TCONS_00001224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001224
Unique NameTCONS_00001224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001224 ID=TCONS_00001224|Name=TCONS_00001224|organism=Clytia hemisphaerica|type=transcript|length=2362bp
CCAAGCAGCTGATTCTTTTAtcatttgtatttattttatttagacataaa
aaataaaaaacaatatgCAGCTTAAACACTTAAAAACTACACTGGCTCCC
CAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAATAC
CAAAATGGCAATAGTATCAACTGATCGtgtagttgttctttttgatgAAC
ATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAACT
GGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCTGATTCCAC
CAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATACAAGATTG
GTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAACAG
AGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATATTATTTT
TGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaaaaccaacaaat
cacaAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGT
CCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAG
ATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGGGCAAGTTGTGA
AACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCATTGCA
GCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGGCGGGTATT
ACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGTTG
CAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAGA
TTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAA
ACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGAAAA
GAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTGGAGTTGAACTG
TTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATGAC
TTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGCATCAGGAGCCA
GAGTTGTTTTAAAATCACATTATGGATACGAGATTGATGAAGTGAAAATA
ATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAAACATTGCTTGT
GGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATGGCATAATTCAG
GTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTTGTATGGTATTC
AATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGC
TACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAGCGTACGTTTGA
ATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGGGTTATTTG
ATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCAGGGATGGTTGT
AGCCAATATTTCACATGATgtcaaaattgactggttagaGATGAATGAGA
CTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGTTATTATTGGCA
GATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGCTCTTATGT
GCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAGAAGCGATC
TTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTATCGTTCCC
ATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAACGT
GATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAGGGC
TAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGGCTGTT
TCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCTATGTGGAA
GACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCATCGCCGAAA
GGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGGA
ATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGTA
TCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAAC
TTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGAG
ATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAGC
CAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATATT
TGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAAT
TTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147653-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001224 ID=TCONS_00001224|Name=TCONS_00001224|organism=Clytia hemisphaerica|type=transcript|length=10805bp|location=Sequence derived from alignment at sc0000007:1136849..1147653- (Clytia hemisphaerica)
CCAAGCAGCTGATTCTTTTATCATTTGTATTTATTTTATTTAGACATAAA
AAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTACACTGGCTCCC
CAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTTTCTCTTCATAT
AAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAATATAACCATTG
CTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACTGTTTAATCCTT
TCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTTTTATGAAGGAT
GGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAATACCAAAAT
GGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGATGAACATGGAG
AAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAGTAAGCTCT
ATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAAAGTTATCACAT
GATATCGATTACAATATGGGATGTATTATATTAAGTTAAACTTTTTCCTC
ATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACTTTGAACAAGAA
AAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGGTTTAGCATTAA
CTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTGTCTTTTTCTAT
GTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATTTTGATGAAATT
AACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAAATGTTAAAAAC
ATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTATCAGCCAATCAG
ATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTATTTTAGTAGTC
ACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTTCATTTATTGAT
TTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTCTAAATGATTGT
TCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCT
CCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGT
ATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTGATCTTTCTAAA
AACTGAAACATCTACAGTCAGATATTATTTACTTATATTTGAAGATCGAA
CATAATATGAAAATGTTATTTATATATATTAATTAATTTTTGATTTTATT
TTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAACAGGTAAAG
TATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAATTTTTTTAACA
TTTGATACCATAGTATTGTATTATCCTATACTGTGTTAAATGAATGATTT
TACTTTACACATCTGCTATAATAATATAATTTAATGAGGATCAATTTTTA
CATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATAT
TATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTGACATTTTGACT
TTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTATAAATTGATAA
AGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCTATAGGGCTGAC
AAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTAATGTCACCCCA
TAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTTTTGAAAACAAA
TAATTAATTTTACTATACTCATGAATTTTAAAAATCAAAAGGTGATCCTA
AAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATGGTATTGGTAGG
AAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGACGATATAAAGC
ATACAAACACCTAAAATTTTAGATCACACTTCAAATGATTGAGTTTGAGA
ATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATTTCCATTTTTTT
TTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACAAACTGTCTATG
GAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGGCATTCTGTTTT
AATTACATAAATGATTTTCAAACTATAAAATGAAAGCAATATTACTATTA
TGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGAGTACAGCTTTC
AAGAAACTACTTTAACAATTCATATTTAAGCATTTTCACAACAGATAATA
AACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAACATTTTCTTGA
CTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTTTGCCATCTGTT
CTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGA
GCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGT
ATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAAACTAAACTAAT
ATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTAGAAGAGTCAAT
TGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGCAAATTTCTTTT
TTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATTATATGCTATCC
TAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATAGGGGCAAGTTG
TGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCNTACAAGAGAAA
ATTTTTTAACATTTGATACCACAGTATTGTATTATCCTATACTGTGTTAA
ATGAATGATTTTACTTTACACATCTGCTATAATAATATAATTTAATGAGA
ATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAA
AATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTATG
ACATTTTGACTTTTATTATATCATGATATAATGATGGATGATATCTCTTT
TAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTTGTCTGTTTGAC
CATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGCAAAAAAAGTGT
TTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATTTCTTAGCTGAA
CAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTACTATACTCGTG
AATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTCAAGATGGT
TACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTACTTTTTAACCT
GGAAATATATATTGACGATATAAAGCATACAAACACCTAAAATTTTAGAT
CACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCTTCATCTTTCTG
TAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATGGCAAGTCTAAA
AACCAACAAATCACAAACTGTCTATGGAACTGGTATCCATTGTATATCTT
TGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATGATTTTCAAACT
ATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTGAAGCTTGTAAA
TGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTTAACAATTCATA
TTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTTTTTGAAAAAGT
TTCATTTAATATAAACATTTTCTTGACTGGACAAATCCAATAACTGTTTC
AGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCCTGATGGGAAAG
GTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATATGTTTGAA
GATACTGGGACAGGTTTGACCCAGGTATTTTACATATTAAATGTTAAAAC
ATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTTCTTTTTGAGAA
GTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACAAACAATCATTC
CAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCATTACACAAAGA
ATAATACAAAGAATTATATGCTATCCTAATATTCAAATCTCAAGATTGGT
TCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTGTCCACCGTATG
CCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTGATAAAAGAATT
GTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTATGTTTCACGAGA
AAATCATTTTTATTTAACAAATGATTAATCCTAATATTTCATTTCCCTAA
ACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTCAAAAGATGATG
AGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTG
GTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGGAGTCCCCGAAG
AGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAATTTATACACCA
TCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCTGTAAGT
TAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATAGGTTTTAATAC
ATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCAATTAGTATTCT
ACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACAAATATATCATA
ATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGACTTCAGGGCAC
ACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAGAAGATCTATTT
TCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCCAGGTAAAATGA
AGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCAACCCTTTCAGA
CCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTCCTGACCACTTG
ATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTACAAAAATATCT
TTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTAAAACCTTTTAT
GCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAAAGGTTAAGAAA
AAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAAAAAATTGTCCA
GAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGAACATATAACAT
AGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCTGCCAACTGGCC
TTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGCCGCTGTGAGGA
GACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGCTCTCTAAAGAG
CAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTCTCGACTGACTA
GTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTAGCTGGTTGCAA
TTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATTCAAGCGCAGGC
CCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCACAATTATAAAAA
AATATTTAGTTATTTTCACTAACATTACAAATACAAAGAAACTTTGTTAT
TATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAAATTTGGCATCA
GGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGGTTTGTATATA
AATAATTTTTATAAGTAGAAAATCTATCATCAATATTTCTGCCTAATCAA
CTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTATATTTCTTGGC
CCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAGTGAAAATAATG
GGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCATT
GCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGTTTTGT
TTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTTAACAAATGATT
AATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCGGGTATTACAAA
ACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGTTGCAATA
GCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAGATTACG
TGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAAACCAA
AAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGAAAAGAGAT
GGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCTTATTTTTTGTC
CTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGACTTACATATGG
ATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAAGAATTTTTTTA
AATGGTATTTACAAATATATCATAATACAGTAGCTACATCTTACTGAATA
ATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGTTGAACTGTTTG
ATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATGACTTAT
GTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTATACTTTTGAAGA
TATTAACCCTTCAACCCTTTCAGACCCGGTACACACGATTTAAATCTGCC
AAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATACACCGGATGCT
GTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAAAACCATTGCCT
AACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATTTGGAAAAAATG
TTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAATCTGTATTTTGT
AAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTTTCTCTGTCTGT
GCGAGAGTGTGGAACATATAACATAGTTGAAAATAACACATCATCTTTCT
TATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAAATGAATTTAAT
GTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTTAGCAAAGGAAA
GCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTTCGGTTCTCTAG
CCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCTTGTTTTTTTTT
AGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAAGAAATGTTCTG
AACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAATGGCCTTTTTT
GAATGAAATGCACAATTATAAAAAAATATTTAGTTATTTTCACTAACATT
ACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTGTTGATTTCTAG
GTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTTAAAATCACA
TTATGGATACGAGGTTTGTATATAAATAATTTTTATAAGTAGAAAATCTA
TCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAATCTGTAATATCA
TATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTTGCTGATGTTTT
TAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTTCTTGTTGGACA
CACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAACAAGCTTAGTG
AGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAATATCATAAGATC
TTTCAAGTGACATTATGGAACATAAAAAATAACAGAACTTGATTTTGATA
ATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCATAATTCAGGTG
GAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTTTGTTTAAAATT
CAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAGTAGATTACTTC
AAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCCACTGCTAAAAT
CATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGTGTTACTTTGTT
ATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCAGGAGAATTATC
TTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAGAACAGAAT
TCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAATGCAGATATGAA
ACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAATTTGATTTTTG
AATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTCAGAATAATTTA
CCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGGAAAGAATTGAA
ACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACTAGACTGGACGC
TAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTAACTTTTTCAGC
GTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATT
GGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAAGTAAACGTTTT
GTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTCTCATTTCTATC
GGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTAAGCTCAGTTGT
AAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAATTTCTTTAATTT
TCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATTTCACATGATGT
CAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTTATTGTCTCTAA
GTTATGAATTTCCAAGATAATATATTTATATTTAGATGCAAATCTCAAGA
GTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTATAGATGAATGAG
ACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGGTAAGTAATTT
AGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTGTTTTAAAGTGT
GAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACTTACCTCTCAAC
TTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAAACCACTATTTC
TACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAG
CTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTGAATCACCTGAA
CGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTTGTTCATTTCCT
CTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAAAACTATTTTTT
ATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACTTGTAATTTGAG
GGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTATGGCCTAAATG
CTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGAAAAATGAGGGT
ATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTTTTATCAATTTA
TTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCCAAGAAAGG
TGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTTCGCCTGAGCTT
ACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAAGAAATCTGGGA
GCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATGAAAGCTTCAAT
CAAATATGAAGACTTGGCAAATCGATTTTATATTATTTTCTCATGATAAA
AAATTACATTAATTGACTTTGTGACCCTTGTTTTACACGGTTTAGCCTAC
GATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTTCAAATCAAAGT
TGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCCTTGCATGTTTA
GGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAACGTGATCG
TACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAGGGCTAATC
GAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGTTTGTCTTATT
GGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAATGCTGCAGCAAA
TTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATTTTTTATTGAGA
TTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTGTCGTCTTTTCT
TCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAAAATTGTATTTT
GTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAG
AAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTT
TTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAATCATGATTCAA
TGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTAAGAGGATTCTG
TAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTTTGTAGGTGTTT
TGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGGAATCAACG
ACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGTATCATCCG
ACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAACTTGCAGA
AAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGAGATGTACC
AAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAGCCAAAAGA
CATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATATTTGATGAA
GTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATTTAGTTA
ACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001224-exon-sc0000007-1575043694:1147551..1147653TCONS_00001224-exon-sc0000007-1575043694:1147551..1147653Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1147213..1147356TCONS_00001224-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1146533..1146645TCONS_00001224-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1146360..1146399TCONS_00001224-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1146129..1146197TCONS_00001224-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1144144..1144223TCONS_00001224-exon-sc0000007-1575043694:1144144..1144223Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1143780..1143867TCONS_00001224-exon-sc0000007-1575043694:1143780..1143867Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1143435..1143537TCONS_00001224-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1143110..1143342TCONS_00001224-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1141089..1141184TCONS_00001224-exon-sc0000007-1575043694:1141089..1141184Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1140241..1140303TCONS_00001224-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1140002..1140100TCONS_00001224-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1139822..1139875TCONS_00001224-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1139532..1139635TCONS_00001224-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1139169..1139254TCONS_00001224-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1138935..1138999TCONS_00001224-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1138765..1138812TCONS_00001224-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1138480..1138647TCONS_00001224-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1137666..1137802TCONS_00001224-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1137340..1137447TCONS_00001224-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1575043694:1136849..1137209TCONS_00001224-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1147551..1147653TCONS_00001224-exon-sc0000007-1510915933:1147551..1147653Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1147213..1147356TCONS_00001224-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1146533..1146645TCONS_00001224-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1146360..1146399TCONS_00001224-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1146129..1146197TCONS_00001224-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1144144..1144223TCONS_00001224-exon-sc0000007-1510915933:1144144..1144223Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1143780..1143867TCONS_00001224-exon-sc0000007-1510915933:1143780..1143867Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1143435..1143537TCONS_00001224-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1143110..1143342TCONS_00001224-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1141089..1141184TCONS_00001224-exon-sc0000007-1510915933:1141089..1141184Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1140241..1140303TCONS_00001224-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1140002..1140100TCONS_00001224-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1139822..1139875TCONS_00001224-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1139532..1139635TCONS_00001224-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1139169..1139254TCONS_00001224-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1138935..1138999TCONS_00001224-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1138765..1138812TCONS_00001224-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1138480..1138647TCONS_00001224-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1137666..1137802TCONS_00001224-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1137340..1137447TCONS_00001224-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1510915933:1136849..1137209TCONS_00001224-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1147551..1147653TCONS_00001224-exon-sc0000007-1491911889:1147551..1147653Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1147213..1147356TCONS_00001224-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1146533..1146645TCONS_00001224-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1146360..1146399TCONS_00001224-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1146129..1146197TCONS_00001224-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1144144..1144223TCONS_00001224-exon-sc0000007-1491911889:1144144..1144223Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1143780..1143867TCONS_00001224-exon-sc0000007-1491911889:1143780..1143867Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1143435..1143537TCONS_00001224-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1143110..1143342TCONS_00001224-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1141089..1141184TCONS_00001224-exon-sc0000007-1491911889:1141089..1141184Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1140241..1140303TCONS_00001224-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1140002..1140100TCONS_00001224-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1139822..1139875TCONS_00001224-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1139532..1139635TCONS_00001224-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1139169..1139254TCONS_00001224-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1138935..1138999TCONS_00001224-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1138765..1138812TCONS_00001224-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1138480..1138647TCONS_00001224-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1137666..1137802TCONS_00001224-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1137340..1137447TCONS_00001224-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001224-exon-sc0000007-1491911889:1136849..1137209TCONS_00001224-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147653 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.527038	0.0587264	0.707681	5.89152	10.4508	4.77052	13.9734	12.4368	5.99312	0.439337	5.64914	3.16376	0.304808	0.508104	0.321478	0.00360533	3.59151	0.517288	2.6867e-05	5.50508	0.13374	1.47955	0.165605	2.12982	8.06948	14.3883	0.00827292	0.0725102	2.95505	2.18801
Blast
[Close]
BLAST of TCONS_00001224 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.87 bits (2820), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 2 
Query:   65 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2341
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760
The following BLAST results are available for this feature:
BLAST of TCONS_00001224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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