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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001155 ID=TCONS_00001155|Name=TCONS_00001155|organism=Clytia hemisphaerica|type=transcript|length=1901bp
CTTCTATTCAAATCTTCATGGATTGAATCATGATTTGAATATTTCGATGA
TTGCTgatagaaatgaaaaaaaagtagcCCATAAAGCCATCATGGATAGA
ATTGCTTTGCAAAGGAGATTTTTGTATTTGAAAAGAATCTTCAAAGTACG
CCATATGGATTTTGAGTTTGCAATCTGGCAAATGATATATTTATTTGTAT
CTCCAAAGaaagtttttcgaaatttttcttaTCATCAAGAAACGAAGAGG
CAATGGGCAAGAGATGATCCAGCTTTCTTGGTATTATTTAGTGGCTGGCT
ATTCTTTGCATCCATAATATTTTCAGTAGCGTTAAAACTGACCTTTTTGG
AATTTGCGAAGCTCTTATTTTGGGTTATATTCATTGATTGCATTGGCTTT
GGTCTGCTTGTTGCTGGTATCTTATCATTCATTGTTAATAAATATTTGAG
ATTTCCTGGAGGTGAGcgtcaaaaagaagaagtgGAATTCGGTTACGCAT
TTGATGTCCATCTAAATGCTTTCTTCCcacttttgattattttacatatC
ATCCAGTTGCTGTACACACCACTTGCCCACGTGTCTCCTTTCCTTGGCAG
ATTTTTTGGTAATTCTTTATGGCTGATTGCTTTCATTTATTATTTCTACA
TAACATTTCTTGGTTACAGTGCATTGCCGTTCTTAAAAGGCACTGTCATC
ATCCTCTGGCCTTTAATTGgagtatttattttttatttgatttcatTGTT
TCATCCTTCATTGACATTAAGTGCAATGATCATCAATTTTTACCACCACA
GAGTTGCTGGTTGATATGTGCTGTTATTTCAATACAACAGTGTCACTTGT
ATTATGTTTATAtacatctttttttttggtagcAAAGTAACATTTTTAGC
AAAACAAGTAACTAAAAATCTTCTCTCTTTTATAGCAAAACAAGTAACTA
AAAGTTTTCTCTATTTAATTATCAGTTCTTGCCCCTTTTGAAATTGATCT
TTTAGCGATCACATCATTTCAAAACGTTTAGACAGTTTTTTTCTATCAAG
ATTTGTCTTTGCGAATGTGAGAGTATAACTTTGTTACTTTTAGTTTacat
tttgttgttttattaGGAGGATAAAGCCTGGATAAGCCTGTTTATTTATT
GTGCTTGTTTTGTATTCTTATGGTTTTTTATTATTAATTAATCTGAATTA
ATCTTTAATATTATATGTAGTAACTACCTTATTCTGGGTGTACAGTTGAT
ATGAATCTAAGACGTTATTACTCTATACTGATGCAAAGTCTATCAAAGAT
TCTTATTAACTTTAAAAGCCTCTAgaattaaaaaatctaaagcttTCTTG
AAGTCTTGAAATAATAATGTCTATTTTAATGTTTAGTGTATTCTTGCTTG
TTGATGTACACTTTTATCAATATTCTTTAAGGGCTCtaaccatagtgaat
ttttcatatttggcACGTACGAAATACAAATATCTGCCTGATGTAGCCCA
CAAAGCTTTGGCacacattttctgttaggccaactatcctCAAATCAGCT
TCtttgtttcaaaatcttgaaaatagtgaatcaaatttttcatcccaaat
tttcattgaaaaaaagtcacaaCTTTTAATACCCATTTTAGAAaactttt
tccgaaaaatttcatatagttcaattctttgcagacaattaaaaaaattc
taaataaaaaaaattaattccccATTGAAACTTAGCACTTTTAATAAAAG
AGGGGAAGATAACATTTAATCGATGTCTTTTAATcattcataacgtcatt
tttgttatTAAATTCTTATTTACTCTTTACAACAGATTTGATTAATTAAC
AATTTATAGGGacagttttttgttaaaagtgtcaaggaaACTAAATTAGA
A Run BLAST on NCBI protein sequence of TCONS_00001155-protein >TCONS_00001155-protein ID=TCONS_00001155-protein|Name=TCONS_00001155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
FYSNLHGLNHDLNISMIADRNEKKVAHKAIMDRIALQRRFLYLKRIFKVR
HMDFEFAIWQMIYLFVSPKKVFRNFSYHQETKRQWARDDPAFLVLFSGWL
FFASIIFSVALKLTFLEFAKLLFWVIFIDCIGFGLLVAGILSFIVNKYLR
FPGGERQKEEVEFGYAFDVHLNAFFPLLIILHIIQLLYTPLAHVSPFLGR
FFGNSLWLIAFIYYFYITFLGYSALPFLKGTVIILWPLIGVFIFYLISLF
HPSLTLSAMIINFYHHRVAG Run BLAST on NCBI transcript from alignment at sc0000007:531148..534362- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001155 ID=TCONS_00001155|Name=TCONS_00001155|organism=Clytia hemisphaerica|type=transcript|length=3215bp|location=Sequence derived from alignment at sc0000007:531148..534362- (Clytia hemisphaerica)
CTTCTATTCAAATCTTCATGGATTGAATCATGGTTAGTATACATAGTTAA
ATTTGCTCCTGTAACCATTGTATTAAACCTTTATCATCAATTACAATAGT
AAAATTTTAGGTGTACACTGATTTAAAAAGATATAAAGTGAAATCATTTA
AATAAAAAATATTTAAGAATCATACAAACATTGTAAATTTTCAATGTGAC
TTTGTAAGCCACTAAATTGTACTTACAATAAAAATTTTGTAATTTTTTAC
ACCTACTGGTGTTATACTTTAATGATTGAATGCCAAAAACTTAAAAAATG
TGAGACATAGAATTTCACCTATTCACCTATATTTCCCTTGTGTAAGCCAC
ATTTTTGCCCACTTAACAAACTGTAAGCCACAAATCAGTGCAGCTAATGA
AAAATTTAGCCTTTTTTTGCTGGCAATGCTGAAAAGAAAGTATATTTCTA
ACTGTTTCCATTTTTGAGAACTCAGCCTTCAAAATTTCTTGTTAGGGTAA
GCCACATGACCAGTAAGCCACATTTTTTACCCACACTTCATTTGCTTTAA
CTCCCCTTTAAGTAAGCCACAAAAATTCGCCCTTTATGCAATGGGTAGCT
AATTTGCTCTGCTTAACCATCAAAGCGATCCTAAGTGTAAGCCACATAAT
TTTCACAAGTTATGGTCAATTTAGTGGCTGACAGTAAAAATGTCACAAAA
CAAGGGGTTTATTTTTGATTGGGTTCGAATTTCTTATTAAACAATTGCAT
GGCAATTTTTTGATTGGGTAAAATAAAAAAATTGATATCCATTGATTCGT
TGACAAAATTTTTGGTGCTTTCACAAGTGTTTGCGATTGAACAAAATAAA
ACAAAATAAATATTTCCCAGAGAGGGGGTGAATTTTTAGTTTTTCTTCTA
TTTCTTTGCCAATCCGGGGAGTCTTCTTTTCACATAAATTCCCATTTCTT
GACAGAATCTTTGATTGGTTTGATTTAAAATATATATTTAGAAAAATTCA
AAAAATAGAATAAACTGTATAATTTAAAAAAAATATTAGTCTCTTTTTAT
GTTTCTTTTTTATTTTATTTAGTATTTTCAACACTTGCTCTCCTTGAGGT
CAGATCTCTGATCTTCACAATTATATAATTGTTTTAATGCTTGAGTTTTA
ATTTTTCAACATGACATTATGCCTAATATGCTTACATAACCATGATCTTG
ACCATCTTCGTTTCCTAAATATTCAAAAATATTTTGATCATTGATTACAC
AATTCTAGTTTTTGTCTCTAATGGTAATAATGATACTACAAATATAACAC
ATGTATTTTTTAGACCAATAAATTAGTCTTTTGTATTTACTTTTAGATTT
GAATATTTCGATGATTGCTGATAGAAATGAAAAAAAAGTAGCCCATAAAG
CCATCATGGATAGAATTGCTTTGCAAAGGAGATTTTTGTATTTGAAAAGA
ATCTTCAAAGTACGCCATATGGATTTTGAGTTTGCAATCTGGCAAATGAT
ATATTTATTTGTATCTCCAAAGAAAGTTTTTCGAAATTTTTCTTATCATC
AAGAAACGAAGAGGCAATGGGCAAGAGATGATCCAGCTTTCTTGGTATTA
TTTAGTGGCTGGCTATTCTTTGCATCCATAATATTTTCAGTAGCGTTAAA
ACTGACCTTTTTGGAATTTGCGAAGCTCTTATTTTGGGTTATATTCATTG
ATTGCATTGGCTTTGGTCTGCTTGTTGCTGGTATCTTATCATTCATTGTT
AATAAATATTTGAGATTTCCTGGAGGTGAGCGTCAAAAAGAAGAAGTGGA
ATTCGGTTACGCATTTGATGTCCATCTAAATGCTTTCTTCCCACTTTTGA
TTATTTTACATATCATCCAGTTGCTGTACACACCACTTGCCCACGTGTCT
CCTTTCCTTGGCAGATTTTTTGGTAATTCTTTATGGCTGATTGCTTTCAT
TTATTATTTCTACATAACATTTCTTGGTTACAGTGCATTGCCGTTCTTAA
AAGGCACTGTCATCATCCTCTGGCCTTTAATTGGAGTATTTATTTTTTAT
TTGATTTCATTGTTTCATCCTTCATTGACATTAAGTGCAATGATCATCAA
TTTTTACCACCACAGAGTTGCTGGTTGATATGTGCTGTTATTTCAATACA
ACAGTGTCACTTGTATTATGTTTATATACATCTTTTTTTTTGGTAGCAAA
GTAACATTTTTAGCAAAACAAGTAACTAAAAATCTTCTCTCTTTTATAGC
AAAACAAGTAACTAAAAGTTTTCTCTATTTAATTATCAGTTCTTGCCCCT
TTTGAAATTGATCTTTTAGCGATCACATCATTTCAAAACGTTTAGACAGT
TTTTTTCTATCAAGATTTGTCTTTGCGAATGTGAGAGTATAACTTTGTTA
CTTTTAGTTTACATTTTGTTGTTTTATTAGGAGGATAAAGCCTGGATAAG
CCTGTTTATTTATTGTGCTTGTTTTGTATTCTTATGGTTTTTTATTATTA
ATTAATCTGAATTAATCTTTAATATTATATGTAGTAACTACCTTATTCTG
GGTGTACAGTTGATATGAATCTAAGACGTTATTACTCTATACTGATGCAA
AGTCTATCAAAGATTCTTATTAACTTTAAAAGCCTCTAGAATTAAAAAAT
CTAAAGCTTTCTTGAAGTCTTGAAATAATAATGTCTATTTTAATGTTTAG
TGTATTCTTGCTTGTTGATGTACACTTTTATCAATATTCTTTAAGGGCTC
TAACCATAGTGAATTTTTCATATTTGGCACGTACGAAATACAAATATCTG
CCTGATGTAGCCCACAAAGCTTTGGCACACATTTTCTGTTAGGCCAACTA
TCCTCAAATCAGCTTCTTTGTTTCAAAATCTTGAAAATAGTGAATCAAAT
TTTTCATCCCAAATTTTCATTGAAAAAAAGTCACAACTTTTAATACCCAT
TTTAGAAAACTTTTTCCGAAAAATTTCATATAGTTCAATTCTTTGCAGAC
AATTAAAAAAATTCTAAATAAAAAAAATTAATTCCCCATTGAAACTTAGC
ACTTTTAATAAAAGAGGGGAAGATAACATTTAATCGATGTCTTTTAATCA
TTCATAACGTCATTTTTGTTATTAAATTCTTATTTACTCTTTACAACAGA
TTTGATTAATTAACAATTTATAGGGACAGTTTTTTGTTAAAAGTGTCAAG
GAAACTAAATTAGAA Coding sequence (CDS) from alignment at sc0000007:531148..534362- >TCONS_00001155 ID=TCONS_00001155|Name=TCONS_00001155|organism=Clytia hemisphaerica|type=CDS|length=1626bp|location=Sequence derived from alignment at sc0000007:531148..534362- (Clytia hemisphaerica)
ATTTGAATATTTCGATGATTGCTGATAGAAATGAAAAAAAAGTAGCCCAT
AAAGCCATCATGGATAGAATTGCTTTGCAAAGGAGATTTTTGTATTTGAA
AAGAATCTTCAAAGTACGCCATATGGATTTTGAGTTTGCAATCTGGCAAA
TGATATATTTATTTGTATCTCCAAAGAAAGTTTTTCGAAATTTTTCTTAT
CATCAAGAAACGAAGAGGCAATGGGCAAGAGATGATCCAGCTTTCTTGGT
ATTATTTAGTGGCTGGCTATTCTTTGCATCCATAATATTTTCAGTAGCGT
TAAAACTGACCTTTTTGGAATTTGCGAAGCTCTTATTTTGGGTTATATTC
ATTGATTGCATTGGCTTTGGTCTGCTTGTTGCTGGTATCTTATCATTCAT
TGTTAATAAATATTTGAGATTTCCTGGAGGTGAGCGTCAAAAAGAAGAAG
TGGAATTCGGTTACGCATTTGATGTCCATCTAAATGCTTTCTTCCCACTT
TTGATTATTTTACATATCATCCAGTTGCTGTACACACCACTTGCCCACGT
GTCTCCTTTCCTTGGCAGATTTTTTGGTAATTCTTTATGGCTGATTGCTT
TCATTTATTATTTCTACATAACATTTCTTGGTTACAGTGCATTGCCGTTC
TTAAAAGGCACTGTCATCATCCTCTGGCCTTTAATTGGAGTATTTATTTT
TTATTTGATTTCATTGTTTCATCCTTCATTGACATTAAGTGCAATGATCA
TCAATTTTTACCACCACAGAGTTGCTGGTTGATTCTATTCAAATCTTCAT
GGATTGAATCATGATTTGAATATTTCGATGATTGCTGATAGAAATGAAAA
AAAAGTAGCCCATAAAGCCATCATGGATAGAATTGCTTTGCAAAGGAGAT
TTTTGTATTTGAAAAGAATCTTCAAAGTACGCCATATGGATTTTGAGTTT
GCAATCTGGCAAATGATATATTTATTTGTATCTCCAAAGAAAGTTTTTCG
AAATTTTTCTTATCATCAAGAAACGAAGAGGCAATGGGCAAGAGATGATC
CAGCTTTCTTGGTATTATTTAGTGGCTGGCTATTCTTTGCATCCATAATA
TTTTCAGTAGCGTTAAAACTGACCTTTTTGGAATTTGCGAAGCTCTTATT
TTGGGTTATATTCATTGATTGCATTGGCTTTGGTCTGCTTGTTGCTGGTA
TCTTATCATTCATTGTTAATAAATATTTGAGATTTCCTGGAGGTGAGCGT
CAAAAAGAAGAAGTGGAATTCGGTTACGCATTTGATGTCCATCTAAATGC
TTTCTTCCCACTTTTGATTATTTTACATATCATCCAGTTGCTGTACACAC
CACTTGCCCACGTGTCTCCTTTCCTTGGCAGATTTTTTGGTAATTCTTTA
TGGCTGATTGCTTTCATTTATTATTTCTACATAACATTTCTTGGTTACAG
TGCATTGCCGTTCTTAAAAGGCACTGTCATCATCCTCTGGCCTTTAATTG
GAGTATTTATTTTTTATTTGATTTCATTGTTTCATCCTTCATTGACATTA
AGTGCAATGATCATCAATTTTTACCACCACAGAGTTGCTGGTTGATTCTA
TTCAAATCTTCATGGATTGAATCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001155-exon-sc0000007-1575043694:534331..534362 | TCONS_00001155-exon-sc0000007-1575043694:534331..534362 | Clytia hemisphaerica | exon |
| TCONS_00001155-exon-sc0000007-1575043694:531148..533016 | TCONS_00001155-exon-sc0000007-1575043694:531148..533016 | Clytia hemisphaerica | exon |
| TCONS_00001155-exon-sc0000007-1510915933:534331..534362 | TCONS_00001155-exon-sc0000007-1510915933:534331..534362 | Clytia hemisphaerica | exon |
| TCONS_00001155-exon-sc0000007-1510915933:531148..533016 | TCONS_00001155-exon-sc0000007-1510915933:531148..533016 | Clytia hemisphaerica | exon |
| TCONS_00001155-exon-sc0000007-1491911889:534331..534362 | TCONS_00001155-exon-sc0000007-1491911889:534331..534362 | Clytia hemisphaerica | exon |
| TCONS_00001155-exon-sc0000007-1491911889:531148..533016 | TCONS_00001155-exon-sc0000007-1491911889:531148..533016 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:531148..534362 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007881 | UNC-50 |
Blast
BLAST of TCONS_00001155 vs. Swiss-Prot (Human)
Match: UNC50 (Protein unc-50 homolog OS=Homo sapiens GN=UNC50 PE=1 SV=2) HSP 1 Score: 224.172 bits (570), Expect = 1.826e-67 Identity = 128/239 (53.56%), Postives = 167/239 (69.87%), Query Frame = 2
Query: 104 ALQRRFLYLKRIFKVRHMDFEFAIWQMIYLFVSPKKVFRNFSYHQETKRQWARDDPAFLVLFSGWLFFASIIFSVALKLTFLEFAKLLFWVIFIDCIGFGLLVAGILSFIVNKYLRFPGGERQKE--EVEFGYAFDVHLNAFFPXXXXXXXXXXXYTPLAHV---SPFLGRFFGNSLWLIAFIYYFYITFLGYSALPFLKGTVIILWPLIGVFIFYLISLFHPSLTLSAMIINFYHHRV 805
A +R+ YL+R+F+ R MDFEFA WQM+YLF SP++V+RNF Y ++TK QWARDDPAFLVL S WL ++I F L + F E KLL WV+ IDC+G GLL+A ++ FI NKYL +RQ +VE+GYAFDVHLNAF+PLL+ILH IQL + + HV F+G GN+LWL+A YY Y+TFLGYSALPFLK TVI+L+P + + Y +SL + + +FY +RV
Sbjct: 27 AGAKRYKYLRRLFRFRQMDFEFAAWQMLYLFTSPQRVYRNFHYRKQTKDQWARDDPAFLVLLSIWLCVSTIGFGFVLDMGFFETIKLLLWVVLIDCVGVGLLIATLMWFISNKYLV----KRQSRDYDVEWGYAFDVHLNAFYPLLVILHFIQLFF--INHVILTDTFIGYLVGNTLWLVAVGYYIYVTFLGYSALPFLKNTVILLYPFAPLILLYGLSL-ALGWNFTHTLCSFYKYRV 258
The following BLAST results are available for this feature:
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