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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001106 ID=TCONS_00001106|Name=TCONS_00001106|organism=Clytia hemisphaerica|type=transcript|length=2319bpRun BLAST on NCBI protein sequence of TCONS_00001106-protein >TCONS_00001106-protein ID=TCONS_00001106-protein|Name=TCONS_00001106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp MLPKLPLSSIKHTNVNVGNAIIVGANFISSNYRQGFDISIPLFNSLTTRDRun BLAST on NCBI transcript from alignment at sc0000007:289023..303115- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001106 ID=TCONS_00001106|Name=TCONS_00001106|organism=Clytia hemisphaerica|type=transcript|length=14093bp|location=Sequence derived from alignment at sc0000007:289023..303115- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:289023..303115- >TCONS_00001106 ID=TCONS_00001106|Name=TCONS_00001106|organism=Clytia hemisphaerica|type=CDS|length=22764bp|location=Sequence derived from alignment at sc0000007:289023..303115- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001106 vs. Swiss-Prot (Human)
Match: EXT2 (Exostosin-2 OS=Homo sapiens GN=EXT2 PE=1 SV=1) HSP 1 Score: 468.389 bits (1204), Expect = 2.136e-153 Identity = 240/587 (40.89%), Postives = 369/587 (62.86%), Query Frame = 1
Query: 508 SRACCFCXLVPAXXXXXXXXXXXXXXXFALNSVEGWSNGSNHLIFSMLPKLPLSSIKHTNVNVGNAIIVGANFISSNYRQGFDISIPLFNSLTTRDPHKHQIKYRQTRSWKIIISQISVDVEHRKTLRHLESSDA-GVFMLRKCLNDAPEIPNHFEQLCKDGLPFKYPTVLKGGSFCLILRGPYYATTLLLDAMMMGCIPVIAMDEYIMPFEDVIDWTSASVRIREYQLVSLLQILNRFNEHEIREKRAKAFYLWKRFFSSIGKIMDGVLDVLHDRVYVSQKRSYEDWNGDTGIFSQNLVKPGPSTSMYLPSRSASSGEGFTAVILTYNRMEMCMTLMKQLEKVPSLKKIIVVWNNPYIDPTAND-WPKLRKPWSMVRTKTNRLTNRFYPFEEMETEAVMAIDDDILMLTVDEIEFGYQTWKEFPDRLVGFPARFHITNPKELINGKRLQYKYESEWSNSLSMVLTGAAFYHQVYNHWFTHMLPRKTIHYINEKMNCEDIAMNFLISNLTDKAPIKVTPRKRFTCAQCRRNDSLWSESSHFIKRSECLSIFTKHFGKMPLRPVEFRADPVLYQENVPLDMMAFPDIG 2262
+RAC F VP++D+L +N L ++ A+ + W G+NHL+F+MLP P +V A++ G F + YRQG+D+SIP+++ L+ K R + ++ SQ+ + E+R+ L L+ V +L KC N + + + + C F YP VL+ +FC++LRG +L D + GC+PV+ D YI+PF +V+DW ASV + E ++ + IL + +I E + +A + W+ +F SI I L +++DR+Y SYE+WN + ++ P ++LP S +GFTA++LTY+R+E ++ ++ KVPSL K++VVWNN +P + WPK+R P +VRT N+L+NRF+P++E+ETEAV+AIDDDI+MLT DE++FGY+ W+EFPDRLVG+P R H L + + ++KYESEW+N +SMVLTGAAFYH+ +N+ +T+ +P ++++ MNCEDIAMNFL++N+T KA IKVTPRK+F C +C D L + +H ++RSEC++ F FG MPL+ VE RADPVLY+++ P + +FP+IG
Sbjct: 148 NRACLF---VPSIDVLNQNTLRIKETAQAMAQLSRWDRGTNHLLFNMLPGGPPDYNTALDVPRDRALLAGGGFSTWTYRQGYDVSIPVYSPLSAEVDLPE--KGPGPRQYFLLSSQVGLHPEYREDLEALQVKHGESVLVLDKCTNLSEGVLS-VRKRCHKHQVFDYPQVLQEATFCVVLRGARLGQAVLSDVLQAGCVPVVIADSYILPFSEVLDWKRASVVVPEEKMSDVYSILQSIPQRQIEEMQRQARWFWEAYFQSIKAIALATLQIINDRIYPYAAISYEEWNDPPAVKWGSVSNP-----LFLPLIPPQS-QGFTAIVLTYDRVESLFRVITEVSKVPSLSKLLVVWNNQNKNPPEDSLWPKIRVPLKVVRTAENKLSNRFFPYDEIETEAVLAIDDDIIMLTSDELQFGYEVWREFPDRLVGYPGRLH------LWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGDIKNWVDAHMNCEDIAMNFLVANVTGKAVIKVTPRKKFKCPECTAIDGLSLDQTHMVERSECINKFASVFGTMPLKVVEHRADPVLYKDDFPEKLKSFPNIG 716 The following BLAST results are available for this feature:
BLAST of TCONS_00001106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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