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TCONS_00001184 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001184
Unique NameTCONS_00001184
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001184 ID=TCONS_00001184|Name=TCONS_00001184|organism=Clytia hemisphaerica|type=transcript|length=2588bp
GCGAAGATGTACAAAATTGATCATGATTTTTATATTAATTGAAAGAAATG
AGCTGAAAATACCGTATTACAAATGAGCTTCGTATGTAAAATATACGTAA
ATCCCTTTGTACCGACAGGACTAATTCTCGCGAATCactaactttaaaaa
aatcaacGTAAAACAATACTCACCCTCGATAAAACCCGTTTCGGGGTCAA
GGTTAGagtaattgaaaaaaatttcaagaactCGCATAGAGACGATATTC
TGTTCGACTCCAATAAAGCCTCTGCGTTGTTGAaaaaaaggaccaaaaaa
aaccatcggaaaaagaattaaaatgaaAACTACTAGCGAAAATCGAGGGA
ACTGAACATGAAAATACTAATAAATACATGatactaaaaaaataatttac
tgATACGGTATGTTAAAAACATCCTACCATGACAAAGTTCAAAGGATAAA
AACAAATACTAAAACATTGTTACAAATACCTCGAAAACTGATTCACGAAA
AATggcaaatgaaaagaaaattctctgttacaaaaattcaggaaaaggaA
AACTACCGATAACTTTCTCATACATTCCAAATTCAAAAAACGGCCTGAAA
CTTTAAAGAAGTTATCAATATATACTCTGTATAAAACTAGAAATTTCTAT
TTTGCATAGTAAAGCtttaaaaatacttaaaaatgtTCGTTTGGATTTAT
TTAGCCTCAGTAACTTTTATGAAATATGTAGGGTTATCGTCGAACTCTTC
CGGTTCTGGCATTGGAGAAACATTCGTTGCATCTAACAAAGTGTTCTCAG
TTTTATCAGCTGCTTCATCAGACTGTCCGACTTCCTCAACTTTCATTACA
GGAAGTTCATCAGCATCCCCCACTTCTTCAGCTTTCAGAAGAACAACTTC
AGGTTCTTTTTCATCATTAACTGCTGGTTCTTCATCAAGACTTGTTTCCT
CAATAGATGTTTCCTCGACAACTGGGGCAGCTGGCTCCTCAACGACTGGG
GTAGTTGGCTCCTCAACGACTGGGGTAGTTGGCTCCTCAACAACTGGGGT
AGTTGGCTCCTCAACGACTGGGGTAGTTGGTTCCTCAACGACTGGGGTAG
TTGGCTCCTCAACGACTGGGGTAGTTGGCTCCTCAACGACTGGGGTAGTT
GGCTCCTCAACGACTGGGGTAGCTGGCTCCTCAACAACTGGGGTAGTTGG
TTCCTCAACAACTGGGGTAGCTGGCTCCTCAACAACTGGGGTAGCTGGCT
CCTCAACGACTGGGGTAGCTGGCTCCTCAACGACTGGGGTAGCTGGCTCC
TCAACAACCGGGGTGGCTGGCTCCTCAACAACCGGGGTGGCTGGCTCCTC
AATAACCGGGGTGGCTGGCTCCTCAATAACTGGGGTAGCTGGTTCCTCAA
CAACTGGGGTAGCTGCTTCCTCAACAACTGGGGTAGCTGGCTCCTCAACG
ACTGGGGTAGCTGGCTCCTCAACGACTGGGGTAGTTGGCTCCTCAACGAC
TGGGGTAGTTGGTTCCTCAACAACTGGGGTAGCTGGCTCCTCAACGACTG
GGGTAGTTGGTTCCTCAACAACTGGGGTAGTTGGTTCCTCAACAACTGGG
GTAGTTGGTTCCTCAACAACTGGGGTAGTTGGTTCCTCAACAACTGGGGT
AGCTGGCTCCTCAATGACTGGGGTAGCTAGCTCCTCAACGACAGGAGTAG
CTAGCTCCTCAACGACAGGAGTAGCTGGCTCCTCAATGACTGGGGTAGCT
GGCTCCTCAACAACTGGGGTGGTTGTCTCTTCGACAATTAGAGCAGCTGG
CTCCTCAACAACTGGGGCAGCCAATTCCTCAATGACTGGGGCAGCCTGTT
CCTTAACAACTGGGGCAGCCTGTTCCTCACTGACTGGGGCAGCCTCTTCT
GTAGGAGCCTTCACTACTGGAACAACTTCTTCAACAACTGGAAGAGCAGG
CTCCTCAGTAGGTTCTTCTTCTTCAAGGATGGTTGAAGGAATTGGTGCTG
CTGGAGGTGGAATAGTTGGTGGAGGTGGGAGGTCTTCGATTGTATCTTCC
TCTGTATCTGAAACCGGTTCAGTTTCAATTGGAATATCATCAAGTTCTTT
TTGAGAAGATAGAGTTTGAAGATTAACATAGTGTGGTGATTGAGGTGGTG
TATCTTCTGTGTTTTGAACTAGGCAATCATATGCAGGTGGGCGATCCTCC
ATATCAGCAGCTGGGGAAACATCAGAAGATTCTTCTCGTTCAGCCAGTAA
TTCAGGTGTGAGTGGTAATACAGGTTTCTCTTTTGGTACTTCATCAATGT
CATCTACTGGTTCGCCAGCTTCACTACTTGAAGCACTAACTAATACCACA
GTTGTGCTTTCCGCTGGTTCTGCAACAATACTGGCTTCCTTGACATCTTC
TGAGTAAGTTTCTGTTAAAACAGAGACACTCTCTTCATCACTTTCCGGTG
CAGGAGTGCTAGTTTCGACAGGAGAGTCTACTTTAGGTGCATCAGTATCA
TCTTGCTCCAGTTCTTTGAGGTCAGGATACAACGATTGAGTAGGATGAAT
GGACTAAAAATCAATTCACGAGAATCAGTTAATGAAAT
Run BLAST on NCBI

transcript from alignment at sc0000007:746819..751427-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001184 ID=TCONS_00001184|Name=TCONS_00001184|organism=Clytia hemisphaerica|type=transcript|length=4609bp|location=Sequence derived from alignment at sc0000007:746819..751427- (Clytia hemisphaerica)
GCGAAGATGTACAAAATTGATCATGATTTTTATATTAATTGAAAGAAATG AGCTGAAAATACCGTATTACAAATGAGCTTCGTATGTAAAATATACGTAA ATCCCTTTGTACCGACAGGACTAATTCTCGCGAATCACTAACTTTAAAAA AATCAACGTAAAACAATACTCACCCTCGATAAAACCCGTTTCGGGGTCAA GGTTAGAGTAATTGAAAAAAATTTCAAGAACTCGCATAGAGACGATATTC TGTTCGACTCCAATAAAGCCTCTGCGTTGTTGAAAAAAAGGACCAAAAAA AACCATCGGAAAAAGAATTAAAATGAAAACTACTAGCGAAAATCGAGGGA ACTGAACATGAAAATACTAATAAATACATGATACTAAAAAAATAATTTAC TGATACGGTATGTTAAAAACATCCTACCATGACAAAGTTCAAAGGATAAA AACAAATACTAAAACATTGTTACAAATACCTCGAAAACTGATTCACGAAA AATGGCAAATGAAAAGAAAATTCTCTGTTACAAAAATTCAGGAAAAGGAA AACTACCGATAACTTTCTCATACATTCCAAATTCAAAAAACGGCCTGAAA CTTTAAAGAAGTTATCAATATATACTCTGTATAAAACTAGAAATTTCTAT TTTGCATAGTAAAGCTTTAAAAATACTTAAAAATGTTCGTTTGGATTTAT TTAGCCTCAGTAACTTTTATGAAATATGTAGGGTTATCGTCGAACTCTTC CGGTTCTGGCATTGGAGAAACATTCGTTGCATCTAACAAAGTGTTCTCAG TTTTATCAGCTGCTTCATCAGACTGTCCGACTTCCTCAACTTTCATTACA GGAAGTTCATCAGCATCCCCCACTTCTTCAGCTTTCAGAAGAACAACTTC AGGTTCTTTTTCATCATTAACTGCTGGTTCTTCATCAAGACTTGTTTCCT CAATAGATGTTTCCTCGACAACTGGGGCAGCTGGCTCCTCAACGACTGGG GTAGTTGGCTCCTCAACGACTGGGGTAGTTGGCTCCTCAACAACTGGGGT AGTTGGCTCCTCAACGACTGGGGTAGTTGGTTCCTCAACGACTGGGGTAG TTGGCTCCTCAACGACTGGGGTAGTTGGCTCCTCAACGACTGGGGTAGTT GGCTCCTCAACGACTGGGGTAGCTGGCTCCTCAACAACTGGGGTAGTTGG TTCCTCAACAACTGGGGTAGCTGGCTCCTCAACAACTGGGGTAGCTGGCT CCTCAACGACTGGGGTAGCTGGCTCCTCAACGACTGGGGTAGCTGGCTCC TCAACAACCGGGGTGGCTGGCTCCTCAACAACCGGGGTGGCTGGCTCCTC AATAACCGGGGTGGCTGGCTCCTCAATAACTGGGGTAGCTGGTTCCTCAA CAACTGGGGTAGCTGCTTCCTCAACAACTGGGGTAGCTGGCTCCTCAACG ACTGGGGTAGCTGGCTCCTCAACGACTGGGGTAGTTGGCTCCTCAACGAC TGGGGTAGTTGGTTCCTCAACAACTGGGGTAGCTGGCTCCTCAACGACTG GGGTAGTTGGTTCCTCAACAACTGGGGTAGTTGGTTCCTCAACAACTGGG GTAGTTGGTTCCTCAACAACTGGGGTAGTTGGTTCCTCAACAACTGGGGT AGCTGGCTCCTCAATGACTGGGGTAGCTAGCTCCTCAACGACAGGAGTAG CTAGCTCCTCAACGACAGGAGTAGCTGGCTCCTCAATGACTGGGGTAGCT GGCTCCTCAACAACTGGGGTGGTTGTCTCTTCGACAATTAGAGCAGCTGG CTCCTCAACAACTGGGGCAGCCAATTCCTCAATGACTGGGGCAGCCTGTT CCTTAACAACTGGGGCAGCCTGTTCCTCACTGACTGGGGCAGCCTCTTCT GTAGGAGCCTTCACTACTGGAACAACTTCTTCAACAACTGGAAGAGCAGG CTCCTCAGTAGGTTCTTCTTCTTCAAGGATGGTTGAAGGAATTGGTGCTG CTGGAGGTGGAATAGTTGGTGGAGGTGGGAGGTCTTCGATTGTATCTTCC TCTGTATCTGAAACCGGTTCAGTTTCAATTGGAATATCATCAAGTTCTTT TTGAGAAGATAGAGTTTGAAGATTAACATAGTGTGGTGATTGAGGTGGTG TATCTTCTGTGTTTTGAACTAGGCAATCATATGCAGGTGGGCGATCCTCC ATATCAGCAGCTGGGGAAACATCAGAAGATTCTTCTCGTTCAGCCAGTAA TTCAGGTGTGAGTGGTAATACAGGTTTCTCTTTTGGTACTTCATCAATGT CATCTACTGGTTCGCCAGCTTCACTACTTGAAGCACTAACTAATACCACA GTTGTGCTTTCCGCTGGTTCTGCAACAATACTGGCTTCCTTGACATCTTC TGAGTAAGTTTCTGTTAAAACAGAGACACTCTCTTCATCACTTTCCGGTG CAGGAGTGCTAGTTTCGACAGGAGAGTCTACTTTAGGTGCATCAGTATCA TCTTGCTCCAGTTCTTTGAGGTCAGGATACAACGATTGAGTAGGATGAAT GGACTAAAAATCAATTCACGAGAATCAGTTAATGAAATGTAACATGCAAA GTTGTGTAGAAAGCATCTGGCAGAACAGACAGAAAATAACTGGAAGCATG TCATGTTTTAATGAGAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN GCTCCTCAACGACAGGAGTAGCTAGCTCCTCAACGACAGGAGTACCTGGC TCCTCAATGACTGGGGTAGCTGGCTCCTCAACAACTGGGGTGGTTGTCTC TTCGACAATTAGAGCAGCTGGCTCCTCAACAACTGGGGCAGCCAATTCCT CAATGACTGGGGCAGCCTGTTCCTTAACAACTGGGGCAGCCTGTTCCTCA CTGACTGGGGCAGCCTCTTCTGTAGGAGCCTTTACTACTGGAACAACTTC TTCAACAACTGGAAGAGCAGGCTCCTCAGTAGGTTCTTCTTCTTCAAGGA TGGTTGAAGGAATTGGTGCTGCTGGAGGTGGAATAGTTGGTGGAGGTGGG AGGTCTTCGATTGTATCTTCCTCTGTATCTGAAACCGGTTCAGTTTCAAT TGGAATATCATCAAGTTCTTTTTGAGAAGATAGAGTTTGAAGATTAACAT AGTGTGGTGATTGAGGTGGTGTATCTTCTGTGTTTTGAACTAGGCAATCA TATGCAGGTGGGCGATCCTCCATATCAGCAGCTTGGGAAACATCAGAAGA TTCTTCTCGTTCAGCCAGTAATTCAGGTGTGAGTGGTAATACAGGTTTCT CTTTTGGTACTTCATCAATGTCATCTACTGGTTCACCAGCTTCACTACTT GAAGCACTAACTAATACCACAGTTGTGCTTTCCGCTGGTTCTGCAACAAT ACTGGCTTCCTTGACATCTTCTGAGTAAGTTTCTGTTAAAACAGAGACAC TCTCTTCATCACTTTCCGGTGCAGGAGTGCTAGTTTCGACAGGAGAGTCT ACTTTAGGTGCATCAGTATCATCTTGCTCCAGTTCTTTGAGGTCAGGATA CAACGATTGAGTAGGATGAATGGACTAAAAATCAATTCACGAGAATCAGT TAATGAAATGTAACATGCAAAGTTGTGTAGAAAGCATCTGGCAGAACAGA CAGAAAATAACTGGAAGCATGTCATGTTTTAATGAGAAAAAAAATTTATA TTCTAAATTTCTATTATTTTCCCTTTATATTGCTTTAAAAGTGCTGTCTC GTTTTTGGTGATCGTAATATTTATAAATTAAAAATTGTTCAATTTTGACT ATGCAACTAACCGAAACATCACTAGCTCTTGAAGATCGAGGTCTGTCTTT GTTGAATGCACCAGACTTGTATGCCTAAAGTGTAATATAAACAAATTTTG CATTGGTTAAAGGAAACAAGAACGATATTGATCAACAATTTGGCTTTGCG GCAGGAAATGTGGTGTCATGGTGAGTTTCCTTAACTGGAGACATCCTGTA GTAAAAATAAAATGTTTTCCTTGTATTTTTCTCTTTATTAAATCAATCGG AATAAGCAAAAGAAATTGTATTAATTATAGGTAGGGTAAATACATATGAT TCAGTTCATTAAGTACTATCAATTAAAAGTAAGGGGAGCCACTTAGTTAT GATTTATTGCCTCTTTAAAGAAAATTACAATACACAGGATGTCGTTTCAG TTGGCTATCACACTGAACAAACACTATTCAGGTCAAATTTCAATTTTTAT CAGACAGCTATTACAATAAAATAAAAACAAAATACATTTGGAAGCGTCTT GTTGTGTAATCTCAAAAGTAAAACAAGAACATGTAGATCTATAGATTAAC ACCTTTTATAAAAGTAAAGTTACTTTTATAAAAATTTCTAAAGTTTAATC ATAACACACAATACTACAGAATACTACAATAATAAGATAACCTATGATTT AAAAAGATATGAAATGATATTAAGAATAATAAGNTTCGACAGGAGAGTCT ACTTTAGGTGCATCAGTATCATCTTGCTCCAGTTCTTTGAGGTCAGGATA CAACGATTGAGTAGGATGAATGGACTAAAAATCAATTCACGAGAATCAGT TAATGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000643XLOC_000643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001184-exon-sc0000007-1575043694:748908..751427TCONS_00001184-exon-sc0000007-1575043694:748908..751427Clytia hemisphaericaexon
TCONS_00001184-exon-sc0000007-1575043694:746819..746886TCONS_00001184-exon-sc0000007-1575043694:746819..746886Clytia hemisphaericaexon
TCONS_00001184-exon-sc0000007-1510915933:748908..751427TCONS_00001184-exon-sc0000007-1510915933:748908..751427Clytia hemisphaericaexon
TCONS_00001184-exon-sc0000007-1510915933:746819..746886TCONS_00001184-exon-sc0000007-1510915933:746819..746886Clytia hemisphaericaexon
TCONS_00001184-exon-sc0000007-1491911889:748908..751427TCONS_00001184-exon-sc0000007-1491911889:748908..751427Clytia hemisphaericaexon
TCONS_00001184-exon-sc0000007-1491911889:746819..746886TCONS_00001184-exon-sc0000007-1491911889:746819..746886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:746819..751427 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001184 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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