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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001162 ID=TCONS_00001162|Name=TCONS_00001162|organism=Clytia hemisphaerica|type=transcript|length=5026bpRun BLAST on NCBI transcript from alignment at sc0000007:597726..615356- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001162 ID=TCONS_00001162|Name=TCONS_00001162|organism=Clytia hemisphaerica|type=transcript|length=17631bp|location=Sequence derived from alignment at sc0000007:597726..615356- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001162 vs. Swiss-Prot (Human)
Match: KDIS (Kinase D-interacting substrate of 220 kDa OS=Homo sapiens GN=KIDINS220 PE=1 SV=3) HSP 1 Score: 561.992 bits (1447), Expect = 3.632e-169 Identity = 320/858 (37.30%), Postives = 508/858 (59.21%), Query Frame = 3
Query: 105 IENNNLDGVIDCIEEGVNLEEADSHGQTPLIFAAEKGHLEIVAELLNRNVDANAKDQDGWTPLIAASKEGHVDVVGVLLENAAKYNIPDMGGWTPLVWAAYKGHTDVVHELLNYGANPEARGQHNMTALIWASGRGHTGVVSKLINRGAKAEVADKYGTTALIWACRKGHYEVIKMLLNAGANCNAVGTHGWTPIIMAAKGGYGDVLTLLLDESTNVNAVDHQGLSALGWAAKEGYEELVGKLIGKGAFLNIPDNRGDSPLIIASKEGHASVVRTLVNAYAEIEITDSDGKTALFHGVEKGHVAVVRELLLAGANTEVTNKEGETPLLRGAKRKHTQCVKLLLEKGANPAITDKKGDTPLHIAIRNRFAGLCEALLNDQKNSKILHQPNKAGETPYSIDLQNKPSILPGFFQGQQVN---HDFDKMDYCTQQELLLATISEYLMEPSFSTPLTLGMYSRWGTGKSTQLKRLVELLEEAKSSVPIIPFRVTAPVVFMCILAAVILSVVFWIATDSWEVGVASAXXXXXXXXXXXXXARVTLISHSRGLRSAGEA------MTNFIYRCVWF----LKLIYCIPPSI-QEVKPALPVHLMTVDLTRSVLVGDNPMTSLVNFIRELNDSIEQNIGIVIPRLYRIFQSGPYRTPSGGKSIFRTKWKKSCCCVPSFLISIVVFACLLVGLILYGAWKLNGPSAAI-AIQIACLCVLGGFLLANLLRFFIIIYCLVLPMKKRV-NFVSTQAGIQEETFLSVVKQELDLCVDMLECLDGFAQRQTRIIVHIDLLESLEQQKVLGLIDSLKFMISAPGHPFIFVLSVDPRLLIKAMDQSLTIV--HGPVNAYDYLRNLVDLPFYIS 2624
+E N+ + +E+ +++E + GQTPL+ AAE+G+LEIV EL+ + N +D D WT LI+ASKEGHV +V LL+ DMGGWT L+WA YKG TDVV LL++GANP G +++ +IWA+GRGH +V L+ GAK +DKYGTT L+WA RKGH E +K LL GA+ + G + T +I+A KGGY + +L + NVN D G +AL A+KEG+ E+V L+ G ++NIPD GD+ LI A + GH +VR L+ YA+I+I D KTAL+ VEKG+ +VR++L +TE+ K+GETPL++ K ++ + V+LLL+KGA + DKKGDTPLHIAIR R L E LL + K+ ++L++PNKAGETPY+ID ++ SIL F + ++ D D + Y +L + +++ L EP+ P+ +G+Y++WG+GKS LK+L + ++ F+ + +VF+ +L L ++F +G+A ++ + + + I G R GE+ ++ + R + + LKL++ PP + ++ ALPV + D R VG TSL I L+D+ E+ G + RL+R+F++ + GK KWKK+ CC+PSF+I + + C++ G+ L ++++ + A+ I+ V+G + N ++ ++ L+ +KR+ N S ++ E F+ V+K E++L M + +D F Q QTR++V ID L++ EQ KVL ++D+++ + S PFI + + DP ++IKA++Q+L V +N +DY+RN+V LP +++
Sbjct: 13 VEEENIPALKALLEKCKDVDERNECGQTPLMIAAEQGNLEIVKELIKNGANCNLEDLDNWTALISASKEGHVHIVEELLKCGVNLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSVTGLYSVYPIIWAAGRGHADIVHLLLQNGAKVNCSDKYGTTPLVWAARKGHLECVKHLLAMGADVDQEGANSMTALIVAVKGGYTQSVKEILKRNPNVNLTDKDGNTALMIASKEGHTEIVQDLLDAGTYVNIPDRSGDTVLIGAVRGGHVEIVRALLQKYADIDIRGQDNKTALYWAVEKGNATMVRDILQCNPDTEICTKDGETPLIKATKMRNIEVVELLLDKGAKVSAVDKKGDTPLHIAIRGRSRKLAELLLRNPKDGRLLYRPNKAGETPYNIDCSHQKSILTQIFGARHLSPTETDGDMLGY----DLYSSALADILSEPTMQPPICVGLYAQWGSGKSFLLKKLEDEMKTFAGQQIEPLFQFSWLIVFLTLLLCGGLGLLFAFTVHP-NLGIAVSLSFLALLY-------IFFIVIYFGGRREGESWNWAWVLSTRLARHIGYLELLLKLMFVNPPELPEQTTKALPVRFLFTDYNRLSSVGGE--TSLAEMIATLSDACEREFGFLATRLFRVFKT----EDTQGKK----KWKKT-CCLPSFVIFLFIIGCIISGITLLAIFRVDPKHLTVNAVLISIASVVGLAFVLNCRTWWQVLDSLLNSQRKRLHNAASKLHKLKSEGFMKVLKCEVELMARMAKTIDSFTQNQTRLVVIIDGLDACEQDKVLQMLDTVRVLFSK--GPFIAIFASDPHIIIKAINQNLNSVLRDSNINGHDYMRNIVHLPVFLN 845 HSP 2 Score: 94.3597 bits (233), Expect = 5.487e-19 Identity = 44/138 (31.88%), Postives = 82/138 (59.42%), Query Frame = 3
Query: 2979 IKRVMNVISLKARILKSSDIHFQLPRLGIWVNMCDVWPHKASWFILLCMDVSLALPDKMSIRRLYNLLGYAMPMVGDHE---ENTGNAANYFDTFLASHKPVINVADVRMFTPFLFYLDPTIRSLMIDYMVALKSGTI 3383
++R++N++S+ R+L+++ I F RL W+N+ + WP++ SW IL ++ + +PD+M+++ +Y + +P D E E G+ N F+ FL+S PV+ DV++F P LDP +R ++ D A + +I
Sbjct: 939 MRRLLNIVSVTGRLLRANQISFNWDRLASWINLTEQWPYRTSWLILY-LEETEGIPDQMTLKTIYERISKNIPTTKDVEPLLEIDGDIRN-FEVFLSSRTPVLVARDVKVFLPCTVNLDPKLREIIADVRAAREQISI 1074 The following BLAST results are available for this feature:
BLAST of TCONS_00001162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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