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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001184 ID=TCONS_00001184|Name=TCONS_00001184|organism=Clytia hemisphaerica|type=transcript|length=2588bp
GCGAAGATGTACAAAATTGATCATGATTTTTATATTAATTGAAAGAAATG
AGCTGAAAATACCGTATTACAAATGAGCTTCGTATGTAAAATATACGTAA
ATCCCTTTGTACCGACAGGACTAATTCTCGCGAATCactaactttaaaaa
aatcaacGTAAAACAATACTCACCCTCGATAAAACCCGTTTCGGGGTCAA
GGTTAGagtaattgaaaaaaatttcaagaactCGCATAGAGACGATATTC
TGTTCGACTCCAATAAAGCCTCTGCGTTGTTGAaaaaaaggaccaaaaaa
aaccatcggaaaaagaattaaaatgaaAACTACTAGCGAAAATCGAGGGA
ACTGAACATGAAAATACTAATAAATACATGatactaaaaaaataatttac
tgATACGGTATGTTAAAAACATCCTACCATGACAAAGTTCAAAGGATAAA
AACAAATACTAAAACATTGTTACAAATACCTCGAAAACTGATTCACGAAA
AATggcaaatgaaaagaaaattctctgttacaaaaattcaggaaaaggaA
AACTACCGATAACTTTCTCATACATTCCAAATTCAAAAAACGGCCTGAAA
CTTTAAAGAAGTTATCAATATATACTCTGTATAAAACTAGAAATTTCTAT
TTTGCATAGTAAAGCtttaaaaatacttaaaaatgtTCGTTTGGATTTAT
TTAGCCTCAGTAACTTTTATGAAATATGTAGGGTTATCGTCGAACTCTTC
CGGTTCTGGCATTGGAGAAACATTCGTTGCATCTAACAAAGTGTTCTCAG
TTTTATCAGCTGCTTCATCAGACTGTCCGACTTCCTCAACTTTCATTACA
GGAAGTTCATCAGCATCCCCCACTTCTTCAGCTTTCAGAAGAACAACTTC
AGGTTCTTTTTCATCATTAACTGCTGGTTCTTCATCAAGACTTGTTTCCT
CAATAGATGTTTCCTCGACAACTGGGGCAGCTGGCTCCTCAACGACTGGG
GTAGTTGGCTCCTCAACGACTGGGGTAGTTGGCTCCTCAACAACTGGGGT
AGTTGGCTCCTCAACGACTGGGGTAGTTGGTTCCTCAACGACTGGGGTAG
TTGGCTCCTCAACGACTGGGGTAGTTGGCTCCTCAACGACTGGGGTAGTT
GGCTCCTCAACGACTGGGGTAGCTGGCTCCTCAACAACTGGGGTAGTTGG
TTCCTCAACAACTGGGGTAGCTGGCTCCTCAACAACTGGGGTAGCTGGCT
CCTCAACGACTGGGGTAGCTGGCTCCTCAACGACTGGGGTAGCTGGCTCC
TCAACAACCGGGGTGGCTGGCTCCTCAACAACCGGGGTGGCTGGCTCCTC
AATAACCGGGGTGGCTGGCTCCTCAATAACTGGGGTAGCTGGTTCCTCAA
CAACTGGGGTAGCTGCTTCCTCAACAACTGGGGTAGCTGGCTCCTCAACG
ACTGGGGTAGCTGGCTCCTCAACGACTGGGGTAGTTGGCTCCTCAACGAC
TGGGGTAGTTGGTTCCTCAACAACTGGGGTAGCTGGCTCCTCAACGACTG
GGGTAGTTGGTTCCTCAACAACTGGGGTAGTTGGTTCCTCAACAACTGGG
GTAGTTGGTTCCTCAACAACTGGGGTAGTTGGTTCCTCAACAACTGGGGT
AGCTGGCTCCTCAATGACTGGGGTAGCTAGCTCCTCAACGACAGGAGTAG
CTAGCTCCTCAACGACAGGAGTAGCTGGCTCCTCAATGACTGGGGTAGCT
GGCTCCTCAACAACTGGGGTGGTTGTCTCTTCGACAATTAGAGCAGCTGG
CTCCTCAACAACTGGGGCAGCCAATTCCTCAATGACTGGGGCAGCCTGTT
CCTTAACAACTGGGGCAGCCTGTTCCTCACTGACTGGGGCAGCCTCTTCT
GTAGGAGCCTTCACTACTGGAACAACTTCTTCAACAACTGGAAGAGCAGG
CTCCTCAGTAGGTTCTTCTTCTTCAAGGATGGTTGAAGGAATTGGTGCTG
CTGGAGGTGGAATAGTTGGTGGAGGTGGGAGGTCTTCGATTGTATCTTCC
TCTGTATCTGAAACCGGTTCAGTTTCAATTGGAATATCATCAAGTTCTTT
TTGAGAAGATAGAGTTTGAAGATTAACATAGTGTGGTGATTGAGGTGGTG
TATCTTCTGTGTTTTGAACTAGGCAATCATATGCAGGTGGGCGATCCTCC
ATATCAGCAGCTGGGGAAACATCAGAAGATTCTTCTCGTTCAGCCAGTAA
TTCAGGTGTGAGTGGTAATACAGGTTTCTCTTTTGGTACTTCATCAATGT
CATCTACTGGTTCGCCAGCTTCACTACTTGAAGCACTAACTAATACCACA
GTTGTGCTTTCCGCTGGTTCTGCAACAATACTGGCTTCCTTGACATCTTC
TGAGTAAGTTTCTGTTAAAACAGAGACACTCTCTTCATCACTTTCCGGTG
CAGGAGTGCTAGTTTCGACAGGAGAGTCTACTTTAGGTGCATCAGTATCA
TCTTGCTCCAGTTCTTTGAGGTCAGGATACAACGATTGAGTAGGATGAAT
GGACTAAAAATCAATTCACGAGAATCAGTTAATGAAAT Run BLAST on NCBI transcript from alignment at sc0000007:746819..751427- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001184 ID=TCONS_00001184|Name=TCONS_00001184|organism=Clytia hemisphaerica|type=transcript|length=4609bp|location=Sequence derived from alignment at sc0000007:746819..751427- (Clytia hemisphaerica)
GCGAAGATGTACAAAATTGATCATGATTTTTATATTAATTGAAAGAAATG
AGCTGAAAATACCGTATTACAAATGAGCTTCGTATGTAAAATATACGTAA
ATCCCTTTGTACCGACAGGACTAATTCTCGCGAATCACTAACTTTAAAAA
AATCAACGTAAAACAATACTCACCCTCGATAAAACCCGTTTCGGGGTCAA
GGTTAGAGTAATTGAAAAAAATTTCAAGAACTCGCATAGAGACGATATTC
TGTTCGACTCCAATAAAGCCTCTGCGTTGTTGAAAAAAAGGACCAAAAAA
AACCATCGGAAAAAGAATTAAAATGAAAACTACTAGCGAAAATCGAGGGA
ACTGAACATGAAAATACTAATAAATACATGATACTAAAAAAATAATTTAC
TGATACGGTATGTTAAAAACATCCTACCATGACAAAGTTCAAAGGATAAA
AACAAATACTAAAACATTGTTACAAATACCTCGAAAACTGATTCACGAAA
AATGGCAAATGAAAAGAAAATTCTCTGTTACAAAAATTCAGGAAAAGGAA
AACTACCGATAACTTTCTCATACATTCCAAATTCAAAAAACGGCCTGAAA
CTTTAAAGAAGTTATCAATATATACTCTGTATAAAACTAGAAATTTCTAT
TTTGCATAGTAAAGCTTTAAAAATACTTAAAAATGTTCGTTTGGATTTAT
TTAGCCTCAGTAACTTTTATGAAATATGTAGGGTTATCGTCGAACTCTTC
CGGTTCTGGCATTGGAGAAACATTCGTTGCATCTAACAAAGTGTTCTCAG
TTTTATCAGCTGCTTCATCAGACTGTCCGACTTCCTCAACTTTCATTACA
GGAAGTTCATCAGCATCCCCCACTTCTTCAGCTTTCAGAAGAACAACTTC
AGGTTCTTTTTCATCATTAACTGCTGGTTCTTCATCAAGACTTGTTTCCT
CAATAGATGTTTCCTCGACAACTGGGGCAGCTGGCTCCTCAACGACTGGG
GTAGTTGGCTCCTCAACGACTGGGGTAGTTGGCTCCTCAACAACTGGGGT
AGTTGGCTCCTCAACGACTGGGGTAGTTGGTTCCTCAACGACTGGGGTAG
TTGGCTCCTCAACGACTGGGGTAGTTGGCTCCTCAACGACTGGGGTAGTT
GGCTCCTCAACGACTGGGGTAGCTGGCTCCTCAACAACTGGGGTAGTTGG
TTCCTCAACAACTGGGGTAGCTGGCTCCTCAACAACTGGGGTAGCTGGCT
CCTCAACGACTGGGGTAGCTGGCTCCTCAACGACTGGGGTAGCTGGCTCC
TCAACAACCGGGGTGGCTGGCTCCTCAACAACCGGGGTGGCTGGCTCCTC
AATAACCGGGGTGGCTGGCTCCTCAATAACTGGGGTAGCTGGTTCCTCAA
CAACTGGGGTAGCTGCTTCCTCAACAACTGGGGTAGCTGGCTCCTCAACG
ACTGGGGTAGCTGGCTCCTCAACGACTGGGGTAGTTGGCTCCTCAACGAC
TGGGGTAGTTGGTTCCTCAACAACTGGGGTAGCTGGCTCCTCAACGACTG
GGGTAGTTGGTTCCTCAACAACTGGGGTAGTTGGTTCCTCAACAACTGGG
GTAGTTGGTTCCTCAACAACTGGGGTAGTTGGTTCCTCAACAACTGGGGT
AGCTGGCTCCTCAATGACTGGGGTAGCTAGCTCCTCAACGACAGGAGTAG
CTAGCTCCTCAACGACAGGAGTAGCTGGCTCCTCAATGACTGGGGTAGCT
GGCTCCTCAACAACTGGGGTGGTTGTCTCTTCGACAATTAGAGCAGCTGG
CTCCTCAACAACTGGGGCAGCCAATTCCTCAATGACTGGGGCAGCCTGTT
CCTTAACAACTGGGGCAGCCTGTTCCTCACTGACTGGGGCAGCCTCTTCT
GTAGGAGCCTTCACTACTGGAACAACTTCTTCAACAACTGGAAGAGCAGG
CTCCTCAGTAGGTTCTTCTTCTTCAAGGATGGTTGAAGGAATTGGTGCTG
CTGGAGGTGGAATAGTTGGTGGAGGTGGGAGGTCTTCGATTGTATCTTCC
TCTGTATCTGAAACCGGTTCAGTTTCAATTGGAATATCATCAAGTTCTTT
TTGAGAAGATAGAGTTTGAAGATTAACATAGTGTGGTGATTGAGGTGGTG
TATCTTCTGTGTTTTGAACTAGGCAATCATATGCAGGTGGGCGATCCTCC
ATATCAGCAGCTGGGGAAACATCAGAAGATTCTTCTCGTTCAGCCAGTAA
TTCAGGTGTGAGTGGTAATACAGGTTTCTCTTTTGGTACTTCATCAATGT
CATCTACTGGTTCGCCAGCTTCACTACTTGAAGCACTAACTAATACCACA
GTTGTGCTTTCCGCTGGTTCTGCAACAATACTGGCTTCCTTGACATCTTC
TGAGTAAGTTTCTGTTAAAACAGAGACACTCTCTTCATCACTTTCCGGTG
CAGGAGTGCTAGTTTCGACAGGAGAGTCTACTTTAGGTGCATCAGTATCA
TCTTGCTCCAGTTCTTTGAGGTCAGGATACAACGATTGAGTAGGATGAAT
GGACTAAAAATCAATTCACGAGAATCAGTTAATGAAATGTAACATGCAAA
GTTGTGTAGAAAGCATCTGGCAGAACAGACAGAAAATAACTGGAAGCATG
TCATGTTTTAATGAGAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCTCCTCAACGACAGGAGTAGCTAGCTCCTCAACGACAGGAGTACCTGGC
TCCTCAATGACTGGGGTAGCTGGCTCCTCAACAACTGGGGTGGTTGTCTC
TTCGACAATTAGAGCAGCTGGCTCCTCAACAACTGGGGCAGCCAATTCCT
CAATGACTGGGGCAGCCTGTTCCTTAACAACTGGGGCAGCCTGTTCCTCA
CTGACTGGGGCAGCCTCTTCTGTAGGAGCCTTTACTACTGGAACAACTTC
TTCAACAACTGGAAGAGCAGGCTCCTCAGTAGGTTCTTCTTCTTCAAGGA
TGGTTGAAGGAATTGGTGCTGCTGGAGGTGGAATAGTTGGTGGAGGTGGG
AGGTCTTCGATTGTATCTTCCTCTGTATCTGAAACCGGTTCAGTTTCAAT
TGGAATATCATCAAGTTCTTTTTGAGAAGATAGAGTTTGAAGATTAACAT
AGTGTGGTGATTGAGGTGGTGTATCTTCTGTGTTTTGAACTAGGCAATCA
TATGCAGGTGGGCGATCCTCCATATCAGCAGCTTGGGAAACATCAGAAGA
TTCTTCTCGTTCAGCCAGTAATTCAGGTGTGAGTGGTAATACAGGTTTCT
CTTTTGGTACTTCATCAATGTCATCTACTGGTTCACCAGCTTCACTACTT
GAAGCACTAACTAATACCACAGTTGTGCTTTCCGCTGGTTCTGCAACAAT
ACTGGCTTCCTTGACATCTTCTGAGTAAGTTTCTGTTAAAACAGAGACAC
TCTCTTCATCACTTTCCGGTGCAGGAGTGCTAGTTTCGACAGGAGAGTCT
ACTTTAGGTGCATCAGTATCATCTTGCTCCAGTTCTTTGAGGTCAGGATA
CAACGATTGAGTAGGATGAATGGACTAAAAATCAATTCACGAGAATCAGT
TAATGAAATGTAACATGCAAAGTTGTGTAGAAAGCATCTGGCAGAACAGA
CAGAAAATAACTGGAAGCATGTCATGTTTTAATGAGAAAAAAAATTTATA
TTCTAAATTTCTATTATTTTCCCTTTATATTGCTTTAAAAGTGCTGTCTC
GTTTTTGGTGATCGTAATATTTATAAATTAAAAATTGTTCAATTTTGACT
ATGCAACTAACCGAAACATCACTAGCTCTTGAAGATCGAGGTCTGTCTTT
GTTGAATGCACCAGACTTGTATGCCTAAAGTGTAATATAAACAAATTTTG
CATTGGTTAAAGGAAACAAGAACGATATTGATCAACAATTTGGCTTTGCG
GCAGGAAATGTGGTGTCATGGTGAGTTTCCTTAACTGGAGACATCCTGTA
GTAAAAATAAAATGTTTTCCTTGTATTTTTCTCTTTATTAAATCAATCGG
AATAAGCAAAAGAAATTGTATTAATTATAGGTAGGGTAAATACATATGAT
TCAGTTCATTAAGTACTATCAATTAAAAGTAAGGGGAGCCACTTAGTTAT
GATTTATTGCCTCTTTAAAGAAAATTACAATACACAGGATGTCGTTTCAG
TTGGCTATCACACTGAACAAACACTATTCAGGTCAAATTTCAATTTTTAT
CAGACAGCTATTACAATAAAATAAAAACAAAATACATTTGGAAGCGTCTT
GTTGTGTAATCTCAAAAGTAAAACAAGAACATGTAGATCTATAGATTAAC
ACCTTTTATAAAAGTAAAGTTACTTTTATAAAAATTTCTAAAGTTTAATC
ATAACACACAATACTACAGAATACTACAATAATAAGATAACCTATGATTT
AAAAAGATATGAAATGATATTAAGAATAATAAGNTTCGACAGGAGAGTCT
ACTTTAGGTGCATCAGTATCATCTTGCTCCAGTTCTTTGAGGTCAGGATA
CAACGATTGAGTAGGATGAATGGACTAAAAATCAATTCACGAGAATCAGT
TAATGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001184-exon-sc0000007-1575043694:748908..751427 | TCONS_00001184-exon-sc0000007-1575043694:748908..751427 | Clytia hemisphaerica | exon |
| TCONS_00001184-exon-sc0000007-1575043694:746819..746886 | TCONS_00001184-exon-sc0000007-1575043694:746819..746886 | Clytia hemisphaerica | exon |
| TCONS_00001184-exon-sc0000007-1510915933:748908..751427 | TCONS_00001184-exon-sc0000007-1510915933:748908..751427 | Clytia hemisphaerica | exon |
| TCONS_00001184-exon-sc0000007-1510915933:746819..746886 | TCONS_00001184-exon-sc0000007-1510915933:746819..746886 | Clytia hemisphaerica | exon |
| TCONS_00001184-exon-sc0000007-1491911889:748908..751427 | TCONS_00001184-exon-sc0000007-1491911889:748908..751427 | Clytia hemisphaerica | exon |
| TCONS_00001184-exon-sc0000007-1491911889:746819..746886 | TCONS_00001184-exon-sc0000007-1491911889:746819..746886 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:746819..751427 - |
Blast
The following BLAST results are available for this feature:
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