TCONS_00001207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001207
Unique NameTCONS_00001207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1887

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001207 ID=TCONS_00001207|Name=TCONS_00001207|organism=Clytia hemisphaerica|type=transcript|length=1887bp
ATAAAATTTTCTAACAATATGTCTGGTTTCATCAAGatgataaaatatca
aaatcatctGTTTTAAAGTACCCGACACAATGGGcttattgttttgaata
ttacACCAGAGTTTCATTGAAGCAAGAGCAATCACCACAAATGTCTACAG
TTTTCGGAACTAAAAATCTCAAGACTTAGTGTTTCTCAGCAATAGAGAGG
TCTGTTTACCGTATGAAGGTCTTTCAAAGCTTTGATGTTGGCTCCTTTGT
CTCGTTTCATGTACCTCAAAATTGTGTGCATATCTCTGCTCCGCCCTCGC
TTGAAGAAGCCTCACTACCTCTCCAAACATGGCCAAATTTTTCACTCGTA
TGAACTGTAAGTACTCGATTTCACGGATAGTGATATTTCTACGCACCCTC
TTGACGATATTTCGTGTATTCCGTGAGACGTTTCGTGATTCTCTACACGA
AAGCATGATGTAAGAGAGTGAAAACATATTGATTAGGACGCCAATGTTTG
AAATGACAATACTGATGATTAACAGGAACCAAAGAACCACCAACACGTAT
TGGTACAAAATATGAGGGCTTATCTCGCAAATGAACTTGTTGTAATTCGT
GAATGAGTGTCTAACGTCCTTCACACCTTCTGTGATATCACAGAACCCCA
TCGCTGGTAATAACATATTCCCTGGTTTTGGGTGAGCGCGCGTACGTGTG
TAAGCGAACGCCAACGAATTGTTCAATTTCGACCATTTGAGCCATTCAAG
ACCGTATGATTTGAAGTTACCGTTTAGAAGGTCATCTGTGAAAACGAAGC
TCATGACATTGACCAGAACGTAGAATATTTTCACGCAAACATTCAATCCT
ACACGCATGCGTAGTTTTCCTTTCCCGCCGTTCATTGAGTAGTCGAAGTA
ATTTTGAACAAGTTTTTCGGCAGTAGTATCACTTGGGGCTTTCAGGTTGT
CTCGCAAGCTGATGATGTCTGCGTTGATGATGCGGAATAAGATGTAAGGC
ATGTAAAACATGATAGCGATGCTTGCCACGTAAAACGGAAAGTACTGGAA
TTGAATGTAAAACGTCTTGGTCATTTCTTTACAGTCCTCGTCTAATAAAT
GCGACGCTTTGTTCAAACGTCGACACAATTTCCCATCCGGGTAAATACCA
TCCAGCTCAACGTCTTTCGGGATTCCAAAATAACCCGATTCTGAAAACCG
ATATCTCATTTCTTCATAGATGTAGAAACCTTGGATCCAACAAGCGCTGT
GGACGAAATCACGTGACAGAGAGGAGTCCCCAGGAACGATACAAGAGACT
TTATCACTGAAGAAATCCACGCTCATGATCAGTGATGAGATCAAGAAGAT
TTTGGCCATGAAGATTCTGCTGAACTGATCAGTGACGTCATCATGACGTG
GTTTCATCTTGATGGATAAGATATCCTTTATATTGCCTGTGATGATGGTC
ATCTTGGTTCGAGCAACAAAACTTGTCACCGGCACTCTTGGTAAATAAAA
TCCCTTTAATCCGCAAAACCTTTCTGATAGCGCTGGAcaccaaaataaaa
caatcctcCTTAATTGACTAAGTTTGATCTTAACTTGGCGCTTCAACTTT
GTGATCCTTGGTATTTGAAAGCCTTGTGAAATGCCTTCCTTTTATATTTC
TTTCAGAAAGTTGTATGACCTGTATGGGACGATTGAACAAAGCAATGTCG
CTCTCCTTCTTGCGTCTCTTCCCTGTGACGGTCGACCAATCAATAAGGGC
GAAAAGATGAGAGAAGGAGTGACCAAGATGGTGCAAAACGTGTTGATGTT
TGATGAATCGCCTTTTGATGGGATTTGGATCAACAATCTTTTGATTGGCT
AATTGTCTTAAAGAGGTATGTTACTCAGTAAGCCGAT
Run BLAST on NCBI

protein sequence of TCONS_00001207-protein

>TCONS_00001207-protein ID=TCONS_00001207-protein|Name=TCONS_00001207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp
MTIITGNIKDILSIKMKPRHDDVTDQFSRIFMAKIFLISSLIMSVDFFSD
KVSCIVPGDSSLSRDFVHSACWIQGFYIYEEMRYRFSESGYFGIPKDVEL
DGIYPDGKLCRRLNKASHLLDEDCKEMTKTFYIQFQYFPFYVASIAIMFY
MPYILFRIINADIISLRDNLKAPSDTTAEKLVQNYFDYSMNGGKGKLRMR
VGLNVCVKIFYVLVNVMSFVFTDDLLNGNFKSYGLEWLKWSKLNNSLAFA
YTRTRAHPKPGNMLLPAMGFCDITEGVKDVRHSFTNYNKFICEISPHILY
QYVLVVLWFLLIISIVISNIGVLINMFSLSYIMLSCRESRNVSRNTRNIV
KRVRRNITIREIEYLQFIRVKNLAMFGEVVRLLQARAEQRYAHNFEVHET
RQRSQHQSFERPSYGKQTSLLLRNTKS
Run BLAST on NCBI

transcript from alignment at sc0000007:1015374..1017260-

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001207 ID=TCONS_00001207|Name=TCONS_00001207|organism=Clytia hemisphaerica|type=transcript|length=1887bp|location=Sequence derived from alignment at sc0000007:1015374..1017260- (Clytia hemisphaerica)
ATAAAATTTTCTAACAATATGTCTGGTTTCATCAAGATGATAAAATATCA
AAATCATCTGTTTTAAAGTACCCGACACAATGGGCTTATTGTTTTGAATA
TTACACCAGAGTTTCATTGAAGCAAGAGCAATCACCACAAATGTCTACAG
TTTTCGGAACTAAAAATCTCAAGACTTAGTGTTTCTCAGCAATAGAGAGG
TCTGTTTACCGTATGAAGGTCTTTCAAAGCTTTGATGTTGGCTCCTTTGT
CTCGTTTCATGTACCTCAAAATTGTGTGCATATCTCTGCTCCGCCCTCGC
TTGAAGAAGCCTCACTACCTCTCCAAACATGGCCAAATTTTTCACTCGTA
TGAACTGTAAGTACTCGATTTCACGGATAGTGATATTTCTACGCACCCTC
TTGACGATATTTCGTGTATTCCGTGAGACGTTTCGTGATTCTCTACACGA
AAGCATGATGTAAGAGAGTGAAAACATATTGATTAGGACGCCAATGTTTG
AAATGACAATACTGATGATTAACAGGAACCAAAGAACCACCAACACGTAT
TGGTACAAAATATGAGGGCTTATCTCGCAAATGAACTTGTTGTAATTCGT
GAATGAGTGTCTAACGTCCTTCACACCTTCTGTGATATCACAGAACCCCA
TCGCTGGTAATAACATATTCCCTGGTTTTGGGTGAGCGCGCGTACGTGTG
TAAGCGAACGCCAACGAATTGTTCAATTTCGACCATTTGAGCCATTCAAG
ACCGTATGATTTGAAGTTACCGTTTAGAAGGTCATCTGTGAAAACGAAGC
TCATGACATTGACCAGAACGTAGAATATTTTCACGCAAACATTCAATCCT
ACACGCATGCGTAGTTTTCCTTTCCCGCCGTTCATTGAGTAGTCGAAGTA
ATTTTGAACAAGTTTTTCGGCAGTAGTATCACTTGGGGCTTTCAGGTTGT
CTCGCAAGCTGATGATGTCTGCGTTGATGATGCGGAATAAGATGTAAGGC
ATGTAAAACATGATAGCGATGCTTGCCACGTAAAACGGAAAGTACTGGAA
TTGAATGTAAAACGTCTTGGTCATTTCTTTACAGTCCTCGTCTAATAAAT
GCGACGCTTTGTTCAAACGTCGACACAATTTCCCATCCGGGTAAATACCA
TCCAGCTCAACGTCTTTCGGGATTCCAAAATAACCCGATTCTGAAAACCG
ATATCTCATTTCTTCATAGATGTAGAAACCTTGGATCCAACAAGCGCTGT
GGACGAAATCACGTGACAGAGAGGAGTCCCCAGGAACGATACAAGAGACT
TTATCACTGAAGAAATCCACGCTCATGATCAGTGATGAGATCAAGAAGAT
TTTGGCCATGAAGATTCTGCTGAACTGATCAGTGACGTCATCATGACGTG
GTTTCATCTTGATGGATAAGATATCCTTTATATTGCCTGTGATGATGGTC
ATCTTGGTTCGAGCAACAAAACTTGTCACCGGCACTCTTGGTAAATAAAA
TCCCTTTAATCCGCAAAACCTTTCTGATAGCGCTGGACACCAAAATAAAA
CAATCCTCCTTAATTGACTAAGTTTGATCTTAACTTGGCGCTTCAACTTT
GTGATCCTTGGTATTTGAAAGCCTTGTGAAATGCCTTCCTTTTATATTTC
TTTCAGAAAGTTGTATGACCTGTATGGGACGATTGAACAAAGCAATGTCG
CTCTCCTTCTTGCGTCTCTTCCCTGTGACGGTCGACCAATCAATAAGGGC
GAAAAGATGAGAGAAGGAGTGACCAAGATGGTGCAAAACGTGTTGATGTT
TGATGAATCGCCTTTTGATGGGATTTGGATCAACAATCTTTTGATTGGCT
AATTGTCTTAAAGAGGTATGTTACTCAGTAAGCCGAT

Coding sequence (CDS) from alignment at sc0000007:1015374..1017260-

>TCONS_00001207 ID=TCONS_00001207|Name=TCONS_00001207|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0000007:1015374..1017260- (Clytia hemisphaerica)
TCAAGACTTAGTGTTTCTCAGCAATAGAGAGGTCTGTTTACCGTATGAAG
GTCTTTCAAAGCTTTGATGTTGGCTCCTTTGTCTCGTTTCATGTACCTCA
AAATTGTGTGCATATCTCTGCTCCGCCCTCGCTTGAAGAAGCCTCACTAC
CTCTCCAAACATGGCCAAATTTTTCACTCGTATGAACTGTAAGTACTCGA
TTTCACGGATAGTGATATTTCTACGCACCCTCTTGACGATATTTCGTGTA
TTCCGTGAGACGTTTCGTGATTCTCTACACGAAAGCATGATGTAAGAGAG
TGAAAACATATTGATTAGGACGCCAATGTTTGAAATGACAATACTGATGA
TTAACAGGAACCAAAGAACCACCAACACGTATTGGTACAAAATATGAGGG
CTTATCTCGCAAATGAACTTGTTGTAATTCGTGAATGAGTGTCTAACGTC
CTTCACACCTTCTGTGATATCACAGAACCCCATCGCTGGTAATAACATAT
TCCCTGGTTTTGGGTGAGCGCGCGTACGTGTGTAAGCGAACGCCAACGAA
TTGTTCAATTTCGACCATTTGAGCCATTCAAGACCGTATGATTTGAAGTT
ACCGTTTAGAAGGTCATCTGTGAAAACGAAGCTCATGACATTGACCAGAA
CGTAGAATATTTTCACGCAAACATTCAATCCTACACGCATGCGTAGTTTT
CCTTTCCCGCCGTTCATTGAGTAGTCGAAGTAATTTTGAACAAGTTTTTC
GGCAGTAGTATCACTTGGGGCTTTCAGGTTGTCTCGCAAGCTGATGATGT
CTGCGTTGATGATGCGGAATAAGATGTAAGGCATGTAAAACATGATAGCG
ATGCTTGCCACGTAAAACGGAAAGTACTGGAATTGAATGTAAAACGTCTT
GGTCATTTCTTTACAGTCCTCGTCTAATAAATGCGACGCTTTGTTCAAAC
GTCGACACAATTTCCCATCCGGGTAAATACCATCCAGCTCAACGTCTTTC
GGGATTCCAAAATAACCCGATTCTGAAAACCGATATCTCATTTCTTCATA
GATGTAGAAACCTTGGATCCAACAAGCGCTGTGGACGAAATCACGTGACA
GAGAGGAGTCCCCAGGAACGATACAAGAGACTTTATCACTGAAGAAATCC
ACGCTCATGATCAGTGATGAGATCAAGAAGATTTTGGCCATGAAGATTCT
GCTGAACTGATCAGTGACGTCATCATGACGTGGTTTCATCTTGATGGATA
AGATATCCTTTATATTGCCTGTGATGATGGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000655XLOC_000655Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001207-proteinTCONS_00001207-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001207-exon-sc0000007-1575043694:1015374..1017260TCONS_00001207-exon-sc0000007-1575043694:1015374..1017260Clytia hemisphaericaexon
TCONS_00001207-exon-sc0000007-1510915933:1015374..1017260TCONS_00001207-exon-sc0000007-1510915933:1015374..1017260Clytia hemisphaericaexon
TCONS_00001207-exon-sc0000007-1491911889:1015374..1017260TCONS_00001207-exon-sc0000007-1491911889:1015374..1017260Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1015374..1017260 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0916396	0.146079	0.110631	0.161102	0.117667	0	0.0731059	0	0	0	0	0.0175613	0.0502891	0.0363297	0.0140348	0.0655057	2.28364	3.61488	0.152973	0.0309519	5.6558	5.33512	0.666843	1.23692	1.02266	0.949057	0.393129	0.216448	0.0897308	0.0321922
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000990Innexin
Vocabulary: Cellular Component
TermDefinition
GO:0005921gap junction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005921 gap junction
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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