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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001179 ID=TCONS_00001179|Name=TCONS_00001179|organism=Clytia hemisphaerica|type=transcript|length=1386bp
GCAAGACAAAAAACATGTAATGTTGATCCATTGTCTTCGgaaaaaaaagt
aattaaaaccCCCTTAATTTATCCTTCATCATTTCATAAGAGAATTTCCC
CCGTGTTTCGTTTCGATCGTCTTTTTTGATTGACAGCTCGCGATGTCAAT
TAAGAATGATGTCATTTTGATGTGATGAGGGAATAAAGAGATTGTACGTA
TATAAAAACTGTGTTACAACAAGCTCCTCATTTTATTTACAAGGAAGCAC
AAGTACAGAGAAGACGTGGTGAAAAATAACATTTATATAACCAAGTGAAA
GTAGAGAAGGAAAATTTTTGATCAACATGTACGATCATAAGAAGTTGAGC
AATCAACTAGAAACTTTATCCAATAATAATATGAACGCAAAGAAACCCAT
TCGAATTGTGGTTCTTGGACAGTGTGGTGTTGGGAAAACAGCATTGGTTT
CGAGATGTTTACAAAATACGTTTCCACAAGACTCTTCATCGGGTAAAGAC
ATTTCACATCGATACAACATGacaatcaataaaaagaaaaccgTTTGTCT
CGATATTGTCGATTTCAACGATAAAAACGACGCACTTATCAGTTGTGCAG
ATGCTTTTATTATTTGTTACGCGATAAACGATCGAAAAAGTTTCGAAGCT
ATCGATGCTTATTTGGACAAAATTGTCGAGGCTAATATAAAAAGTCCTAA
AATTGGAATTGTTGGAAATAAAATTGACTTGTATAATGATAGAGAGGTAG
CGTCAACAGAAGGACTCGAACTAGCGAAAGAAATTAACAGTCTATTTTAT
GAAACGTCAGCTAAAGTTCCCGTTATAGATGTGCGTCAAGTGTTTTATGA
TTTATATCAATCTTTAAAGAACGCTAAACGATCCAAGAAAGGTAAAAGAG
GAAGTATTGAACTTGAATCTTCAGACGTTTTCAGTCTACTGAACTATTCC
ATTATTAATAATTCGGGCGTCATTGGGCGGTCATCAAACAGCAGTTGTTT
CTCAGCTTTACTTAGCGCCCGAAGGAAAAAGTCGCCGCCACCATTATTTG
GACGAAGCTGGTCGTCAGAAAGTGTTTAATTGTTAATTGGttgattttct
gatttaaaCGGTCATGTTTTGGCAATTGCTTAGCAGACTGACTGTCTATC
AAAATAATTACACATACATAACCTTCTAaccttgattttgttttgatttg
ttccAATTTGAGGATGGTTACctaatatatctttttttgtttttgttgat
ttttaaatttaaaaaagaaatatagaaTTTTATTAACGGTTTATAAAAGA
CATTTAATTTTTTGTGTAAATAACAGAGTTAATATTTATTTATCggtatt
ttatatatatatattcacGAAGAAATAAAAAGACAT Run BLAST on NCBI transcript from alignment at sc0000007:716277..717952- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001179 ID=TCONS_00001179|Name=TCONS_00001179|organism=Clytia hemisphaerica|type=transcript|length=1676bp|location=Sequence derived from alignment at sc0000007:716277..717952- (Clytia hemisphaerica)
GCAAGACAAAAAACATGTAATGTTGATCCATTGTCTTCGGAAAAAAAAGT
AATTAAAACCCCCTTAATTTATCCTTCATCATTTCATAAGAGAATTTCCC
CCGTGTTTCGTTTCGATCGTCTTTTTTGATTGACAGCTCGCGATGTCAAT
TAAGAATGATGTCATTTTGATGTGATGAGGGAATAAAGAGATTGTACGTA
TATAAAAACTGTGTTACAACAAGCTCCTCATTTTATTTACAAGGAAGCAC
AAGTACAGAGAAGACGTGGTGAAAAATAACATTTATATAACCAAGTGAAA
GTAGAGAAGGAAAATTTTTGATCAACATGTACGATCATAAGAAGTTGAGC
AATCAACTAGAAACTTTATCCAATAATAATATGAACGCAAAGAAACCCAT
TCGAATTGTGGTTCTTGGACAGTGTGGTGTTGGGAAAACAGGTACGTTCA
ATTCCTTACTTTTCTTCACATACTTGATTCTTTGTTTTTAAGTTCTCTAT
TAATGATTTACTTTTCATTCAGCTTCTTCGAGTTTTGTCAGATGATCTTA
TTTTTATTTTTATTTTGTTCCTGCTTTGAAAATTGCTTGATTCAAGTACT
GTATTATCTTTTGACTAGACCTTTCATGAGTGGAATTTCAATGGCAAGTC
TTTGGCCTTAGCTTTCATAAATTGGAGTACCCAGGTTTACAGACCTTTTT
TGAAATTGAATTTATTTTTCGTTCATTTTAGCATTGGTTTCGAGATGTTT
ACAAAATACGTTTCCACAAGACTCTTCATCGGGTAAAGACATTTCACATC
GATACAACATGACAATCAATAAAAAGAAAACCGTTTGTCTCGATATTGTC
GATTTCAACGATAAAAACGACGCACTTATCAGTTGTGCAGATGCTTTTAT
TATTTGTTACGCGATAAACGATCGAAAAAGTTTCGAAGCTATCGATGCTT
ATTTGGACAAAATTGTCGAGGCTAATATAAAAAGTCCTAAAATTGGAATT
GTTGGAAATAAAATTGACTTGTATAATGATAGAGAGGTAGCGTCAACAGA
AGGACTCGAACTAGCGAAAGAAATTAACAGTCTATTTTATGAAACGTCAG
CTAAAGTTCCCGTTATAGATGTGCGTCAAGTGTTTTATGATTTATATCAA
TCTTTAAAGAACGCTAAACGATCCAAGAAAGGTAAAAGAGGAAGTATTGA
ACTTGAATCTTCAGACGTTTTCAGTCTACTGAACTATTCCATTATTAATA
ATTCGGGCGTCATTGGGCGGTCATCAAACAGCAGTTGTTTCTCAGCTTTA
CTTAGCGCCCGAAGGAAAAAGTCGCCGCCACCATTATTTGGACGAAGCTG
GTCGTCAGAAAGTGTTTAATTGTTAATTGGTTGATTTTCTGATTTAAACG
GTCATGTTTTGGCAATTGCTTAGCAGACTGACTGTCTATCAAAATAATTA
CACATACATAACCTTCTAACCTTGATTTTGTTTTGATTTGTTCCAATTTG
AGGATGGTTACCTAATATATCTTTTTTTGTTTTTGTTGATTTTTAAATTT
AAAAAAGAAATATAGAATTTTATTAACGGTTTATAAAAGACATTTAATTT
TTTGTGTAAATAACAGAGTTAATATTTATTTATCGGTATTTTATATATAT
ATATTCACGAAGAAATAAAAAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001179-exon-sc0000007-1575043694:717512..717952 | TCONS_00001179-exon-sc0000007-1575043694:717512..717952 | Clytia hemisphaerica | exon |
| TCONS_00001179-exon-sc0000007-1575043694:716277..717221 | TCONS_00001179-exon-sc0000007-1575043694:716277..717221 | Clytia hemisphaerica | exon |
| TCONS_00001179-exon-sc0000007-1510915933:717512..717952 | TCONS_00001179-exon-sc0000007-1510915933:717512..717952 | Clytia hemisphaerica | exon |
| TCONS_00001179-exon-sc0000007-1510915933:716277..717221 | TCONS_00001179-exon-sc0000007-1510915933:716277..717221 | Clytia hemisphaerica | exon |
| TCONS_00001179-exon-sc0000007-1491911889:717512..717952 | TCONS_00001179-exon-sc0000007-1491911889:717512..717952 | Clytia hemisphaerica | exon |
| TCONS_00001179-exon-sc0000007-1491911889:716277..717221 | TCONS_00001179-exon-sc0000007-1491911889:716277..717221 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:716277..717952 - |
Blast
BLAST of TCONS_00001179 vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.045e-19 Identity = 57/180 (31.67%), Postives = 100/180 (55.56%), Query Frame = 3
Query: 381 MNAKKPIRIVVLGQCGVGKTALVSRCLQNTFPQDSSSGKDISHRYNMTINKKKTVCLDIVDFNDKNDAL-----ISCADAFIICYAINDRKSFEAIDAYLDKIVEANIKSPK---IGIVGNKIDLYNDREVASTEGLELAKEINSLFYETSAKVPVIDVRQVFYDLYQSLKNAKRSKKGK 896
M +++ + G+ GVGK+ALV R L F + + ++R+ TI+ + V ++I+D + D + + + F++ Y I DR SFE + L I++ IK PK + +VGNK DL + R+V++ EG +LA E+ FYE SA ++ ++FY+L + ++ +R +GK
Sbjct: 1 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDE-VVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILD-EIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR-RRMVQGK 176
The following BLAST results are available for this feature:
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