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TCONS_00001175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001175
Unique NameTCONS_00001175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001175 ID=TCONS_00001175|Name=TCONS_00001175|organism=Clytia hemisphaerica|type=transcript|length=502bp
GTAATGATGAGTTCATAAGATGTCGAAAGGAAACGAGTAATCGCCATGAA
TTTCACCGGTGTGTTAGACAGCTTCATCAATGTCTCTATGAAGAACGCAA
AGAACAGCTTAGACAAAGAGCTCTCTGCATCAAACGGacgaagaagaaga
agaaggttCTGGCAAACAACCAACGTGTAGAGATGAGTTCATAGAATGCA
TGACAGAAGCACGTGGTTGGAAGGGGAAATATCGCTGTTTCAAAGAAAGA
CGGGCTTGTGGAGAAGAATGCGACAAAAAGgctagagaaattttacaaaa
atgtcgCGGAAATGGTGGAAAGCGATGCTTCGTTAAAGCCACTAAGTATC
GGTGGAGCTGTTTGAAAAGAATGTAATTATCCACAAATATGTATTTGAAA
GATATCAGAATATAGATAACTCATGTTTTAAGTAATTATGGATTGCTGAC
CATAACCCTTCTCGTGTGTTGGGAGCCCGGGGGCAATCAATTTCTGAACG
AC
Run BLAST on NCBI

transcript from alignment at sc0000007:702702..705502-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001175 ID=TCONS_00001175|Name=TCONS_00001175|organism=Clytia hemisphaerica|type=transcript|length=2801bp|location=Sequence derived from alignment at sc0000007:702702..705502- (Clytia hemisphaerica)
GTAATGATGAGTTCATAAGATGTCGAAAGGAAACGAGTAATCGCCATGAA TTTCACCGGTGTGTTAGACAGCTTCATCAATGTCTCTATGAAGAACGCAA AGAACAGCTTAGACAAAGAGCTCTCTGCATCAAACGGGTGGGACTTTTTG AATTTCCAGATAATCAGACGAATACAGAATATCTATCTAGCATAAACAAA TGCTTTCTTTCATCGACCTTTCAAAAGAAGTGAGAGTTTCCAGTGTACAT TTATTTTTGTGGTCTGATGTTGTTTTAGCTTTTTTTCATTCATATTTTTA GTGCTATAATGGATTCGATGGATGCAGAAAATTTGACAACATCTTCAGAT GTGTTTATGGATATTTCAAGTGCAAGAAGACTTGTTAACTAGTATTTTGC TATCGTCCTTTGTAGCTAATATATGGAACAAAAAGAACGAAGATGGACAT CCTGATGCTTTCATGTTTCGTTTTTTTTTCTTGCATCTTTCTTTAAGTGA CCTTGTGGCACTATACTATACTTTTCTTCCTCTAGTGCTAAAAGTCTTTA CTGCTTTTCCTCATTTTTCTTCTACTCGTAAGACTAGCGTTTTAATTTCA AGACAGAAATTCGAGACTAAGCTAACAGATTACTTGGCTCTTTTGTTAAC AATTGCGCGGTTTCAAAATAGTTAAATTTTCAGAAACTTTATATCAAAAA TACGAATGATTGCACTTCAACATTAGGTGAGTAAACTGAAAAAAAAATCA AAGTACAGTATGTCATGAATTCAAAAGAAAATTTGAACTAATGATTTTCG AAACTGACACACGCCAAAGATACAGAGTTCCGATTTTATATCTCGATAAT CTGTATGGTAATTGAAAAATTAACTGAATATAATCTGATAAGAATTTTAC CAATTAAAACCTTTTTTAAGGATCTTTTAGATTTTTTTATTATCTCTCCG TCTCCATGGAAGTACGGTATTTCGGAATTCTGAAATTGTTTCGGTATCGG AAATCCATGAATTTTTGCTTCGAAATTTCGGTATTATAAAGTTTTGATCC CCCTTTTTCGGAATTAATACATGAAAAATCAAATTTGATGGAAAATTAGT CAAAACGAGGAGAAATAGTATAGTATTTTTTACGGAATTTCGGAAATTTC GGTTAAATTATTCGCAAACCCCGTACGCCCCCCCCCATGGAAGAGTTTGC CATTTAACCTTTGGACTTTCATGATCAGTTTTTACCGATCAGGTTTTATT AATAATTGCACCTGATTGGAAAATGAATAGAAGAATAGAATCGAAAATAT CACCGAAATTTTTAAACTTTTTGACACTAGGTGTCGAAGCGAAAAATATC ACCTGATTGTTAAATAGTTGAAAAGATATCTAGGCTATAAATTTGGTGGA CTAGCACGATGTTTCAGTATTTCTTATTTTTTGAAATAATAATTCTGAAA CAAAATTCAATATGAAGTATTTGGTAGTTCTTTGCTTTCTTTTCTGTGTA GCCTTTACTGCTGCAATTTTCATTGGTAAGTTGATATTGTCTTTTGTGCT TTCAATCAAGAGACAGTTTATCTTTTACAGAAACAAAATCCACTTCATAT TATTCTCCATTTTCAGACGAAGAAGAAGAAGAAGGTTCTGGCAAACAACC AACGGTGAGTTTCTCCCTTTACCAATTTTTTTTCATATCATTGGTTGCTA TCAACTGGAATGTGTGCTGGAGGAAATGAGTCTAAATACGTGCATGATAT TTTTATGGCAGACTTCTGACTCTAAAAAGACGAAAGAAATTTTTATGTTT CCAGTATTGAAACATTGGTATTGTCGCCCTGATCCAGACCACATTACTCG AACTTTCAGAACCACTTTTTACTTGAACTTACTCGAACTTACTCGAACTT ACTTACTCAAACAAGTAAAGTTCGAGTAAACAAATTACTCGAACTCCTCA CGATTTTTCAAAAACATAAGTTCGAGTAATTGGCTGAACTTCCTCGAACT TTGGATTCTAAGTACTGTGTGTTAAAAGTTCGAGTAAAGTTCGAGAACTA ATCGAACAAATCGAACTTTTCTTCAATCGAGCTTATCGAACTAATCGCTC GAACTCCTTATAAATTTTTGAAACTTTCTAAAAGTTCGAATAAAGGAATT ACTCGAACTTTACTTGTTCGAGTAAGCTCGAGTAGTTCGATTCTCGAACT GTTCAAGTAATGGGGTCTGATCTGATCACGTTTAAATCCAGGATTTCTCC AATTAAGCATCGACACATGAATTTCTTCCCTTTGTTTTATAGTGTAGAGA TGAGTTCATAGAATGCATGACAGAAGCACGTGGTTGGAAGGGGAAATATC GCTGTTTCAAAGAAAGACGGGCTTGTGGAGAAGAATGCGACAAAAAGGTA AACCGAATAATTTTTAGGCTATAGTACTACCTGCCGTTTTGAGTAGAAGT CTGCGATGTAGACTGAATACATTTTTGTCTAAAAATAAATTGTCTTGTAT AGTATTCACTTTCTGACCAAATTACTCTTCAGCTTTTAATACGAATAAGA TAATAATTAAAACTATTTTCATTTTTCAGGCTAGAGAAATTTTACAAAAA TGTCGCGGAAATGGTGGAAAGCGATGCTTCGTTAAAGCCACTAAGTATCG GTGGAGCTGTTTGAAAAGAATGTAATTATCCACAAATATGTATTTGAAAG ATATCAGAATATAGATAACTCATGTTTTAAGTAATTATGGATTGCTGACC ATAACCCTTCTCGTGTGTTGGGAGCCCGGGGGCAATCAATTTCTGAACGA C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000638XLOC_000638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001175-exon-sc0000007-1575043694:705366..705502TCONS_00001175-exon-sc0000007-1575043694:705366..705502Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1575043694:703849..703886TCONS_00001175-exon-sc0000007-1575043694:703849..703886Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1575043694:703106..703210TCONS_00001175-exon-sc0000007-1575043694:703106..703210Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1575043694:702702..702923TCONS_00001175-exon-sc0000007-1575043694:702702..702923Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1510915933:705366..705502TCONS_00001175-exon-sc0000007-1510915933:705366..705502Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1510915933:703849..703886TCONS_00001175-exon-sc0000007-1510915933:703849..703886Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1510915933:703106..703210TCONS_00001175-exon-sc0000007-1510915933:703106..703210Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1510915933:702702..702923TCONS_00001175-exon-sc0000007-1510915933:702702..702923Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1491911889:705366..705502TCONS_00001175-exon-sc0000007-1491911889:705366..705502Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1491911889:703849..703886TCONS_00001175-exon-sc0000007-1491911889:703849..703886Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1491911889:703106..703210TCONS_00001175-exon-sc0000007-1491911889:703106..703210Clytia hemisphaericaexon
TCONS_00001175-exon-sc0000007-1491911889:702702..702923TCONS_00001175-exon-sc0000007-1491911889:702702..702923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:702702..705502 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.054456 0 0 0 0 0 0.46702 0.582957 1.12239 0 0.154131 0 6.20457 11.0468 0 0.084569 2.67288 1.80016 48.9595 44.4319 15.7185 14.2992 11.354 3.04821 53.9182 57.2435 0 0 0.671971 0.684633
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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