1307310..1307399Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1510915933:1306906..1307028TCONS_00001260-exon-sc0000007-1510915933:1306906..1307028Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1510915933:1305863..1306466TCONS_00001260-exon-sc0000007-1510915933:1305863..1306466Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1491911889:1308320..1308378TCONS_00001260-exon-sc0000007-1491911889:1308320..1308378Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1491911889:1307734..1307878TCONS_00001260-exon-sc0000007-1491911889:1307734..1307878Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1491911889:1307310..1307399TCONS_00001260-exon-sc0000007-1491911889:1307310..1307399Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1491911889:1306906..1307028TCONS_00001260-exon-sc0000007-1491911889:1306906..1307028Clytia hemisphaericaexon
TCONS_00001260-exon-sc0000007-1491911889:1305863..1306466TCONS_00001260-exon-sc0000007-1491911889:1305863..1306466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1305863..1308378 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.60252	3.01925	1.33407	1.35968	0.462888	0	0	1.18294	4.09112	3.22813	1.37348	2.63657	0.973319	0.923375	2.73798	2.89149	0.819857	0.377856	0.610753	0	0	0.426416	3.80758	4.86359	5.1453	4.80177	0.99225	1.05273	1.21143	1.17553
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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