TCONS_00001116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001116
Unique NameTCONS_00001116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1093

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001116 ID=TCONS_00001116|Name=TCONS_00001116|organism=Clytia hemisphaerica|type=transcript|length=1093bp
aggaaatcaaatcaaaacactaAGCGAAATACCAGGAGGGAAAGACAAAC
AATTTCAAAACCAACTTAAAGGAACACCATGCAGAACTTCTTATTGTTAC
TGTGTAGTATGGTGATGGTATTATTGGTGGCACAAATAAACTGTAAAACT
TACTACACTTATGATCAATTCCAAGCTTGCGAAACAAATTGTAAATCAGA
AAAGATAAATTGTCTAGGAGGCTCGAGATCAATTGATGAATTTAAAGACT
GCTGGCCAGAATTCAATGGATGTTTGAGACAATGCCACAAGAAACTGGTA
CcaccaaaaaagaaaagaagtttCAACTCTTGGAAAATGTTATAGTAGTA
ATTCAAACGTATTGTAAATAATCATTTTATTAATACCACTTAAGTCAGtg
gaaagtagaattttaactgAAGTAACTGTTTAGGCTGGCCCTAGTCAGTA
AGGAAAAAAGTTGGAAAGAACGAATcattagaaaaagtaaaataatatTC
TTACTAATAAAAGTAACAAGTGCCATTCTATGTAATTTCATATACAATTA
CATCTCTTTATTTATTAANTTGTAACATAATTTGATAAAGTGGTTCGGGG
CAATTTGGTGGCATGGGCATCCTGTAACCCCTTTCAACTTGGGCAATTGT
CTCTGCATTTGACATACCTGGATATGGTATGCGACCTTTCGTAACTATCT
CAGTAAGAAGGATACCGAAAGACCAAACGTCCGATTTGATTGTAAAGGTA
TTATAAAGAGCTGCTTCTGGAGCAGTCCACTTGATAGGGAATTTAGCGCC
TTCGTGAGCTGTGTATTCATCATCCTCGATTAAACGAGCTAAACCAAAAT
CTGCTACTTTACAAACATAATTTTCACCAACTAAAATATTACGGGCAGCT
AAATCACGATGAATATATCCTTGTGTTTCAAGGTATGCCATACCAGCAGC
AACTTGAGCAGACATATCAATGAGTGTGGGGAGTTGTAGATTTGCTCCAT
CACCTCTAGCTAAGTAATCCAGTAACGACCCACACGTCATATACTCAGTA
ACAATATAGATGGGTTCCTTGTCCGAACAGATGGCATAaagct
Run BLAST on NCBI

transcript from alignment at sc0000007:368232..369457-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001116 ID=TCONS_00001116|Name=TCONS_00001116|organism=Clytia hemisphaerica|type=transcript|length=1226bp|location=Sequence derived from alignment at sc0000007:368232..369457- (Clytia hemisphaerica)
AGGAAATCAAATCAAAACACTAAGCGAAATACCAGGAGGGAAAGACAAAC
AATTTCAAAACCAACTTAAAGGTATATACTTACTTTCTATGACTTGGCTT
TATCTTTCACACTTCTTCTTGGTTATTACAAGCTGTATTATTTTCATTTT
TAACTCTGTAGAAAAATAAAAGCAAATTTCATCATAATGAAGTTTTTTCT
TTAGGAACACCATGCAGAACTTCTTATTGTTACTGTGTAGTATGGTGATG
GTATTATTGGTGGCACAAATAAACTGTAAAACTTACTACACTTATGATCA
ATTCCAAGCTTGCGAAACAAATTGTAAATCAGAAAAGATAAATTGTCTAG
GAGGCTCGAGATCAATTGATGAATTTAAAGACTGCTGGCCAGAATTCAAT
GGATGTTTGAGACAATGCCACAAGAAACTGGTACCACCAAAAAAGAAAAG
AAGTTTCAACTCTTGGAAAATGTTATAGTAGTAATTCAAACGTATTGTAA
ATAATCATTTTATTAATACCACTTAAGTCAGTGGAAAGTAGAATTTTAAC
TGAAGTAACTGTTTAGGCTGGCCCTAGTCAGTAAGGAAAAAAGTTGGAAA
GAACGAATCATTAGAAAAAGTAAAATAATATTCTTACTAATAAAAGTAAC
AAGTGCCATTCTATGTAATTTCATATACAATTACATCTCTTTATTTATTA
ANTTGTAACATAATTTGATAAAGTGGTTCGGGGCAATTTGGTGGCATGGG
CATCCTGTAACCCCTTTCAACTTGGGCAATTGTCTCTGCATTTGACATAC
CTGGATATGGTATGCGACCTTTCGTAACTATCTCAGTAAGAAGGATACCG
AAAGACCAAACGTCCGATTTGATTGTAAAGGTATTATAAAGAGCTGCTTC
TGGAGCAGTCCACTTGATAGGGAATTTAGCGCCTTCGTGAGCTGTGTATT
CATCATCCTCGATTAAACGAGCTAAACCAAAATCTGCTACTTTACAAACA
TAATTTTCACCAACTAAAATATTACGGGCAGCTAAATCACGATGAATATA
TCCTTGTGTTTCAAGGTATGCCATACCAGCAGCAACTTGAGCAGACATAT
CAATGAGTGTGGGGAGTTGTAGATTTGCTCCATCACCTCTAGCTAAGTAA
TCCAGTAACGACCCACACGTCATATACTCAGTAACAATATAGATGGGTTC
CTTGTCCGAACAGATGGCATAAAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000627XLOC_000627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001116-exon-sc0000007-1575043694:369387..369457TCONS_00001116-exon-sc0000007-1575043694:369387..369457Clytia hemisphaericaexon
TCONS_00001116-exon-sc0000007-1575043694:368232..369253TCONS_00001116-exon-sc0000007-1575043694:368232..369253Clytia hemisphaericaexon
TCONS_00001116-exon-sc0000007-1510915933:369387..369457TCONS_00001116-exon-sc0000007-1510915933:369387..369457Clytia hemisphaericaexon
TCONS_00001116-exon-sc0000007-1510915933:368232..369253TCONS_00001116-exon-sc0000007-1510915933:368232..369253Clytia hemisphaericaexon
TCONS_00001116-exon-sc0000007-1491911889:369387..369457TCONS_00001116-exon-sc0000007-1491911889:369387..369457Clytia hemisphaericaexon
TCONS_00001116-exon-sc0000007-1491911889:368232..369253TCONS_00001116-exon-sc0000007-1491911889:368232..369253Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:368232..369457 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.252014	0	0.169351	5.54714	4.10305	0	0.303319	0	1.66654	11.9881	21.2082	12.23	12.6483	0.247516	0.207919	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR020635Tyr_kinase_cat_dom
IPR008266Tyr_kinase_AS
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0004713protein tyrosine kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0004713 protein tyrosine kinase activity
Blast
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BLAST of TCONS_00001116 vs. Swiss-Prot (Human)
Match: SRC (Proto-oncogene tyrosine-protein kinase Src OS=Homo sapiens GN=SRC PE=1 SV=3)

HSP 1 Score: 269.24 bits (687), Expect = 2.375e-84
Identity = 127/174 (72.99%), Postives = 145/174 (83.33%), Query Frame = -3 
Query:  570 LYAICSDKEPIYIVTEYMTCGSLLDYLARGDGANLQLPTLIDMSAQVAAGMAYLETQGYIHRDLAARNILVGENYVCKVADFGLARLIEDDEYTAHEGAKFPIKWTAPEAALYNTFTIKSDVWSFGILLTEIVTKGRIPYPGMSNAETIAQVERGYRMPMPPNCPEPLYQIMLQ 1091
            LYA+ S+ EPIYIVTEYM+ GSLLD+L    G  L+LP L+DM+AQ+A+GMAY+E   Y+HRDL A NILVGEN VCKVADFGLARLIED+EYTA +GAKFPIKWTAPEAALY  FTIKSDVWSFGILLTE+ TKGR+PYPGM N E + QVERGYRMP PP CPE L+ +M Q
Sbjct:  328 LYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQ 500
The following BLAST results are available for this feature:
BLAST of TCONS_00001116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRC2.375e-8472.99Proto-oncogene tyrosine-protein kinase Src OS=Homo... [more]
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