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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001103 ID=TCONS_00001103|Name=TCONS_00001103|organism=Clytia hemisphaerica|type=transcript|length=2965bpRun BLAST on NCBI protein sequence of TCONS_00001103-protein >TCONS_00001103-protein ID=TCONS_00001103-protein|Name=TCONS_00001103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=706bp MAGDFVFIFGLFAVVVFSPFNDGRQLSPSVSVQPTTENWLELPVKSLANIRun BLAST on NCBI transcript from alignment at sc0000007:257676..261909- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001103 ID=TCONS_00001103|Name=TCONS_00001103|organism=Clytia hemisphaerica|type=transcript|length=4234bp|location=Sequence derived from alignment at sc0000007:257676..261909- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:257676..261909- >TCONS_00001103 ID=TCONS_00001103|Name=TCONS_00001103|organism=Clytia hemisphaerica|type=CDS|length=12726bp|location=Sequence derived from alignment at sc0000007:257676..261909- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001103 vs. Swiss-Prot (Human)
Match: CAH13 (Carbonic anhydrase 13 OS=Homo sapiens GN=CA13 PE=1 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.879e-32 Identity = 89/269 (33.09%), Postives = 134/269 (49.81%), Query Frame = 1 Query: 1495 NGPSSWQRLNGRWTCEGRKQSPININTNTVIQDQIAKNIIIKQFPPHVPLSGIIKNNGHAPT--FSLTEGVAVRLSGGTLLNDFYMKQIHFHFGCTEKTGSEHFIDGVQFPLEMHLVFWDNSTYSTFSQAAKGDNGIAVVAILFQREDITGSQPEDLTPLHQITGLLKNIRAEGEGLVITEDFGVQFD--QLVPSIKDRQKADRVFIYSGSLSTPGCYESVTWMVYANTPHVTNKQLQEFRQLRSTKVNREGT-MCDNYRPLQKTFGRK 2286
NGP W+ +G +QSPI I T V D + + IK P + II N+GH+ F TE +V L GG L + ++Q+H H+G + GSEH +DGV + E+H+V W++ Y +F +AA +G+AV+ + Q E + L +IT L +I+ +G+ T FD L+P D + Y GSL+ P ESVTW+V +++++QL +FR L T + N+RP Q GRK
Sbjct: 12 NGPIHWKEFFP--IADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSS---AKIISNSGHSFNVDFDDTENKSV-LRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWNSDKYPSFVEAAHEPDGLAVLGVFLQIG-------EPNSQLQKITDTLDSIKEKGKQTRFT-----NFDLLSLLPPSWD------YWTYPGSLTVPPLLESVTWIVLKQPINISSQQLAKFRSLLCTAEGEAAAFLVSNHRPPQPLKGRK 256 The following BLAST results are available for this feature:
BLAST of TCONS_00001103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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TCONS_00001103 (transcript) - C. hemisphaerica
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Overview
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