TCONS_00001196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001196
Unique NameTCONS_00001196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2006

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001196 ID=TCONS_00001196|Name=TCONS_00001196|organism=Clytia hemisphaerica|type=transcript|length=2006bp
CGATGATAgcgaaatgaaatattttcacTTGTTACTTACTTTATTGATTC
CTGAATTTTCATTGGCTGTGTGGTTTCCGAAACCATGTGTGGAGATACGT
TGCCAGGCCCGTTACGCTGGTTACCAGCCTACCGTCATCCCTGAAGGGAA
ATGCatcaaacaaataaataaagtgGTTCACATCAATACACCTATAGTGA
AAATGGGGAGTTGCAGAAGTAAAAGATGTACGGAAGTTGATAAAACGAGA
ACAGCGTGTTCATGCAGAGAGGTCACGAATTGTTGGTGGGCTAGTTGGGG
AGCTTGGACAGGTTCAATAACACAAGGGACCTGTGGAAAACAACATCGTA
GACGAGCTGAGAAAGACAGAGCAAGATATGTGGAAAGATATGGAAGTTGT
AGTGGAGTAAAAGGCCAATGCAATGGAAGTTACAACTCAGAAGATCGAAC
CATGTGTAATTGCAGGAAAGCAAGTAGTTGTCCAGTAGCACCATGGAGTT
CGTGGACACCAGCAGTTGGTAATGGACAATGTAAAGACCAAACACGACAC
CAAGACAAAAAGCCTTCATACACTTACGTTATGAAAGAACAGAAGAAAGG
AGAAGTGGCTTGCTTTGGCATCGATCCTGATTGTCGACCACCAAGAATTA
CTGATACAAGAACATTCTGTAAATGTCCGACGAAGGAATGCACAGAGAGA
AGTTGGACATCTTGGAATATCGACACATGGACGGGAAGCTGCCCAAATGA
GAAGAGGACCAAAACATatgatttcaaaatcaaatataTTGAGGCTTACA
AGAGCTGCAATGGTGTAGGAAAAGATTGCCCACCTACCAAGAACGAGTAT
AGAAAAAAAGTGATCAAATGTCCAGCAATCAAGTTATCACTAAACTCCAT
CCACCTTGACAAATCATGCAATGGAGTAGACAGCTCATGTACATCTGTCT
GTCGCATTGACTGTAAGAAAGGCTACAAGCTGATTGGTCAAAACCATGTC
ACGTGTCACGGATCAGGAAAATGGACAGGAAAACTAGGGTATTGTAAAGA
TTCTGAGCCACCGACGATAACATGTCCTAAATTGCCAATTCCAACCGTCA
ACAACAAGCCAGGCACCAATTACTCCATCATCTCATTCCCCAATGCGACG
GCAACCGATAATTCAGGTTTTCCAGTGACAATCACCACAAGTCATCCATC
ACCACTGAAAGTGTTCGTTCACCATCCAGTTGAAGTTACTTACACTGCTA
CTGATGCTGTTGGAAACACCAATAAATGCAAACGGAAATTCATCGTCAAA
GATCACGAGGCACCAGTTGTAACTTATTGCCCCAAAAAACATCGAATCAT
CAAAACAGGGTTATTCCCACACCGAGTATTTTGGCCCATGCCACGCTTCA
CAGACAACGTGGAGGCTGACAACGAGTTGGTCTTCATCCCTTCCGTGGTG
AATGGAACTAAGTTCTACCAAGGGAAACACAGTGTTGATATCAAAGCCAG
AGATAAATCATCCAATACTGGAAACTGCACCATGACATTCGAGCTCCAAA
TGTTGAAATGCCCAGTGGATGCGCCACCCAAGCATGGTTCCGCCACATGC
AACATTAAGAACAACGGGAAAGTTGAAGCTTTCATTTGTACTGCAGCTTG
TCAAAAAGGTTCATGGTTTCTGGAAGGTGCAAACATTCCGAAAGTGTACA
ATTTGTATGTGTGTTCGATGGATGGAGCATGGCAAGGTGCAAGTGTTTTC
AACTTTGACAACTTGGTACACTCTCCTATGGTTCCTATCAATAGAGGAGA
TCCTATGTGGCCAGACTGCTCAGTGGGCAAGTCACCAAACGGCGTGGCGC
TAGATATGCAAATCTTCAGTGGCAAATGTTCAGACCAAGCCTCTATGGAA
AAGTTGAAGCGTGATTTTGTCGCAACGTTGAAGAAAGATTTCATTTGGGG
AGCAGCATTCTgttcacaacaacaacaatgtGATGTGGAGAATGCTGTTG
TGTNtt
Run BLAST on NCBI

transcript from alignment at sc0000007:930008..937677-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001196 ID=TCONS_00001196|Name=TCONS_00001196|organism=Clytia hemisphaerica|type=transcript|length=7670bp|location=Sequence derived from alignment at sc0000007:930008..937677- (Clytia hemisphaerica)
CGATGATAGCGAAATGAAATATTTTCACTTGTTACTTACTTTATTGATTC
CTGAATTTTCATTGGCTGTGTGGTTTCCGAAACCATGTGTGGAGATACGT
TGCCAGGCCCGTTACGCTGGTTACCAGCCTACCGTCATCCCTGAAGGGAA
ATGCATCAAACAAATAAATAAAGTGGTTCACATCAATACACCTATAGTGA
AAATGGGGAGTTGCAGAAGTAAAAGATGTACGGAAGTTGATAAAACGAGA
ACAGCGTGTAAGTGGGTTTTGTTGAGACTTAGAAATTACCCTGACTAAAC
ACCATTCGAATTATCAGCTCATGCTCCGATTACGATAAAATTGGAATTGC
TGATGAAATATTACCACGCACTATAATTTTCATGAAAGAAATTCTCCAAA
ATTTGAAAAACGAAAATAAAAGATGAAGAAGAAAGAATGATCTTTTTATC
CGTTTTCACTATAAAATGAAATTGACTTTTGGTCAAAGATATTTTGAACC
TTGCTGATTCGAGAAACACTTTTCATTTCTTCCTTACATCAAAAGTTATA
ATTCTTGGGGAGATGAAAACAGCAAAAAAATCAAAAACCATTTAGGGCCT
GTAACTTTTCATGAAGCTATGGAAAACATATTCTACAGTGAAAGGAAACG
AAATGGAGCTGAAGTTTTTTCTGTTACAAGGACAACACTTTACCAAGCTA
TTTTCACTCGTCTTCATCTTTAATAAGGGCAAAAATCAAAGGTTGCTAAT
TTCGTGTTTCCAAAGCTTTTGAGGAAAAAGAGTCAACTGTAAAACTGTAA
AAGTTCTGTTTGATGTAATGTAAGTTTCATATCCTAAATTTCAGAACACA
TCGTAGATAAAAAAAACAAGTGATACTTTTATGGACCTACCTGGTTGTGC
ATTTAACAAATTTATAATTAATATCTACGTGACGTGACCATCAAACAATC
ATTCAGAACACAAATAGTGACGATCTATCAAAAGTCGTTTGTTTCTTATA
AAAAAACATTTGGAAACCAAAATTTCATGCTCTTGAAATATTCTTCCATA
TTCAAGACTTCGTGAGCAAAAAAACATCCATCTCGTCAAAAAATCGAGTA
GTTTGGCTAAGAAAATTAATGTATGCTTATTAATAGTGATTCTTATAGAT
AAAAATAATTTTTTGAGCTGAAAAATTCTTCTTTTACAAAAATCTGCTTG
AGCCATCTATTACCTACTTTCATGCAAAAAATCAGAAAAAAACAATGATC
CAATATTTCACAAAGTCCAAAAAACTCTTTTTTTTGGCCGTTTTTTAGCT
GAAATTTACCCCCGGGGGGGGGCACTGGGTTTGCGGACTGACGGTATGTG
CGGGCCAAAAATTGGCTTTTAAAATTGCACCCTTACAGTGCAGCAAAAAT
CAGAGAAAATCATACCCTTAGAGTGCATTTTCCCCCAAATTTTTGATCCC
TTTCGTGCAAAAATTGGTCAAAATTCTAGCATTTTTGGTCAAAATATCTA
GATTTTTCAAGAATTTTCTAAAATTTCTACCCTTACAGTGCATCTCTAGT
TTTTCCGACCCTTACAGTGCATTTTAAACATATTGGAAAAGGTACCCTTA
GGACCCGCACATACCCGTCGGTTCTTTTGCCCAGCTGCCCCCCCCCCCGG
GAATTTACCCCAAATTTTTTTTTCAAAAAATCGAGCTCCGTCACATTCGA
GGGTTTATAGTTACACATCTTTGTGCAAATAATCAGAAAAAACTAATGAG
CTAATCTCGAGAAAAATTGGTAACGAACGAACGGACGAACGAACAGAGGT
TAATCCGAGGTTAATTTATAGGACCTCCACCGGGGTAGGTCCAAAAAATT
TGAAAAATACCAAGGAGCTGAAGTGTTCAAAGTGAGAAAAAAAGGACAAA
CTCAGTGGAAATCTATAACATAAGGCCTCTTGAATCTTTACGTTTGCAAA
CTCTTAATTCTTTTCAAATGCAGGTTCATGCAGAGAGGTCACGAATTGTT
GGTGGGCTAGTTGGGGAGCTTGGACAGGTTCAATAACACAAGGGACCTGT
GGAAAACAACATCGTAGACGAGCTGAGAAAGACAGAGCAAGATATGTGGA
AAGATATGGAAGTTGTAGTGGAGTAAAAGGCCAATGCAATGGAAGTTACA
ACTCAGAAGATCGAACCATGTGTAAGTTATATCCTGAAGTCTTTCAGCTT
TTTGTTTACATAGTTTCGGTGGCAATTTGATCTACTAATATTAATATTTC
AATTAGCCGTCCTGGAATCGTCTCTTGAGATGACTCTTTACAATGATAAT
CAAGCTCGCGAGACATTAAATGTATCTCATCCTTATGAGAGATATGTAAC
CGATTTCCTGTATTTTCCAAGGAAAAAAAGAACTACAATATTTTCTTGTA
TATTGATTGGAACATTGATTATAAAACGCAGTTTCCTGCATTTTCCAAGG
AAAATTATGTATGTCTTGTAGTTTCAAAGGAAAATTAGACAAACACATTT
CTTTTTTTGGTAATAGAAACAACCTAAAGCAAATTCTTGTATTTTCCAAG
GAAAATCGGCCAAGACAATTTCTTGTATTTTCCAAGGAAAAAATTACATA
AGATAAAATGTTTCAAGAAAATTGTCTAAATTAATTTTTTGCTACTTTCA
CCCTTTCACCAAGTTGATTTTGCAAGAAAGTTAAAAAAGGAGTTATTTTG
AAAGCAAACCGAATCGAAACTGGCATATTTTAATAGACTAAAACTATAAT
TTTACAAGAATAATCCTTATGCTAGGAGTTGTTCAGCCATCGTGGCTAGC
GATGGTGGGTGGACATTCGTGGGTGGCTTTGAAAGTTATTTGAAAATGAA
AAAGAAAAAGAAAATGAGTGTTAAATTTCAAAGCGCTCTTGAAAATGTTC
AAAAAATAAGATTAGAAAAAAGGAACGAAAAAATGCATGTTTTCACGGTT
TTCATTTTAAGGCTGAAAATTAAAGACCAAATACAGAAAAGGCGCGAAAA
AGAGTTGCCATTTCCAAAAGAATCGCTAGCGAAAAAGTTTTATGCGAGAA
TGAGAGAGTTCGGATTTAAGCGTATTATGATAATGATTATTTTAAATATC
AACTTCTCATACATGGAATACTGTTTTAATCTTTAGGTAAATTCTCTCCA
CTTTAAAAGACATTTCAGGAAATCCAGTTAAATCATGCCTCCTATCTTTT
TCATGATTTGTAGGTAATTGCAGGAAAGCAAGTAGTTGTCCAGTAGCACC
ATGGAGTTCGTGGACACCAGCAGTTGGTAATGGACAATGTAAAGACCAAA
CACGACACCAAGACAAAAAGCCTTCATACACTTACGTTATGAAAGAACAG
AAGAAAGGAGAAGTGGCTTGCTTTGGCATCGATCCTGATTGTCGACCACC
AAGAATTACTGATACAAGAACATTCTGTAAGATAATTTTCATCGACTCGA
CTTTCGAAGACAATTATTTGTTAGTTTTAGTTGGTCTGTTGTTTCATAGT
CTGTGCTTCTTGCAGAAGGAATTTTCAAAATATTTTTGAAACGAATAAGC
GTTTGATTCAATCAAAAAGTGTGAGAAAGCTATGTTAAGATCTATCAGTT
TTGACAATCTCAAAGAAGCCTTCTTTTAACCGAATACATTTCTACATTCA
GGTAAATGTCCGACGAAGGAATGCACAGAGAGAAGTTGGACATCTTGGAA
TATCGACACATGGACGGGAAGCTGCCCAAATGAGAAGAGGACCAAAACAT
ATGATTTCAAAATCAAATATATTGAGGCTTACAAGAGCTGCAATGGTGTA
GGAAAAGATTGCCCACCTACCAAGAACGAGTATAGAAAAAAAGGTTGACA
ACTTTGACTCGATGTTGTATCTTCATCATAAGTACCTTTTAATTGTCTCT
CTGATTCTTATCATTTAGCAAACATCAAATTGTGAGTTTCCGAGAAGTCA
GCAGTACATATGAGCCAAATCAAAACAAAAATTTCGGGTGTTAAAATACG
GCAAACTATAAACTTTTGATCTATGGTAGTACAGCGGAGTCTCCATAACT
CGGACACAATTTGTTCGAGTTAAGGAGACATTTAAGTTATAGAGGTTCGA
GATAAAGAGACTCCACTATATCTTACGTCATCTTCTAATATTTCCAGTGA
TCAAATGTCCAGCAATCAAGTTATCACTAAACTCCATCCACCTTGACAAA
TCATGCAATGGAGTAGACAGCTCATGTACATCTGTCTGTCGCATTGACTG
TAAGAAAGGCTACAAGCTGATTGGTCAAAACCATGTCACGTGTCACGGAT
CAGGAAAATGGACAGGAAAACTAGGGTATTGTAAAGGTAAGATACAATAA
AACTTGTCATTGCAAACCATTCTATCGAAATTTATCGTAGAATTTAACAA
TTTCTCCTGGAAAGAATTCCAATTACATGTTATGATCAGGAACCAAGATA
TTCAAAATACACTATTTCCACTGAACTTCGCTCGTCTGACTTTGTTTTTC
ACTCATTATGGCACCATATTTTTAGATTCTGAGCCACCGACGATAACATG
TCCTAAATTGCCAATTCCAACCGTCAACAACAAGCCAGGCACCAATTACT
CCATCATCTCATTCCCCAATGCGACGGCAACCGATAATTCAGGTTTTCCA
GTGACAATCACCACAAGTCATCCATCACCACTGAAAGTGTTCGTTCACCA
TCCAGTTGAAGTTACTTACACTGCTACTGATGCTGTTGGAAACACCAATA
AATGCAAACGGAAATTCATCGTCAAAGGTAGACATTTTTGAATATCATTA
CTGCCGTTGGTTATAGGTTTTGTGAGTGAGGACAAGTTATTTTACTGAGA
TGAAAAGAAGTCATTGGAATTTTAACTAGACAAAAAAGATGTAAGACTGC
CACCAGCACAATATGTTCTCACTTCTTTTATACTGTTCTCACTTCTTTTA
TACTGTTCATACTTCTTTTATACTGTTCATACTTTTTATTGCCGGTAGCA
ATAATTTTGAATCTTCAAGATGTTGACAAGGCTTTATAAATGAAATGATT
TCCTATTTTAAACCCTCAAACCCATTTCTAGATCACGAGGCACCAGTTGT
AACTTATTGCCCCAAAAAACATCGAATCATCAAAACAGGGTTATTCCCAC
ACCGAGTATTTTGGCCCATGCCACGCTTCACAGACAACGTGGAGGCTGAC
AACGAGTTGGTCTTCATCCCTTCCGTGGTGAATGGAACTAAGTTCTACCA
AGGGAAACACAGTGTTGATATCAAAGCCAGAGATAAATCATCCAATACTG
GAAACTGCACCATGACATTCGAGCTCCAAAGTAAGTAAACAAAAAACATG
GCATTCGTTATTGTCAAAGTTAGGTAGCAAATAAAAATGAAAGGAAAGGC
AATAGAGTGTCTTTGCAAATAATTAAAAAAAAAAACTAAAAACAGGTTTT
ACTACATAAAGAGTTTCTGATGAACATGTGAGGGCTATCGAAACTTTTAA
CTAATTAACTTTCTAGTGTTGAAATGCCCAGTGGATGCGCCACCCAAGCA
TGGTTCCGCCACATGCAACATTAAGAACAACGGGAAAGTTGAAGCTTTCA
TTTGTACTGCAGCTTGTCAAAAAGGTTCATGGTTTCTGGAAGGTGCAAAC
ATTCCGAAAGTGTACAATTTGTATGTGTGTTCGATGGATGGAGCATGGCA
AGGTGCAAGTGTTTTCAACTTTGACAACTTGGTACACTCTCCTATGGTTC
CTATCAATAGAGGAGATCCTATGTGGCCAGACTGCTCAGGTATCTCTGAT
GATTTTCTCGGGTTCAAAGCCAAGGGTAGACTCCTAAGTGTTCACATTAA
CTCCTTCGCATATAATTCATCTTTGGGTTATAATCACAATAGTGTATAAA
AGATTTTAGCAGCCTATAGACACATCAAAACGAGAGGTTTAATAGTTTAT
TTTCTTATCTTCGAACCGAAAATAACTTTATTTATTTACTATTTCTCCAA
AATGAGACACTCACCCCCACTCAAAAAGGATAGGAAGAGAAAGACACACA
AATTTTACGAGACAGGTTTCACACTTATTCTAATAGTAATAGTCGGGTCC
AAGCCTCTCAAAATAAATACATTTATTTTCCTTACCAAATANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTGTTTGGAAGAAACCGTAAG
GAATTGAAAATTCGAGTTATGCTTCATAGTCAGATACCCTCATCCTCTTC
TAACTGTCCACTTACCTTTATTTTATAAAATTATACCCAATGATTTAATA
GTTTTTGTCTTGTGCTCCCTCGCACCGTATATGTGCTCCCTCACACCGTA
TAATGTACTCCCTCGCACCGTATATGTACTCCTTCACAATTATTTATGTA
TGATAATATATCATCGTCTACTTAAAATCTACATAAATTGCTAAGGGAAG
TAACTAATAGCTAATGGAACTGTGGCGAAGTTGCTAGAGTTTGCAAGAAG
TTACTAGTTGAGAGCTTGCCGACGTGTGAATAGCATCACTCAGAACACCC
TTTTGAATTGCACGCTTCTGATCTTTAATTTTCGGAACGCAAATTAAAAC
CAAAATCGACATTTTATCCGAAACCGTAAATAAATTCATTTAGTTTGAAG
ATATTTTATCTTATATTACACATTTTTTTATATAAATAACCAGCTTGTAT
TGGTAAGGCTAAAGGGCTCAGATTAGCCATTTTTTTTTACTATCTCGTAA
AGTATAAGTTAACCATGGCAGGCCTAGCCTGGATATCTAAGCTGTAAACT
TTTTTTTCTTCTAGACGTTCCTGGTTTCCTTCAGTCTTCCTAAATCCTAA
ATCGATTTATATTCTAAAATCGGAGACAGCGCATGCGTACTTTGTCGATT
TAATAATTCAATAAAAGCTAAAAATTTACCGGCCCCGGGTTTACAAGCAT
CTAGGTAGACCAAGCTATTGAAAACATCAAAATACAAAGCAATTTACAGC
TTGGTCATTCAGGCTACTCTTGACCCATTAAGCATAAACATGGTATAATA
TCAAGGATACTTTTTCACAAAATGAGTTAGAATACTGAGCCCAGGCCCTG
ACGCGAAATTTTGAGTTTCTTATAATGAAAAAATGTGTAATAAACCTTGT
TAGCTATCATATATGTTCACAAAATTTCTGTCTTTAGTGGGCAAGTCACC
AAACGGCGTGGCGCTAGATATGCAAATCTTCAGTGGCAAATGTTCAGACC
AAGCCTCTATGGAAAAGTTGAAGCGTGATTTTGTCGCAACGTTGAAGAAA
GATTTCATTTGGGGAGCAGCATTCTGTTCACAACAACAACAATGTGATGT
GGAGAATGCTGTTGTGTNTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000649XLOC_000649Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001196-exon-sc0000007-1575043694:937421..937677TCONS_00001196-exon-sc0000007-1575043694:937421..937677Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1575043694:935507..935704TCONS_00001196-exon-sc0000007-1575043694:935507..935704Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1575043694:934252..934464TCONS_00001196-exon-sc0000007-1575043694:934252..934464Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1575043694:933835..934026TCONS_00001196-exon-sc0000007-1575043694:933835..934026Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1575043694:933342..933530TCONS_00001196-exon-sc0000007-1575043694:933342..933530Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1575043694:932901..933152TCONS_00001196-exon-sc0000007-1575043694:932901..933152Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1575043694:932348..932596TCONS_00001196-exon-sc0000007-1575043694:932348..932596Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1575043694:931889..932161TCONS_00001196-exon-sc0000007-1575043694:931889..932161Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1575043694:930008..930190TCONS_00001196-exon-sc0000007-1575043694:930008..930190Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1510915933:937421..937677TCONS_00001196-exon-sc0000007-1510915933:937421..937677Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1510915933:935507..935704TCONS_00001196-exon-sc0000007-1510915933:935507..935704Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1510915933:934252..934464TCONS_00001196-exon-sc0000007-1510915933:934252..934464Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1510915933:933835..934026TCONS_00001196-exon-sc0000007-1510915933:933835..934026Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1510915933:933342..933530TCONS_00001196-exon-sc0000007-1510915933:933342..933530Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1510915933:932901..933152TCONS_00001196-exon-sc0000007-1510915933:932901..933152Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1510915933:932348..932596TCONS_00001196-exon-sc0000007-1510915933:932348..932596Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1510915933:931889..932161TCONS_00001196-exon-sc0000007-1510915933:931889..932161Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1510915933:930008..930190TCONS_00001196-exon-sc0000007-1510915933:930008..930190Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1491911889:937421..937677TCONS_00001196-exon-sc0000007-1491911889:937421..937677Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1491911889:935507..935704TCONS_00001196-exon-sc0000007-1491911889:935507..935704Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1491911889:934252..934464TCONS_00001196-exon-sc0000007-1491911889:934252..934464Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1491911889:933835..934026TCONS_00001196-exon-sc0000007-1491911889:933835..934026Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1491911889:933342..933530TCONS_00001196-exon-sc0000007-1491911889:933342..933530Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1491911889:932901..933152TCONS_00001196-exon-sc0000007-1491911889:932901..933152Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1491911889:932348..932596TCONS_00001196-exon-sc0000007-1491911889:932348..932596Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1491911889:931889..932161TCONS_00001196-exon-sc0000007-1491911889:931889..932161Clytia hemisphaericaexon
TCONS_00001196-exon-sc0000007-1491911889:930008..930190TCONS_00001196-exon-sc0000007-1491911889:930008..930190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:930008..937677 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.263837	0.139226	0.128211	0.113051	0.0532484	0.0210388	0	0	0	0.0322675	0	0.0913187	3.51801	4.24964	2.19661	2.32823	1.08966	1.33037	16.0398	14.8379	2.72076	3.96066	2.01066	3.352	16.9259	12.8532	0.562474	0.294514	2.30125	3.25923
Blast
[Close]
BLAST of TCONS_00001196 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 8.045e-27
Identity = 107/381 (28.08%), Postives = 159/381 (41.73%), Query Frame = 2 
Query:  869 CPAIKLSLNSIHLDKSCNGVDSSCTSVCRIDCKKGYKLIG-QNHVTCHGSGKWTG--KLGYCKDSEPPTITCPK-LPIPTVNNKPGTNYSIISFPNATATDNSGFPVTITTSHPS--PLKVFVHHPVEVTYTATDAVGNTNKCKRKFIVKDHEAPVVTYCPKKHRIIKTGLFPHRVFWPMPRFTDNVEADNELVFIPSVVNGTKFYQGKHSVDIKARDKSSNTGNCTMTFELQMLKCPVDAPPKHGSATCNIKNNGKVEAFICTAACQKGSWFLEGANIPKVYNLYVCSM-DGAWQGASVFNFDNLVHSPMVPINRGDPMWPDCSVGKSPNGVALDMQIF--SGKCSDQASMEKLKRDFVATLKKDFIWGAAFCSQQQQCD 1984
            C   ++  + I    +C    +   ++C + C++G+ L G +  + C  SGKW    +   CKD E P I CPK +   T+  +   N   +++   TA DNSG  V++   HP+  P  +F    V + YTATD  GN   C     V D E PV+ +C +    ++     H   W  P+F+DN  A  ELV   S   G  F QG+  V   A D S N   C +   ++   C +   P +G   C   N G      CT  C +G  F EG+      + Y C+  DG W+                        WPDC+  +  N      ++F  + +C D   M+K    F  TL K      +FCS  +  D
Sbjct:  498 CSTFQMPKDVIISPHNCGKQPAKFGTICYVSCRQGFILSGVKEMLRCTTSGKWNVGVQAAVCKDVEAPQINCPKDIEAKTLEQQDSAN---VTWQIPTAKDNSGEKVSVHV-HPAFTPPYLFPIGDVAIVYTATDLSGNQASCIFHIKVIDAEPPVIDWC-RSPPPVQVSEKVHAASWDEPQFSDNSGA--ELVITRSHTQGDLFPQGETIVQYTATDPSGNNRTCDIHIVIKGSPCEIPFTPVNGDFICTPDNTG----VNCTLTCLEGYDFTEGST-----DKYYCAYEDGVWKPTYTTE------------------WPDCAKKRFANHGFKSFEMFYKAARCDDTDLMKKFSEAFETTLGKMV---PSFCSDAEDID 841
The following BLAST results are available for this feature:
BLAST of TCONS_00001196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SVEP18.045e-2728.08Sushi, von Willebrand factor type A, EGF and pentr... [more]
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