TCONS_00001175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001175
Unique NameTCONS_00001175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001175 ID=TCONS_00001175|Name=TCONS_00001175|organism=Clytia hemisphaerica|type=transcript|length=502bp
GTAATGATGAGTTCATAAGATGTCGAAAGGAAACGAGTAATCGCCATGAA
TTTCACCGGTGTGTTAGACAGCTTCATCAATGTCTCTATGAAGAACGCAA
AGAACAGCTTAGACAAAGAGCTCTCTGCATCAAACGGacgaagaagaaga
agaaggttCTGGCAAACAACCAACGTGTAGAGATGAGTTCATAGAATGCA
TGACAGAAGCACGTGGTTGGAAGGGGAAATATCGCTGTTTCAAAGAAAGA
CGGGCTTGTGGAGAAGAATGCGACAAAAAGgctagagaaattttacaaaa
atgtcgCGGAAATGGTGGAAAGCGATGCTTCGTTAAAGCCACTAAGTATC
GGTGGAGCTGTTTGAAAAGAATGTAATTATCCACAAATATGTATTTGAAA
GATATCAGAATATAGATAACTCATGTTTTAAGTAATTATGGATTGCTGAC
CATAACCCTTCTCGTGTGTTGGGAGCCCGGGGGCAATCAATTTCTGAACG
AC
Run BLAST on NCBI

transcript from alignment at sc0000007:702702..705502-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001175 ID=TCONS_00001175|Name=TCONS_00001175|organism=Clytia hemisphaerica|type=transcript|length=2801bp|location=Sequence derived from alignment at sc0000007:702702..705502- (Clytia hemisphaerica)
GTAATGATGAGTTCATAAGATGTCGAAAGGAAACGAGTAATCGCCATGAA
TTTCACCGGTGTGTTAGACAGCTTCATCAATGTCTCTATGAAGAACGCAA
AGAACAGCTTAGACAAAGAGCTCTCTGCATCAAACGGGTGGGACTTTTTG
AATTTCCAGATAATCAGACGAATACAGAATATCTATCTAGCATAAACAAA
TGCTTTCTTTCATCGACCTTTCAAAAGAAGTGAGAGTTTCCAGTGTACAT
TTATTTTTGTGGTCTGATGTTGTTTTAGCTTTTTTTCATTCATATTTTTA
GTGCTATAATGGATTCGATGGATGCAGAAAATTTGACAACATCTTCAGAT
GTGTTTATGGATATTTCAAGTGCAAGAAGACTTGTTAACTAGTATTTTGC
TATCGTCCTTTGTAGCTAATATATGGAACAAAAAGAACGAAGATGGACAT
CCTGATGCTTTCATGTTTCGTTTTTTTTTCTTGCATCTTTCTTTAAGTGA
CCTTGTGGCACTATACTATACTTTTCTTCCTCTAGTGCTAAAAGTCTTTA
CTGCTTTTCCTCATTTTTCTTCTACTCGTAAGACTAGCGTTTTAATTTCA
AGACAGAAATTCGAGACTAAGCTAACAGATTACTTGGCTCTTTTGTTAAC
AATTGCGCGGTTTCAAAATAGTTAAATTTTCAGAAACTTTATATCAAAAA
TACGAATGATTGCACTTCAACATTAGGTGAGTAAACTGAAAAAAAAATCA
AAGTACAGTATGTCATGAATTCAAAAGAAAATTTGAACTAATGATTTTCG
AAACTGACACACGCCAAAGATACAGAGTTCCGATTTTATATCTCGATAAT
CTGTATGGTAATTGAAAAATTAACTGAATATAATCTGATAAGAATTTTAC
CAATTAAAACCTTTTTTAAGGATCTTTTAGATTTTTTTATTATCTCTCCG
TCTCCATGGAAGTACGGTATTTCGGAATTCTGAAATTGTTTCGGTATCGG
AAATCCATGAATTTTTGCTTCGAAATTTCGGTATTATAAAGTTTTGATCC
CCCTTTTTCGGAATTAATACATGAAAAATCAAATTTGATGGAAAATTAGT
CAAAACGAGGAGAAATAGTATAGTATTTTTTACGGAATTTCGGAAATTTC
GGTTAAATTATTCGCAAACCCCGTACGCCCCCCCCCATGGAAGAGTTTGC
CATTTAACCTTTGGACTTTCATGATCAGTTTTTACCGATCAGGTTTTATT
AATAATTGCACCTGATTGGAAAATGAATAGAAGAATAGAATCGAAAATAT
CACCGAAATTTTTAAACTTTTTGACACTAGGTGTCGAAGCGAAAAATATC
ACCTGATTGTTAAATAGTTGAAAAGATATCTAGGCTATAAATTTGGTGGA
CTAGCACGATGTTTCAGTATTTCTTATTTTTTGAAATAATAATTCTGAAA
CAAAATTCAATATGAAGTATTTGGTAGTTCTTTGCTTTCTTTTCTGTGTA
GCCTTTACTGCTGCAATTTTCATTGGTAAGTTGATATTGTCTTTTGTGCT
TTCAATCAAGAGACAGTTTATCTTTTACAGAAACAAAATCCACTTCATAT
TATTCTCCATTTTCAGACGAAGAAGAAGAAGAAGGTTCTGGCAAACAACC
AACGGTGAGTTTCTCCCTTTACCAATTTTTTTTCATATCATTGGTTGCTA
TCAACTGGAATGTGTGCTGGAGGAAATGAGTCTAAATACGTGCATGATAT
TTTTATGGCAGACTTCTGACTCTAAAAAGACGAAAGAAATTTTTATGTTT
CCAGTATTGAAACATTGGTATTGTCGCCCTGATCCAGACCACATTACTCG
AACTTTCAGAACCACTTTTTACTTGAACTTACTCGAACTTACTCGAACTT
ACTTACTCAAACAAGTAAAGTTCGAGTAAACAAATTACTCGAACTCCTCA
CGATTTTTCAAAAACATAAGTTCGAGTAATTGGCTGAACTTCCTCGAACT
TTGGATTCTAAGTACTGTGTGTTAAAAGTTCGAGTAAAGTTCGAGAACTA
ATCGAACAAATCGAACTTTTCTTCAATCGAGCTTATCGAACTAATCGCTC
GAACTCCTTATAAATTTTTGAAACTTTCTAAAAGTTCGAATAAAGGAATT
ACTCGAACTTTACTTGTTCGAGTAAGCTCGAGTAGTTCGATTCTCGAACT
GTTCAAGTAATGGGGTCTGATCTGATCACGTTTAAATCCAGGATTTCTCC
AATTAAGCATCGACACATGAATTTCTTCCCTTTGTTTTATAGTGTAGAGA
TGAGTTCATAGAATGCATGACAGAAGCACGTGGTTGGAAGGGGAAATATC
GCTGTTTCAAAGAAAGACGGGCTTGTGGAGAAGAATGCGACAAAAAGGTA
AACCGAATAATTTTTAGGCTATAGTACTACCTGCCGTTTTGAGTAGAAGT
CTGCGATGTAGACTGAATACATTTTTGTCTAAAAATAAATTGTCTTGTAT
AGTATTCACTTTCTGACCAAATTACTCTTCAGCTTTTAATACGAATAAGA
TAATAATTAAAACTATTTTCATTTTTCAGGCTAGAGAAATTTTACAAAAA
TGTCGCGGAAATGGTGGAAAGCGATGCTTCGTTAAAGCCACTAAGTATCG
GTGGAGCTGTTTGAAAAGAATGTAATTATCCACAAATATGTATTTGAAAG
ATATCAGAATATAGATAACTCATGTTTTAAGTAATTATGGATTGCTGACC
ATAACCCTTCTCGTGTGTTGGGAGCCCGGGGGCAATCAATTTCTGAACGA
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000638XLOC_000638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001175-exon-sc0000007-1575043694:705366..705502TCONS_00001175-exon-sc0000007-1575043694:705366..705502Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1575043694:703849..703886TCONS_00001175-exon-sc0000007-1575043694:703849..703886Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1575043694:703106..703210TCONS_00001175-exon-sc0000007-1575043694:703106..703210Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1575043694:702702..702923TCONS_00001175-exon-sc0000007-1575043694:702702..702923Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1510915933:705366..705502TCONS_00001175-exon-sc0000007-1510915933:705366..705502Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1510915933:703849..703886TCONS_00001175-exon-sc0000007-1510915933:703849..703886Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1510915933:703106..703210TCONS_00001175-exon-sc0000007-1510915933:703106..703210Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1510915933:702702..702923TCONS_00001175-exon-sc0000007-1510915933:702702..702923Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1491911889:705366..705502TCONS_00001175-exon-sc0000007-1491911889:705366..705502Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1491911889:703849..703886TCONS_00001175-exon-sc0000007-1491911889:703849..703886Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1491911889:703106..703210TCONS_00001175-exon-sc0000007-1491911889:703106..703210Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1491911889:702702..702923TCONS_00001175-exon-sc0000007-1491911889:702702..702923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:702702..705502 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (57.2435 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.054456	0	0	0	0	0	0.46702	0.582957	1.12239	0	0.154131	0	6.20457	11.0468	0	0.084569	2.67288	1.80016	48.9595	44.4319	15.7185	14.2992	11.354	3.04821	53.9182	57.2435	0	0	0.671971	0.684633
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500Sequence
Match NameE-valueIdentityDescription
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