|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001154 ID=TCONS_00001154|Name=TCONS_00001154|organism=Clytia hemisphaerica|type=transcript|length=6564bpRun BLAST on NCBI transcript from alignment at sc0000007:513015..530706- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001154 ID=TCONS_00001154|Name=TCONS_00001154|organism=Clytia hemisphaerica|type=transcript|length=17692bp|location=Sequence derived from alignment at sc0000007:513015..530706- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001154 vs. Swiss-Prot (Human)
Match: LRRK1 (Leucine-rich repeat serine/threonine-protein kinase 1 OS=Homo sapiens GN=LRRK1 PE=1 SV=3) HSP 1 Score: 654.055 bits (1686), Expect = 0.000e+0 Identity = 529/1817 (29.11%), Postives = 839/1817 (46.18%), Query Frame = 1
Query: 361 GHLEALKILAPKKFPLHVDDMPLKDSPIFYCCRYGHTELLSYIIEEIPGILSHKSFGGLGECPKTRYIQEWSELTRIIKKEEEVVIGTMLLFIACLLEHRDMVEFLI-KKGVGVNT-SLSKNQFYDYLS-PLSVACKTNNMEIIEFLWKNKAEITESIAIQNPEITGTLLERH---TQPYTRTYSVKTVIKDKTPPIEFKSFYWDNLNLHKIHFSWLEAYGNKVARVDIHSNKLSSLPINFFELLPNLEDLDISCNTITKLP----DDGVHDLRLTRIIACSNEITAIPLAFFLNPHISFMDFSKNKLLTLPSFSKDQSGTVSPNECFW-DCQNLKVLKLSRNLLTDLPKA-IHGAKGLEKLSLDENQFTSFETVWSCPLVELDISKNQLAQFSGMTKLVWSKXXXXXXXXXXXXXXXXXXXXHLQNLQYLDLSHNRISTLPPASNWKCSMLMKFDLSHNKFTGKSAYDGMAEKPFV---------------STCEFPAELFQHTLENLNLSDNDLQVFPDTICELTALQDLNLSRNHNLHTIPSTLGKLKNIWTLKLAELTIPELASFNLDDKNVAKDILPFLRAKLRKSESFNRMKLMIVGLQGRGKTTLLSVIQGKNLPENI---STVGITVEQFTLPLKSKLPGFLVSNQKPGIKFSAWDSAGQQVYYATHQCFLTSQTLYLVVFNVTHGRQGIIDLEPWLANIQARAKNSRCIIVGTHTDCMPSENKKQTLAGYEKEI-----HTRYYKKKGFPDIEGYLF--ISSVSGEGVEGMRQMIYNVAESMNS-----GSNTLTGAPNRKMAPRSYINLYDEILKEKDRRAKNFIPPILTTDEMLQLADQNPEDNDIFTVEELVLATRFLHENGIVLHFDDHLHELNNIFFIDPSWLVDMFALVVTIPECNRYAQSGYIERKMLIQILSENPRLPENFLPQYLRLLERFEIALCLDVQTQFLIPAMLPSDRPELTEQLERYIEIELANDSKHYCLNRTYHMSYIPAGFWSRLIARLMIAVQKWGMQISDEPTSETENYEHKV-------------------------WREGVMVTYDDGFYLVESFHDETQYPAWSNKGVSITVWSLEQDFSVMGFIVDHLDMLITEWYPGLEDVDNNGDCLVQKLITCPMCRKNRQDVLQNEIIGFRPINRYDTEYSHYFRDVQHVNQFYLLTCASAAISYKAILCEKHPQQYVDLSLVVPDLMLTDLPPYFVIDPGRFMFAPSEETRLXXXXXXXXXXXXXXECQ-VAVKQFHSTTKAKQFDTSMAEERDETDGISNVFKPTPQSTQ-EQLEDTKIIQAFWELRQEVSMLCRLQHANIIQFIGVCHSPLCFVIELAPQGSLQGILEKKQQQRDEHSDGLVSDSHMYGSILGRFISYKIAFQVIDALYYLHDSEIVYRDLKSDNVLVWSLDPNDVINIKLSDYGIATFSTPQGVIGEGGTHGFQAPEVRFSSPYDEKVDIFSFGIWLYELLSGYRPFRTFRTGSEMKKAILRGVRPNLRQDFINSDLPF--LECIMEDCWQQNPNSRPSSQELAMCLKQPDVCMLQNIYPPSDVLTLQKVRVAIPWTRSEKSAKEEEILIWSEYGADRRYQLIDIRNDKPSXXXXXREKILAGPRILCACQVENHVWLGNEGCQIEVFG-----QLSNQQR----PSILWKFSLAKLKYALDMKTYQHDGILKVFASLVDGHLCIFTKDLHSTSNSRPIFDETEEDIVQF------EKDKWDVQDLNLGTRGYPAKCMSLTRNNTELWVGSGSLIVIVDPHSNTIKEHIETTIRTNRLISLMTSDE 5553
G LE ++ L K+ + + P D+P +GHT ++ ++E +PG C R + W +L +AC H +V+ L+ G + ++ KN+F + PL A K+ N +I FL ++ A I + +P+ + LL ++ P +Y KT ++ K W +L L + WL ++ +D+ +N L++LP L NL L++S N + +LP D + RL I SN+++ +P F + + SKN L L F ++ N W + L+ L +S N LT+LP +H K L L++ N F W+CPL S+N L + W L ++ S N+L+ + + L L +L L N+++ LPP W C L DLS N+ GK+ DG+ K S EFPA +LE L L+DN L P ++C L +L +L L N L +P LG+L N+W L +LTI + + K K +L +LRA+LRK+E MK++IVG +GK+TLL ++Q P+ + +T+ T + P S+ + ++F+ WD G +QCF T + LY+VV+N+ G + + +L+ WL NI+A+A N+ ++VGTH D + ++ + + +A + + GFPDI IS S EG EG+RQ+I++V SM G L G ++ PRSY++L + +L E+ RR+++ LT ++ QL +Q P DNDI E+L A FL E G +LHF D H L N++F+DP WL + + I A++G I R +++L + QY + L +FEIAL + +L+P +LPS +P L R+ AN + R + MS++P GFW R IAR++I++ + +Q+ E T++ KV W+EG++VT+D G+ VES + + + G+ I S +DFS M FI DH++ LI +W+P L +++G L+++ + CP+C T+ S DVQ+ F + C AI I C +HP V L +VP+L +TD P ++ + + E + LG GG+G V + Q VAVK+FH K+F F P T L T ++ F E RQE SML LQH I+ IG+ PLCF +ELAP SL +L + + DS LG ++ KIA+Q+ L YLH I++ DLKSDN+LVWSLD + INIKLSDYGI+ S +G +G GT G+QAPE+R YDEKVD+FS+G+ LYELLSG RP ++ K + +G+RP L Q ++ F L+ +M +CW P RP + + +K P + ++ +E ++ W R Y +++ + G ++ C QV+ +W E +I ++ L+ Q+ P+++ F L + + + L V A L DG + +F P+ T +D + + K+ + D + YP K M + + +E+W +G ++++D S I +E + + + S++ S E
Sbjct: 98 GDLEMVRYLLSKRL-VELPTEPTDDNPAVVAAYFGHTAVVQELLESLPG-----------PCSPQRLLN-W------------------MLALACQRGHLGVVKLLVLTHGADPESYAVRKNEFPVIVRLPLYAAIKSGNEDIAIFLLRHGAYFCSYILLDSPDPSKHLLRKYFIEASPLPSSYPGKTALRVK----------WSHLRLPWVDLDWLIDISCQITELDLSANCLATLPSVIPWGLINLRKLNLSDNHLGELPGVQSSDEIICSRLLEIDISSNKLSHLPPGFLHLSKLQKLTASKNCLEKL--FEEE-------NATNWIGLRKLQELDISDNKLTELPALFLHSFKSLNSLNVSRNNLKVFPDPWACPLKCCKASRNALECLPDKMAVFWKNHLKDVDFSENALKEVPLGLFQLDALMFLRLQGNQLAALPPQEKWTCRQLKTLDLSRNQL-GKNE-DGLKTKRIAFFTTRGRQRSGTEAASVLEFPA-FLSESLEVLCLNDNHLDTVPPSVCLLKSLSELYLGNNPGLRELPPELGQLGNLWQLDTEDLTISNVPAEI--QKEGPKAMLSYLRAQLRKAEKCKLMKMIIVGPPRQGKSTLLEILQTGRAPQVVHGEATIRTTKWELQRPAGSR-------AKVESVEFNVWDIGGPASMATVNQCFFTDKALYVVVWNLALGEEAVANLQFWLLNIEAKAPNAVVLVVGTHLDLIEAKFRVERIATLRAYVLALCRSPSGSRATGFPDITFKHLHEISCKSLEGQEGLRQLIFHVTCSMKDVGSTIGCQRLAG----RLIPRSYLSLQEAVLAEQQRRSRDDDVQYLTDRQLEQLVEQTP-DNDIKDYEDLQSAISFLIETGTLLHFPDTSHGLRNLYFLDPIWLSECLQRIFNIKGSRSVAKNGVI-RAEDLRMLLVGTGFTQQTEEQYFQFLAKFEIALPV-ANDSYLLPHLLPS-KPGLDTHGMRH---PTANT-----IQRVFKMSFVPVGFWQRFIARMLISLAEMDLQLF-ENKKNTKSRNRKVTIYSFTGNQRNRCSTFRVKRNQTIYWQEGLLVTFDGGYLSVES--SDVNWKKKKSGGMKIVCQSEVRDFSAMAFITDHVNSLIDQWFPALTATESDGTPLMEQYVPCPVCETAWAQ---------------HTDPSEKSEDVQY---FDMEDCVLTAIERDFISCPRHPDLPVPLQELVPELFMTDFPARLFLENSKLEHSEDEGSVLGQGGSGTVIYRARYQGQPVAVKRFH----IKKFKN---------------FANVPADTMLRHLRATDAMKNFSEFRQEASMLHALQHPCIVALIGISIHPLCFALELAPLSSLNTVLSENAR-----------DSSFIP--LGHMLTQKIAYQIASGLAYLHKKNIIFCDLKSDNILVWSLDVKEHINIKLSDYGISRQSFHEGALGVEGTPGYQAPEIRPRIVYDEKVDMFSYGMVLYELLSGQRPALGHHQ-LQIAKKLSKGIRPVLGQP---EEVQFRRLQALMMECWDTKPEKRPLALSVVSQMKDPTFATF-----------MYELCCGKQTAFFSSQGQEYTVVFWDGKEESRNYTVVNTEKG----LMEVQRMCCPGMKVSCQLQVQRSLWTATEDQKIYIYTLKGMCPLNTPQQALDTPAVVTCF--------LAVPVIKKNSYL-VLAGLADGLVAVF-----------PVVRGTPKDSCSYLCSHTANRSKFSIADEDARQNPYPVKAMEVVNSGSEVWYSNGPGLLVIDCASLEICRRLEPYMAPSMVTSVVCSSE 1744 The following BLAST results are available for this feature:
BLAST of TCONS_00001154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.