TCONS_00001173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001173
Unique NameTCONS_00001173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001173 ID=TCONS_00001173|Name=TCONS_00001173|organism=Clytia hemisphaerica|type=transcript|length=561bp
AAGTCAAACAATTACATAACACGTGGACATATTATCAACCTATTAAACTA
TATAAAGCAGTGTCTTGGAATTATTCTTCTCTTTTCTCTGGTGATATCAC
AAGAAGAATTACTCGTCAAGATGAAGTGTTTGGCAATCTTCGCTCTGGTT
TGTGTGGCTTTGGCTGCCGCTGAATTTTACGATGAAGAAGGATCTGGTGA
TTTATCCTGCAAACAAGAATACAAGCAATGTCGTGAAAATGCTGATAGCT
TCGGAGACAAACGTGAATGTCGCCGTCAATACCACAGATGTCGCAGAGGA
GAAGTCAAAGACTGTTTAAAGGAGTGTCGTGAAGAATTCAAAGAATGCCG
AAGCCAAGAAGACGCCAGTATCCTCAAGTGTGGATACGAGCAATTCAAGT
GCAGAGCTAAATGTCCCTTCTCTCtttaaaatatcataaaatatataaaa
aggaaaatataaaaTGCGATCAAGATTGATTGTTtctgtatttttcattt
tatccatacTAATTCTATTccataatttccaaaagaactatttttttaaa
cttttatttcG
Run BLAST on NCBI

protein sequence of TCONS_00001173-protein

>TCONS_00001173-protein ID=TCONS_00001173-protein|Name=TCONS_00001173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
KSNNYITRGHIINLLNYIKQCLGIILLFSLVISQEELLVKMKCLAIFALV
CVALAAAEFYDEEGSGDLSCKQEYKQCRENADSFGDKRECRRQYHRCRRG
EVKDCLKECREEFKECRSQEDASILKCGYEQFKCRAKCPFSL
Run BLAST on NCBI

transcript from alignment at sc0000007:700080..701443-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001173 ID=TCONS_00001173|Name=TCONS_00001173|organism=Clytia hemisphaerica|type=transcript|length=1364bp|location=Sequence derived from alignment at sc0000007:700080..701443- (Clytia hemisphaerica)
AAGTCAAACAATTACATAACACGTGGACATATTATCAACCTATTAAACTA
TATAAAGCAGTGTCTTGGAATTATTCTTCTCTTTTCTCTGGTGATATCAC
AAGAAGAATTACTCGTCAAGATGAAGTGTTTGGCAATCTTCGCTCTGGTT
TGTGTGGCTTTGGCTGCCGCTGAATTTTACGATGAAGAAGGATCTGGTGA
TTTATCCGTAAGTTTTTCATCGTCATCAAAAGTATGGCAACTATCTAAAT
TTTACACTTGCTGTTTCCAACCAAGGGTTGAATTGAAATTCTTATTTGCC
AGCATTAAGGGATACATACATATGCAATTGTTTTGAAAAAACATCTGAAG
TTTATCTTTATGTGTAATTTCTCATTCGCAGACTTTGTTCTAATACAAAA
GCCTATTGTATGACAGCTTGGAACGTTCCTTTAATAGTGCAAACAAGAAT
ACAAGCAATGTCGTGAAAATGCTGATAGCTTCGGAGACAAACGTGAATGT
CGCCGTCAATACCACAGATGTCGCAGAGGAGAAGTCAAAGACTGTTTAAA
GGAGGTAATATATCCTTATAGGTCTTAAATCTTTGCTATATGAAAACAGA
AATACACGCTCTTTTTATAAGAATTTACTTTACAATATATGCGAAGCTCA
ACAACGTAGTGTTTTGAGCACTTTGGTGAAAACAGCAGACTATGCTCGCT
TACCTGAGCCGCACTGACGAGTCCTGGGAAGGACGAAGAGATGTAATATA
TTATATAATATTCATTTTGAGATTGGCCAAAAAAATCAAAAATATACTAA
GAATATCACCATTATGGGGGAATTTGGCAACTGAACCTAAGAATGTCATT
ATTAGAGCATTTTCAATTATAAATTACCAATTACCCCCAAATAAGGCTCA
CTGCTTTCACAAAAATACCATTTTATGCTTTAGACGTTTGTATTAAATGT
TAAATCTAGTCTGAATTAGGATTCCAGCCTAAGAATACTGTAACAATATT
TCAGGATGATTTTTCCCAATGTAGACGTAAGAATTGTTTTCTTTATTTCT
ATACGTACTATTGAATAAAAACTTTTTAAGATTAAGAATGTATTAGTAAC
TCAACTTTCTACCTTATTTTATTTTAGTGTCGTGAAGAATTCAAAGAATG
CCGAAGCCAAGAAGACGCCAGTATCCTCAAGTGTGGATACGAGCAATTCA
AGTGCAGAGCTAAATGTCCCTTCTCTCTTTAAAATATCATAAAATATATA
AAAAGGAAAATATAAAATGCGATCAAGATTGATTGTTTCTGTATTTTTCA
TTTTATCCATACTAATTCTATTCCATAATTTCCAAAAGAACTATTTTTTT
AAACTTTTATTTCG

Coding sequence (CDS) from alignment at sc0000007:700080..701443-

>TCONS_00001173 ID=TCONS_00001173|Name=TCONS_00001173|organism=Clytia hemisphaerica|type=CDS|length=1287bp|location=Sequence derived from alignment at sc0000007:700080..701443- (Clytia hemisphaerica)
TGTCGTGAAGAATTCAAAGAATGCCGAAGCCAAGAAGACGCCAGTATCCT
CAAGTGTGGATACGAGCAATTCAAGTGCAGAGCTAAATGTCCCTTCTCTC
TTTAATGCAAACAAGAATACAAGCAATGTCGTGAAAATGCTGATAGCTTC
GGAGACAAACGTGAATGTCGCCGTCAATACCACAGATGTCGCAGAGGAGA
AGTCAAAGACTGTTTAAAGGAGAAGTCAAACAATTACATAACACGTGGAC
ATATTATCAACCTATTAAACTATATAAAGCAGTGTCTTGGAATTATTCTT
CTCTTTTCTCTGGTGATATCACAAGAAGAATTACTCGTCAAGATGAAGTG
TTTGGCAATCTTCGCTCTGGTTTGTGTGGCTTTGGCTGCCGCTGAATTTT
ACGATGAAGAAGGATCTGGTGATTTATCCTGTCGTGAAGAATTCAAAGAA
TGCCGAAGCCAAGAAGACGCCAGTATCCTCAAGTGTGGATACGAGCAATT
CAAGTGCAGAGCTAAATGTCCCTTCTCTCTTTAATGCAAACAAGAATACA
AGCAATGTCGTGAAAATGCTGATAGCTTCGGAGACAAACGTGAATGTCGC
CGTCAATACCACAGATGTCGCAGAGGAGAAGTCAAAGACTGTTTAAAGGA
GAAGTCAAACAATTACATAACACGTGGACATATTATCAACCTATTAAACT
ATATAAAGCAGTGTCTTGGAATTATTCTTCTCTTTTCTCTGGTGATATCA
CAAGAAGAATTACTCGTCAAGATGAAGTGTTTGGCAATCTTCGCTCTGGT
TTGTGTGGCTTTGGCTGCCGCTGAATTTTACGATGAAGAAGGATCTGGTG
ATTTATCCTGTCGTGAAGAATTCAAAGAATGCCGAAGCCAAGAAGACGCC
AGTATCCTCAAGTGTGGATACGAGCAATTCAAGTGCAGAGCTAAATGTCC
CTTCTCTCTTTAATGCAAACAAGAATACAAGCAATGTCGTGAAAATGCTG
ATAGCTTCGGAGACAAACGTGAATGTCGCCGTCAATACCACAGATGTCGC
AGAGGAGAAGTCAAAGACTGTTTAAAGGAGAAGTCAAACAATTACATAAC
ACGTGGACATATTATCAACCTATTAAACTATATAAAGCAGTGTCTTGGAA
TTATTCTTCTCTTTTCTCTGGTGATATCACAAGAAGAATTACTCGTCAAG
ATGAAGTGTTTGGCAATCTTCGCTCTGGTTTGTGTGGCTTTGGCTGCCGC
TGAATTTTACGATGAAGAAGGATCTGGTGATTTATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000637XLOC_000637Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001173-proteinTCONS_00001173-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001173-exon-sc0000007-1575043694:701237..701443TCONS_00001173-exon-sc0000007-1575043694:701237..701443Clytia hemisphaericaexon
TCONS_00001173-exon-sc0000007-1575043694:700890..701006TCONS_00001173-exon-sc0000007-1575043694:700890..701006Clytia hemisphaericaexon
TCONS_00001173-exon-sc0000007-1575043694:700080..700316TCONS_00001173-exon-sc0000007-1575043694:700080..700316Clytia hemisphaericaexon
TCONS_00001173-exon-sc0000007-1510915933:701237..701443TCONS_00001173-exon-sc0000007-1510915933:701237..701443Clytia hemisphaericaexon
TCONS_00001173-exon-sc0000007-1510915933:700890..701006TCONS_00001173-exon-sc0000007-1510915933:700890..701006Clytia hemisphaericaexon
TCONS_00001173-exon-sc0000007-1510915933:700080..700316TCONS_00001173-exon-sc0000007-1510915933:700080..700316Clytia hemisphaericaexon
TCONS_00001173-exon-sc0000007-1491911889:701237..701443TCONS_00001173-exon-sc0000007-1491911889:701237..701443Clytia hemisphaericaexon
TCONS_00001173-exon-sc0000007-1491911889:700890..701006TCONS_00001173-exon-sc0000007-1491911889:700890..701006Clytia hemisphaericaexon
TCONS_00001173-exon-sc0000007-1491911889:700080..700316TCONS_00001173-exon-sc0000007-1491911889:700080..700316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:700080..701443 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.302367	0.294856	0	0	0	0	0	0	0	0	0.102113	0	322.02	294.741	80.6962	216.253	98.5119	99.3429	1878.18	1707.29	691.787	656.797	1252.24	1420.56	1605.88	1713.28	1.10561	0.589971	59.4019	81.2647
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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