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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001247 ID=TCONS_00001247|Name=TCONS_00001247|organism=Clytia hemisphaerica|type=transcript|length=1217bp
TTTCAgtcaaataaaaatcaaaacttatgTTTCATCGCATCTTGAGATCT
CTTTATAAAGAACAACAACGAAGAGCAAATCGTTTGTACTCCTTATGGTT
CACTAGCAATGGGAATGGTGTACAAAAAGCCATCACCAATGCTGAAAAAC
TGGTCGGTTATCCAACCTCTTACAGTAGCTTGAAATACTTAGCTGAAGAG
GAGCCTGCGAACTTTCTTGGTTTGGCGAAGAAGCTCGTTGGGAGTGGTCA
TCCTCTTCTATCAACAGCCCGTGACCTGCTCTCGCAAGACCCTCATATCG
GGCACCATCTTGGTGGATTATGGGTACTGCTTCTCTCCAAAGCTGCTGGT
AGTGGTGATGATCTAGATGTTCTGCAAAGTGAATTAGTAAATGGTATACA
CCAAAAACAACGAGCTATTGCCGATACTACTGAATTGATCAATACAGCTT
TTCTGGTGCATCGAAGCATGGTCGATATTGTTCAATCACAATCCAATCAA
ACTTTGAACCTTGGGAACAAACTATCAGTACTCGGCGGTGACTTCTTGTT
AGCCAAAGCATCTCTCGAACTCGGTAAACTTGAAAACACGAAGGTGGTGG
AGATGGTGTCACAAGCGATTGGTCACCTCTCCGAGGGAGCAACCATCGAA
CGAACGCACTCCTCTTTTGATGATTTGAAAAGTTGGGAGGATTTCATTTT
CTTGTTGAGAGGGAGTTTGCTGGCGCACAGTTGCCGCTCTGCTGTTCAGG
TGGTCGGACATCCTGAAAAAGTATGTGAAGATGCTTACAACTTTGGAATG
AATTTGGCTCTGGCTCAAAGGTGTGTGGAAGATATAGAGGTTTaccaaaa
taataagaaaattcTTACGAACTCAAATTTCGTATTAATGCTGGCTCGAA
ATACGTCAAAGGAAATCAATGAGAATTGTAAGGCTATAGACCACCAAGAG
CCTGATATAAACTCAACCAAAACACTTAAGAACACGATAGAACAAGACAT
GCCAGACATTGTAAACAAGACTCGATTACACTACGAAGAACATTATTTAT
CTCGGTGTCGATCAAGTATCGAGTATTTTCCAAATGCGAATTCTGTACAA
GCTATAAATGATATTCTCAGCACGTTGTCACAAGAATAACAGTGAAAAGC
ATCAGgtGATATCCGATTTTTCTACTACCCGGTAAAGGCAAACGAGGGCG
GGCGGTCAAAGGTAAGT Run BLAST on NCBI transcript from alignment at sc0000007:1288601..1295675- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001247 ID=TCONS_00001247|Name=TCONS_00001247|organism=Clytia hemisphaerica|type=transcript|length=7075bp|location=Sequence derived from alignment at sc0000007:1288601..1295675- (Clytia hemisphaerica)
TTTCAGTCAAATAAAAATCAAAACTTATGTTTCATCGCATCTTGAGATCT
CTTTATAAAGAACAACAACGAAGAGCAAATCGTTTGTACTCCTTATGGTT
CACTAGCAATGGGAATGGTGTACAAAAAGCCATCACCAATGCTGAAAAAC
TGGTCGGTTATCCAACCTCTTACAGTAGCTTGAAATACTTAGCTGAAGAG
GAGCCTGCGAACTTTCTTGGTTTGGCGAAGAAGCTCGTTGGGAGTGGTCA
TCCTCTTCTATCAACAGCCCGTGACCTGCTCTCGCAAGACCCTCATATCG
GGCACCATCTTGGTGGATTATGGGTACTGCTTCTCTCCAAAGCTGCTGGT
AGTGGTGATGATCTAGATGTTCTGCAAAGTGAATTAGTAAATGGTATACA
CCAAAAACAACGAGCTATTGCCGATACTACTGAATTGATCAATACAGGTA
TTTTCAAGTTTCTATTGTAGGAACTCATGTTAAAACACCTCTGTCTCAGT
GCCCCGGTGAGATGTTGTTAGCCAGTGAGGACAAATCAAACGAGCCAATT
TATATGAAATTATTTTGTTTAAGATATCAATTGTTTACTCTTAGGTGCCA
AATAAACGCCCCCCCCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCC
CCCCCCCCCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCCCCCCCCC
CCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCCCCCCCCCCCCCCGC
TTGTTAATTTTTCGATTTTTTTCCAACCCCCCCCCCCCCCCGCTTGTTAA
TTTTTCGATTTTTTTCTCATTCAGTGGGACCTTATTAGGACCCCCCCCCC
GTTTATTAATTCTTGAAAAAATTCCCAGCTACAAAAAGGAAAATTCCTTG
TTTTACTCTAAAAAGCCTAAATTTAGTCTATTTTGACACCTAAAAGTACA
GCAGCTAAAATCCAATAGAGATTCTCAAATTGCAAGTGCTTTCCTCAGTT
GGGATTAGAGTTTTCTATAGGTTTTAAATGGGGAAGAATTTCCGGGATAT
TTTCTCTCATCGTGGACGATCCTTTGGCCAATTTTACTTTCGACTATTTT
ACTCGTAGCTTTTCTGGTGCATCGAAGCATGGTCGATATCGTTGNTCACT
ATTTTACTCGTAGCTTTTCTGGTGCATCGAAGCATGGTCGATATTGTTCA
ATCACAATCCAATCAAACTTTGAACCTTGGGAACAAACTATCAGTACTCG
GCGGTGACTTCTTGTTAGCCAAAGCATCTCTCGAACTCGGTAAACTTGAA
AACACGAAGGTGGTGGAGATGGTGTCACAAGCGATTGGTCACCTCTCCGA
GGGAGCAACCATCGAACGAACGCACTCCTCTTTTGATGATTTGAAAAGTT
GGGAGGATTTCATTTTCTTGTTGAGAGGGAGTTTGCTGGCGCACAGTTGC
CGCTCTGCTGTTCAGGTGGTCGGACATCCTGAAAAAGTAAGTGAAAGATG
AATCTTTTGTTTTACATTATCATTTACCACTGTCTGGCTATCAAGAAATA
TTAAATGCTACAATAAAAGAAGTTATAGTTTTATTCTACTCTGATCGATT
TCTTGTGTGAATGTTTGGTCCATTTTCTGGGTAACTGTTTTTTTTAATTG
TTTTTACTGGAGCTTTTTTAAATTTTCATTAGCCCCCTTCTTACTAGAAA
TGTGTTTTTTGCACTTCTATTCTTTCATTGTGCAGGTATGTGAAGATGCT
TACAACTTTGGAATGAATTTGGCTCTGGCTCAAAGGTGTGTGGAAGATAT
AGAGGTTTACCAAAATAATAAGAAAATTCTTACGAACTCAAATTTCGTAT
TAATGCTGGCTCGAAATACGTCAAAGGAAATCAATGAGAATTGTAAGGCT
ATAGACCACCAAGAGCCTGATATAAACTCAACCAAAACACTTAAGAACAC
GATAGAACAAGACATGCCAGACATTGTAAACAAGACTCGATTACACTACG
AAGAACATTATTTATCTCGGTGTCGATCAAGTATCGAGTATTTTCCAAAT
GCGAATTCTGTACAAGCTATAAATGATATTCTCAGCACGTTGTCACAAGA
ATAACAGTGAAAAGCATCAGGTATTATTCGTATGTCAAACCTTTCCTCTC
TTCCTGTCATCGGCTTATTAGTTTTCTGTCAAGTCCTTTATTTAAACAAT
GACGTCAATCTATCAACACCCAAAGGAGGTGGAGACCCCAAATCATTCAA
AAGAGGTATTTACGTAACTCTAAATAGATCGTCTCTTCACAAAATAGAAT
GCCTAAAATGACGGTATGCATTATACCATCAGCCAAACTTTGGTTAAATA
GTTTTATTCACTGTTGATACTGATTCTATTCACCTTCGAAACGGTTTTTT
CCGCAACATGAAACTTGGTCGGTTCTTTTTTTACACCCTCAAAAGTCTCT
TGAAGGGTTAAAAATTATAGATTAACAATCGAGTCTCTAAAAGGGTCCCA
AAATTACGAAATATAAATTATGACTCCCTCAAAGGGTCAAAATTCTCGCA
ATTTGGATTAAATTTTGGCTGAAAATTAGGAAGATAATCTCTCAAAAGGT
CGTAAAAACGTCTAAAAAGGGGCGAATTTCTGTCACCTCGCAAATTAGTA
CCCTCATCCACTTAACGTCCAAAGTGTCCAAACTTTAGTTTTCAGACAAA
CACTAAAAAACTGTATATTGGAAAGAGGATGCCATACTAATTAGTTATGA
TGACGTCATTTACATCTTCCTTAGAACTAGGAAATTTGGAAACAGTTGTG
GATCCCCGTTTCAACTTCCATACAAGTTATAAATCCTATATTGAGTTCCA
TTGAAGAAAGTTTGAATGGGAAATAGTTTGCATCGCTGAATGACTACTTC
ATAAATTCTTGTATAATTCGTTAAGTAAAATGTTTAAAGCATTTTTCGCA
TCACTTTTTCGCATACTTTTCCTACAATCGAGTAGTTGTATACTGTTGAG
ATTAAGTTCAAGCCATATGGATACAGTTAATTTTATTGGCATTGTTGATA
ACAGCAAATTCAACATGATAATCTTCTTGCGAAATATGTCAGGGTGTTTG
CGCTTTTAATCCTATCCAACACAGAATGTATAATTAATTTGTGAAGATTG
TTGCAATTTTCTGGGCTAAAAAAGATGGGTTGAGTTTAGTTGATTGATAT
CGATTTAGATCATTACATAAAAGTTGATGCTGTGGACGTAAACCATCATT
TGTTTGACTGTGACAAGACAAGAAATGAAAAATTCCTGTCGTGCTTTTGT
CTAAATATACAGACTTTATGTAAAAGAAAATGTCGAAGTTGGTTACTTTT
CGAATTTTGGCAAATGTTCGAGATTGTTCTTTGCTTCATTTGTCATTAAA
ATGGTATAAAAGGATGTTTTGAGTCGAAAGTCAAGACACACTCATCATAA
AGATTGGAATAGTGAAGATACACAATTATAACATGTTCAAAATGGTGGCA
TCCTACATCAAGATTCTCACTCTGGCCTCACTATGTCTCTTATGTCAAGG
TAAACTTGCTTTTGATTTCAGATTTTGTTTCAAACTTTCCAGAATGATTT
AAAAGCTTTTTCTCTGATGTCTATCCTCCCTAATTCATTCCCTAATTCGT
TTAGAATCAAAAGTATCAAAACGTTGAAAAGATATTTCTGAGGAAAAAGA
TAAGATATTTTATAAAAAAGTGAATAATCAAGAGAGAAATGAAGGTTTTT
CTGGTTATCCAAAATGCATTTTTCTAATATATAATATGTCTGATTTTAAA
TCTATGAACAGACCTAGATTTAGATAATAAGATACAGCCCTTTGACGCAG
CCACCATTTTTTTTCATATCCAGGCAAGGGATGTCATTACACAGAAGTCA
GTATTGTTCTGGATGTCTCTGGAACCGTTTATCCAACACATTACAAACAA
TCATTGAATTTCGTCAACCGAATTCTTTCCATCATCAATATTTCACCAGA
AAGCTCACTTGCTGGTGTGACCACGTTCGCCACCAAAGCTGACGTCAGAT
TCTTTTGTGATCAACACTCTTCAAGCGAGACTTTGGAGAAATCAATCATA
GGATTACCATACACCTACACTGGTCCTGGTGATATATTCACTAACCTTCG
AGATGGACTGGTTAAGGGTCAGCAAGTTTTGACAGGGCGTGGTTGTGGTC
GGTTGAACGCCAAACAAATTATGGTTTTAATCAGCGATGGGCGTGCTAAT
CGTGGAGAAGGAGGTACTTATTCTTTCTCAAAAACTCGCTAGACATCAGG
GTAGGCAAGACAGACAATTACAAACTCTTGTTTTTAGCAATAAGGACTGA
TTTCTCTCAACGAACAACGACGACTCCGCTTTGTAACTTGATTTAGCCAA
AATCTATGGAATTCATATATTTTATACATTCAAATATTTTTCTTGAGGTC
ATATTATTTTTTTCTGTTATAAGGTTTTGATGGCATCCGAGAAGAAGCGA
AATCGATTCGTGATCAAGGGGTAACCATTGTTGCATTGGGTGTTGGAGAA
CGTATCAAGATCGACTTGTTGAAGAACATCACTGCAAGTGAAGAGCGTGT
CACGACAAGTATTCACTTCGATGAAACCTTCATCAACAATGCTTTGCAAA
TCTTGAAGAAAGAAAAATGCGGATCTGATAGTAAGTGCAAAATTTCTTCC
TCACATATAGCTAATAAGATATGGAAAACCACGTTTTACTACCCTAAAAT
TTTCTTTATCTGGACAAAGGATGGTCTGGCATCAATTCTTGTCTGTTTGT
ACAAACCGACGAGAGAAAAGAAGTTATAACAGTATCACCTAGGAAATTCC
TCTCAACCCTTCCTCAAGCTCTAAACAAGAATCTCTATCTTTATCGTTCA
GTCAAAACAAAACAATGTCAATGTGAAGTACCAGAGGTGGTGAAAACGAT
TTCATCTTCTACGTCTTTCGATCAATCGACCATTGCTTCTTCCAACAAAG
GTAACTACTATTTCTCTCATTTCGTATCACTTAAAATTGAGAATTCTGCT
CGTCCAGGTAGGAATCAAAATACATATTACCGAGCTGAAAATATCAAAAA
TGGTGAATATAAAATATGCTAAATTTAGGTTATTTGCAAAAATAATAGGG
ACTTCCCCTTGGGGCATAAGATTTAAAACTTTTCTCTCGACATATTAAGA
TATTTGGGAAAATTAGAAAACAGAGTCAACGATCGTTGGAATTGGAAAAA
AAGAAACAAATCAACCAACTGGTGGCATCTACTAACGAATTTGTGCTCCT
TTACTACCTGGGGTTTTGTAGAGGTCTGCAATTCAGACTAATGGGGCTCC
TTTTTGACCAGAGAGCATTTCAATCCCATACTTGATCTGAAAGTTAAGAT
TTCACTTACGTTGTATTGTTTTTATTTTTAGGCTCATGCTATTTGGAGAA
GGTAGCGAACGCTTCCAAAGAAACCCAAGTGTTGTACGAAAAACATCAAG
CACAAAAAATCAAAAATGAAGAGTGCATGAAAAGTCTGAAAGAAATGATT
CTCAAAGGGCAGGGAAGTAAAGAAGAATTAGAAACATTGTTGGCAAGTTT
TGAGACGTGTGCTCATATGGATTGTCGAATGAAGACTGTCGAAGAGATAA
TCAACCAACGAAAAACCTTCCTGAAGAGCGAAACAGCCTCTTGTGATGAT
TTTATCAAGAAAACAACCTAGATTCTTATTAAGATTAAATGGGAATGGCG
CCTTGTAACCATTTTCGTTTTGAGATGAAACGTAAAACGAGGCTTGCCTT
TATTCTTTGTGAATTGGACTGAACTGCTATAGTTGCTAGTGTTTTTAATT
TTTTTTCTGAAATTGTCACTTTGCATTTTACCGTCTTTATTGTATCCATT
CGCGCTTCCATTGGGATGAAGTATGAGGTTATCTAGACCCAGGTCCGCTT
GAGAAAAGGTACAACAGACCCAGAAACAGCCTGGTATTCCTCTATAACTT
ACAAAACTTTGTCAGTATTCGGGACTCACTTTCTACAAGTGATGCTGAGT
CTTTGTGGCATCTCTAAAAGTTACATTTTCACAATTGTGTATTATAACTG
TTTATTATAATAATATAATGTATATACATTTTTACTTATCATAAATTATT
CCTAAATTTTGAGAGCTTAATACATGTGGAAATCTGCTTTACTACTTTCG
AATTTTTATGCTTTAAAATACCTTAGGCGTACAAACTTTCGCGAGTAGAA
ACTTTCGCGATTTTCACGAATTTTGGCCCTTTTCGCGAAAGTCTTTAAAA
ACTCTATGAAGGGCTATTCGCGAAAGTTTATGCTCGCGATAAATTTTTGA
CAAAATAGGAAATCTGTAAAACTTCAAACTTTGAATGAAATTTAATTTTT
ATGGCACTTTTTAGCCTGCTAAATGACTAATAAGTCAAAGGCCAAATGTT
TCAAGCCAATCCAACAAGCCATTTTTTCATGTGAAAATTTTCAATTTAAC
GTCTTCATGATATTTTCAAAAATATTTTCCCGTCAAATTCGCGAAAGTAA
ATGTCGTGAATTTCGCGATTTTTCGTCCTTGCGAAAGTTTCTGCTCGCGA
AAGTTTGTACGCTTAAAGTACTAGTAATACAATAGTAGATAATTCTTTAA
GATTTTTTTGCATATGATCATGGCTAAGGGCTTTAGTTAAGAAAAGAAAC
AAAAAGATTTGTATTTTGTTCTGAATTTTAGTCTTTTTTCCACCAAAGTA
GAGGGTAAGTTGGTGCGCCAGCCGCCAGTTTTCGAATGAAGTCATTGCAT
TGTTGTTTACATTTTGAAAAGCGCGCGAAATTTTAAAGATTCGCTCTGCG
CGAGTTTTGAAACAGACGTGTCTTCTTATTATCTGATATTCCGATGGTGT
ATTGGCAGCCGCCCACGCCCAGGCTCAGCATTGTTCTTAGGTTGTCTTTT
TGTTCTTTTTTTGGCATTTTTTTTAGCCTTGTTGCTATTTGCGGCTCTTG
TTATTATTTTTAGGTGATATCCGATTTTTCTACTACCCGGTAAAGGCAAA
CGAGGGCGGGCGGTCAAAGGTAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001247-exon-sc0000007-1575043694:1295229..1295675 | TCONS_00001247-exon-sc0000007-1575043694:1295229..1295675 | Clytia hemisphaerica | exon |
| TCONS_00001247-exon-sc0000007-1575043694:1294190..1294512 | TCONS_00001247-exon-sc0000007-1575043694:1294190..1294512 | Clytia hemisphaerica | exon |
| TCONS_00001247-exon-sc0000007-1575043694:1293556..1293940 | TCONS_00001247-exon-sc0000007-1575043694:1293556..1293940 | Clytia hemisphaerica | exon |
| TCONS_00001247-exon-sc0000007-1575043694:1288601..1288662 | TCONS_00001247-exon-sc0000007-1575043694:1288601..1288662 | Clytia hemisphaerica | exon |
| TCONS_00001247-exon-sc0000007-1510915933:1295229..1295675 | TCONS_00001247-exon-sc0000007-1510915933:1295229..1295675 | Clytia hemisphaerica | exon |
| TCONS_00001247-exon-sc0000007-1510915933:1294190..1294512 | TCONS_00001247-exon-sc0000007-1510915933:1294190..1294512 | Clytia hemisphaerica | exon |
| TCONS_00001247-exon-sc0000007-1510915933:1293556..1293940 | TCONS_00001247-exon-sc0000007-1510915933:1293556..1293940 | Clytia hemisphaerica | exon |
| TCONS_00001247-exon-sc0000007-1510915933:1288601..1288662 | TCONS_00001247-exon-sc0000007-1510915933:1288601..1288662 | Clytia hemisphaerica | exon |
| TCONS_00001247-exon-sc0000007-1491911889:1295229..1295675 | TCONS_00001247-exon-sc0000007-1491911889:1295229..1295675 | Clytia hemisphaerica | exon |
| TCONS_00001247-exon-sc0000007-1491911889:1294190..1294512 | TCONS_00001247-exon-sc0000007-1491911889:1294190..1294512 | Clytia hemisphaerica | exon |
| TCONS_00001247-exon-sc0000007-1491911889:1293556..1293940 | TCONS_00001247-exon-sc0000007-1491911889:1293556..1293940 | Clytia hemisphaerica | exon |
| TCONS_00001247-exon-sc0000007-1491911889:1288601..1288662 | TCONS_00001247-exon-sc0000007-1491911889:1288601..1288662 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:1288601..1295675 - |
Blast
BLAST of TCONS_00001247 vs. Swiss-Prot (Human)
Match: DLP1 (Decaprenyl-diphosphate synthase subunit 2 OS=Homo sapiens GN=PDSS2 PE=1 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 1.756e-42 Identity = 100/255 (39.22%), Postives = 160/255 (62.75%), Query Frame = 3
Query: 126 KAITNAEKLVGYPTSYSSLKYLAEEEPANFLGLAKKLVGSGHPLLSTARDLLSQDPXXXXXXXXXXXXXXSKAAG-SGDDLDVLQSELVNGIHQKQRAIADTTELINTAFLVHRSMVDIVQSQSN----QTLNLGNKLSVLGGDFLLAKASLELGKLENTKVVEMVSQAIGHLSEGATIERTHSS----FDD--LKSWEDFIFLLRGSLLAHSCRSAVQVVGHPEKVCEDAYNFGMNLALAQRCVEDIEVYQNNK 857
+ ++ AEK+VGYPTS+ SL+ L +E +N +KLVG+ HPLL+TAR L+ D L GL VLL+SKAAG S + ++V+GI+ QR++A+ TELI+ A LVHR +V++ + QS+ + + GNK+++L GDFLLA A L L+NTKVVE+++ A+ L +G E + S DD + +W++ FL G+LLA SC++A+++ H +V A+ +G ++A++ + D++ + K
Sbjct: 51 QVVSEAEKIVGYPTSFMSLRCLLSDELSNIAMQVRKLVGTQHPLLTTARGLV-HDSWNSLQLRGLVVLLISKAAGPSSVNTSCQNYDMVSGIYSCQRSLAEITELIHIALLVHRGIVNLNELQSSDGPLKDMQFGNKIAILSGDFLLANACNGLALLQNTKVVELLASALMDLVQGVYHENSTSKESYITDDIGISTWKEQTFLSHGALLAKSCQAAMELAKHDAEVQNMAFQYGKHMAMSHKINSDVQPFIKEK 304
The following BLAST results are available for this feature:
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