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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001143 ID=TCONS_00001143|Name=TCONS_00001143|organism=Clytia hemisphaerica|type=transcript|length=842bp
CTCCACAAGTTAAAACAAGGTTAGCTTATTTTGTAGATCaatctttttac
attttctttatcaatagatgaaaaatagaaaaatgaatCACGATTTAACT
AGTAATTATGGACAAGGCAGAAGCACTTTTTAATGACAAGATTGATGGAA
ATGTCGTTGGACCATCAACTGATTCATCGGGCAGTGAACTGATCTATTTA
TGTTATAATGGCAACTTTCAAACCATCCAGCTGCTCATCAAAAGTAATCA
ACAATTATTGTTGGACAAAGCTTGTGGAGGGATTGGTGATTGTCCAAAGG
TTGAGCATAAACAAACATGGAAGAAGTTGCAAGAAGTGCTGTTGAGAAAA
CATGAAACTTACACAGttGGTGATTTATTGCTTTGTGTGGCGTGTATTTT
GCAGAACCATACCCTGGTAGAATTACTGACCAACAGAGGCGTAGATGTCA
ACCATGGCACAACAAAACACGAACTTTTATCTCCCTTATACATTGCTTGC
ATTAACGAGGACATAGAAATGATTACCTACTTAATGAACAATAAAGCAGA
AGTGATTTCCGTTATCGCCAAAGAATTTCCTACTCTAATCTCACAAGTGT
TAGAAAAACGTATTGAAGAATACAAAGTACCAAGACGGAAGGGGAAGATG
AAGAATTCACAAAAGAAGAAAACCATGTATCGTTTGTGTTGGGAGAATTC
ACACCTCCATGCTTTGAATAAGGATTGGTTCATGGTGGAGAAGTATAACA
TCACCAGAGTAGAGTTACCAAGGAACAAATTGACCAAGCTGGTTGACGGT
TTCTTCCAGTTGTTACCACTACTGGAAGAACTAGATGTTGCG Run BLAST on NCBI transcript from alignment at sc0000007:505954..507929- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001143 ID=TCONS_00001143|Name=TCONS_00001143|organism=Clytia hemisphaerica|type=transcript|length=1976bp|location=Sequence derived from alignment at sc0000007:505954..507929- (Clytia hemisphaerica)
CTCCACAAGTTAAAACAAGGTTAGCTTATTTTGTAGATCAATCTTTTTAC
ATTTTCTTTATCAATAGATGAAAAATAGAAAAATGAATCACGATTTAACT
AGTAATTATGGACAAGGCAGAAGCACTTTTTAATGTAAGTATTTCACCAG
ATTTATGCAGTTTTTCTCATTTATCTTGAAAGAAATTTGTTTAAGAAGTA
TTTTAGAATTTGTTTGCAGCATAAATTGAAAGATGGAAAATCCTTTTCCT
AAATGCCGAAAGTTTCCATAAGGTGTATATCAGACAATTTCGAAAGAATA
CCTAAGAGGCAGAATCACTTAAATAAGAACTCTCTTAGTAACGTAGACAG
GAGGGGCGAAAATTTGTGTAGGAGAGCAGACTTTTGTGACACAGTAATTA
TCTATTCATATTATAAAAAGATAATTACTGTGTCATGAAAATCTGCTCTC
CTACACAGATTTTGCGCCCCCCCTGTCTACGCTATTGTCTCTGGATAATA
AAGATCAGCGTAAGACTTCCAAAATCAAAATATAAAATGCAAATGAATAT
GAGTATTTTTGATAAGAGTTCACATCATGGTCCTCGGTCTATGGGGATCT
ATATACCCCTACAAAATTAAAATCAAATGAGTACCATCCTGCTAATAAGA
ATAGATTTTCATAGAGGCTCGATATCTATGCTCCACTCTCTTCAGGACAA
GATTGATGGAAATGTCGTTGGACCATCAACTGATTCATCGGGCAGTGAAC
TGATCTATTTATGTTATAATGGCAACTTTCAAACCATCCAGCTGCTCATC
AAAAGTAATCAACAATTATTGTTGGACAAAGCTTGTGGAGGGATTGGTGA
TTGTCCAAAGGTTGAGCATAAACAAACATGGAAGAAGTTGCAAGAAGTGC
TGTTGAGAAAACATGAAACTTACACAGGTTGTGTTTTTATTGGCTTCTAT
GAGAGCTTAGATCTAAGTTCCACTTGTTTTAACTCTGTTTGTAGACGAAA
ATTCGTCTAGTTGAAAAAATTGATTTCAGTAGTAAGAGTTTTTATAAGAT
TGACTAATCTTTGTGATTCATTTTCAACTGGTTCTCTGTTTGCTACATGT
CAGTTATTTAGTTCAGCAGTCCATATCTTGAAATCTCCAGTTTATGAACG
TCTTTTTCTCTTTTAGTTGGTGATTTATTGCTTTGTGTGGCGTGTATTTT
GCAGAACCATACCCTGGTAGAATTACTGACCAACAGAGGCGTAGATGTCA
ACCATGGCACAACAAAACACGAACTTTTATCTCCCTTATACATTGCTTGC
ATTAACGAGGACATAGAAATGATTACCTACTTAATGAACAATAAAGCAGA
AGTGATTTCCGTTATCGCCAAAGAATTTCCTACTCTAATCTCACAAGTGT
TAGAAAAGTGAGGTTCCTCTTTAAATCAACCAGGATTTATAACTTATTCC
TTATAACCCAACTTATTCATCTACTCCTTTCTGAATCGTACAAAACACGC
CTATCAGCCCTTTAAAGGAGCCTGGGTTATAAAGATTGACGTTCTGTGTC
CATGGGATTCCAGATATAATGTGAAACTTCAATTCTTCGTGGTTAACTCT
CGTGGTTAGTCTCTTTGCGTTTTAAAGAATGATAGGTGTATCAAGGATCT
TTCTCAAGTCTTTTATTTTATATCTTGGAAGGTATGGTACATTGATATAA
TCAACCAACTTCTGAGCTGTCTTTGTTTATGCTTTTTTCAGACGTATTGA
AGAATACAAAGTACCAAGACGGAAGGGGAAGATGAAGAATTCACAAAAGA
AGAAAACCATGTATCGTTTGTGTTGGGAGAATTCACACCTCCATGCTTTG
AATAAGGATTGGTTCATGGTGGAGAAGTATAACATCACCAGAGTAGAGTT
ACCAAGGAACAAATTGACCAAGCTGGTTGACGGTTTCTTCCAGTTGTTAC
CACTACTGGAAGAACTAGATGTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001143-exon-sc0000007-1575043694:507796..507929 | TCONS_00001143-exon-sc0000007-1575043694:507796..507929 | Clytia hemisphaerica | exon |
| TCONS_00001143-exon-sc0000007-1575043694:507003..507234 | TCONS_00001143-exon-sc0000007-1575043694:507003..507234 | Clytia hemisphaerica | exon |
| TCONS_00001143-exon-sc0000007-1575043694:506523..506763 | TCONS_00001143-exon-sc0000007-1575043694:506523..506763 | Clytia hemisphaerica | exon |
| TCONS_00001143-exon-sc0000007-1575043694:505954..506188 | TCONS_00001143-exon-sc0000007-1575043694:505954..506188 | Clytia hemisphaerica | exon |
| TCONS_00001143-exon-sc0000007-1510915933:507796..507929 | TCONS_00001143-exon-sc0000007-1510915933:507796..507929 | Clytia hemisphaerica | exon |
| TCONS_00001143-exon-sc0000007-1510915933:507003..507234 | TCONS_00001143-exon-sc0000007-1510915933:507003..507234 | Clytia hemisphaerica | exon |
| TCONS_00001143-exon-sc0000007-1510915933:506523..506763 | TCONS_00001143-exon-sc0000007-1510915933:506523..506763 | Clytia hemisphaerica | exon |
| TCONS_00001143-exon-sc0000007-1510915933:505954..506188 | TCONS_00001143-exon-sc0000007-1510915933:505954..506188 | Clytia hemisphaerica | exon |
| TCONS_00001143-exon-sc0000007-1491911889:507796..507929 | TCONS_00001143-exon-sc0000007-1491911889:507796..507929 | Clytia hemisphaerica | exon |
| TCONS_00001143-exon-sc0000007-1491911889:507003..507234 | TCONS_00001143-exon-sc0000007-1491911889:507003..507234 | Clytia hemisphaerica | exon |
| TCONS_00001143-exon-sc0000007-1491911889:506523..506763 | TCONS_00001143-exon-sc0000007-1491911889:506523..506763 | Clytia hemisphaerica | exon |
| TCONS_00001143-exon-sc0000007-1491911889:505954..506188 | TCONS_00001143-exon-sc0000007-1491911889:505954..506188 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:505954..507929 - |
Blast
The following BLAST results are available for this feature:
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