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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001214 ID=TCONS_00001214|Name=TCONS_00001214|organism=Clytia hemisphaerica|type=transcript|length=2748bpRun BLAST on NCBI protein sequence of TCONS_00001214-protein >TCONS_00001214-protein ID=TCONS_00001214-protein|Name=TCONS_00001214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp MNTDIDQHILVRYEIKKRLGKGAYGIVWKGIDRKTGEIVALKKIFDAFRNRun BLAST on NCBI transcript from alignment at sc0000007:1086988..1097129- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001214 ID=TCONS_00001214|Name=TCONS_00001214|organism=Clytia hemisphaerica|type=transcript|length=10142bp|location=Sequence derived from alignment at sc0000007:1086988..1097129- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:1086988..1097129- >TCONS_00001214 ID=TCONS_00001214|Name=TCONS_00001214|organism=Clytia hemisphaerica|type=CDS|length=20007bp|location=Sequence derived from alignment at sc0000007:1086988..1097129- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001214 vs. Swiss-Prot (Human)
Match: MK15 (Mitogen-activated protein kinase 15 OS=Homo sapiens GN=MAPK15 PE=1 SV=1) HSP 1 Score: 428.713 bits (1101), Expect = 9.454e-139 Identity = 201/345 (58.26%), Postives = 268/345 (77.68%), Query Frame = 3
Query: 543 MNTDIDQHILVRYEIKKRLGKGAYGIVWKGIDRKTGEIVALKKIFDAFRNQTDAQRTFREICFLQEFGSHDNVIKLLNVIKADNDKDIYLVFEFMDTDLHNVIKKGNILKDVHKRYIMYQLMKAINFIHSGNVIHRDLKPSNVLLDRECFIKVCDFGLARSVQCLTLEHGDPSLTDYVATRWYRAPEILLASPKYTKGVDMWSMGCILGEMLLGKPLFPGSSTLNQIERIMAVIPTPSRQDIDSIKSSYSTSLLDKATMRSRKNLPDLF-PDAPNDALDMVQSLLQFNPDKRMTAEEALAHPYLAKFHNPAEEHSLTYXXXXXXXXXXQLSVAEYRTKLYDSIMQ 1574
M T +D I+ RY ++++LG+GAYGIVWK +DR+TGE+VA+KKIFDAFR++TDAQRTFREI LQEFG H N+I LL+VI+A+ND+DIYLVFEFMDTDL+ VI+KG +L+DVH R I YQL++A F+HSG+V+HRD KPSNVLLD C +K+CDFGLARS+ L D ++T+YVATRWYRAPE+LL+S +YT GVDMWS+GCILGEML G+PLFPG+STL+Q+E I+ IP PS +D+ ++ S S+L + R R+ L L PD +ALD+++ LL F PDKR++A +AL HPY+ +FH P++E + DV P + VQLSV EYR+++Y I++
Sbjct: 1 MCTVVDPRIVRRYLLRRQLGQGAYGIVWKAVDRRTGEVVAIKKIFDAFRDKTDAQRTFREITLLQEFGDHPNIISLLDVIRAENDRDIYLVFEFMDTDLNAVIRKGGLLQDVHVRSIFYQLLRATRFLHSGHVVHRDQKPSNVLLDANCTVKLCDFGLARSLGDLPEGPEDQAVTEYVATRWYRAPEVLLSSHRYTLGVDMWSLGCILGEMLRGRPLFPGTSTLHQLELILETIPPPSEEDLLALGSGCRASVLHQLGSRPRQTLDALLPPDTSPEALDLLRRLLVFAPDKRLSATQALQHPYVQRFHCPSDEWAREADVRPRAHEGVQLSVPEYRSRVYQMILE 345 The following BLAST results are available for this feature:
BLAST of TCONS_00001214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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