TCONS_00001073 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001073
Unique Name	TCONS_00001073
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1628

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000007:1366046..1373423+
coding sequence from alignment at sc0000007:1366046..1373423+

transcript sequence

>TCONS_00001073 ID=TCONS_00001073|Name=TCONS_00001073|organism=Clytia hemisphaerica|type=transcript|length=1628bp
CTTTCATTTGCGTCTTGGTCTTGGTGGGAGCACATCATCCAACATCCAAA
AGCATTttacaaaaatctcaaaatttcctTGCCTTTTAATTCTTCAAAAA
TTCCTCCCAACAAATCTTTGAGGAGTGCGCGGCAGTTCGCAAGGAGTGGA
CTTGGCCTGAAAGCAACAAAGCTTCTGCCACCTGTTGAACTCTCCTGGGA
CAAAGCCTACGCTGGAATTAGCTGATATTTGCTAAGCTAACACAAGAACT
ACTGAGCCAAAATGAAGCAAGTAAAGCTACATACAGGATCAGTAATTGAC
GTCTGTGATGACGAATTGAATCTGACAGATTACATTCACACCAAACTGAA
CTCAGCAGGGCGAGAAGATAAAGATGATCCCTTTTTTGTCTGTGATCTTG
GTGATATTGTCAAGAAATGGAGACGATTCCAAAGAGTACTTCCAATGGTC
AAACcttattttgCCATGAAGTGCAACCCAGACCTAGAGATCATTAAACT
CATGATCAAATTAGGTTCAAACTTTGATTGTGCAAGCAAAATGGAGATCA
AGACCTTACTTGATTTAGGGGTGGCTGCTGATCGAATCATCTTTGCAAAC
CCCTGCAAACAAACATCATTTATCAAataTTCAGCAGCAAATAATGTCAA
ATTGATGACTTTTGATAATGAAATGGAACTGCGAAAAGTTAAGCAATTTT
ATCCTGATGCAGAGCTTGTTCTTCGAATCAGAGTTGATGATTCAAAATCA
CTTTGCAAGTTTGGAGTTAAGTTTGGGGCAGAACCTTGCAATACAATGCA
CCTTTTACAAACAGCCAAACAGCTTCACTTGAATGTTGTTGGTGTTAGct
TTCATGTTGGAAGTGGTTGTTATGACGCCTCTTTGTTTTATGATGCCGTC
AAGTTGTCAAGGAAAGTCTTTGATGAAGGACGTGAAGTTGGATATCAATT
TTCTATGTTAGATGTTGGTGGTGGCTTCCCTGGAGATGATTTAGCTAAAG
TCTCATTTGAAGAGACTGCTGAAAAGTTGAAGGATGGTTTCAATGCGTTT
TTCCCACCAGAAATGAATGTGAAATTTATTGCAGAGCCTGGTCGATATTT
TGTGGCATCTGCATGTACAAACGTCTGCAACATCACTTCTGTTCGGAAGT
TAGAATCAGGTAATGAAAGCAATTTCATGTACTACATCAATGACGGTGTT
TATGGATCATTCAACTGTGTCATGTTTGATCATTACAACCCAACCGCAAA
TGCCCTTCATGTCACCGATGGACCTGTCTTCAAATGTAGTGTTTGGGGAC
CAACTTGTGATTCTCTGGATTGTATCTCCAAGTCTACACTTCTACCAAGG
ATGAACATTGGCGATTGGATGTATTTCCAGAACATGGGAGCGTACACTAT
CGCGGCAGCATCTAAATTTAATGGCTTCAAACAACCCAAAGTCATTTATA
TGTGTCGTCGCAAATTTGCTGATACTGTCACTGCTGAATCAGTGAATATT
GACACCAAAATGGAATTGATATCTAAGAAAGTTTTACATCATCACCCTCA
AAGTGTTGTAAAAAGCGCTGCAGTAAACTGAATATATTGTCATGCAGTGC
CAAGTAGATTAAATATGAATATAGCCGT

Run BLAST on NCBI

protein sequence of TCONS_00001073-protein

>TCONS_00001073-protein ID=TCONS_00001073-protein|Name=TCONS_00001073-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MKQVKLHTGSVIDVCDDELNLTDYIHTKLNSAGREDKDDPFFVCDLGDIV
KKWRRFQRVLPMVKPYFAMKCNPDLEIIKLMIKLGSNFDCASKMEIKTLL
DLGVAADRIIFANPCKQTSFIKYSAANNVKLMTFDNEMELRKVKQFYPDA
ELVLRIRVDDSKSLCKFGVKFGAEPCNTMHLLQTAKQLHLNVVGVSFHVG
SGCYDASLFYDAVKLSRKVFDEGREVGYQFSMLDVGGGFPGDDLAKVSFE
ETAEKLKDGFNAFFPPEMNVKFIAEPGRYFVASACTNVCNITSVRKLESG
NESNFMYYINDGVYGSFNCVMFDHYNPTANALHVTDGPVFKCSVWGPTCD
SLDCISKSTLLPRMNIGDWMYFQNMGAYTIAAASKFNGFKQPKVIYMCRR
KFADTVTAESVNIDTKMELISKKVLHHHPQSVVKSAAVN

Run BLAST on NCBI

transcript from alignment at sc0000007:1366046..1373423+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001073 ID=TCONS_00001073|Name=TCONS_00001073|organism=Clytia hemisphaerica|type=transcript|length=7378bp|location=Sequence derived from alignment at sc0000007:1366046..1373423+ (Clytia hemisphaerica)
CTTTCATTTGCGTCTTGGTCTTGGTGGGAGCACATCATCCAACATCCAAA
AGCATTttacaaaaatctcaaaatttcctTGCCTTTTAATTCTTCAAAAA
TTCCTCCCAACAAATCTTTGAGGAGTGCGCGGCAGTTCGCAAGGAGTGGA
CTTGTAAGTATTTGAATGAATTATTCCCTTCATTTCTCAATGTTGAATAG
ACCTCTGTCAGTAGCCATtccgggtttgcttgttttttatttgacgctta
tcaaaatcttcaattttaggtcaaactttgacaagcaatttTTCTTTGGG
TAGTTGAgctttaaaattaattatttttgagtaatttagagttttctttt
agctttccaaccatatataatatgcaggtgtaatattctaTACTTTTGTT
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNcgaaaatacctgagaaatccaat
ggtgctactctctgaaattaattctttcattaaagttattaatttttact
tttcatactttggcaagcattttcagcctgaaaatgaggactagaattat
agagagtgataccactgaaaaatttgacccttttttagcctagaacagtt
atttatatgccatggggaatttttccttcacagcgctttgattacaaaga
taggtaggttcagcTATTTTAGCTTCCGCTTTAtaacatttttattgttt
tttgcaatgcaatgtcttctttttcaaaaaaatgtctttccatttcttcc
ttgaagtgttagcaagccattacaaaaagaatttgataaaagtctgcagt
caaaatgaagatatctggaatatcttgattcaatacaaaagcttgaattt
tcagGATATCTTCATtcaatacaaaagcttgaattttcaattttcgcagc
atatttcggtgccatttcatatgccatttctgggctatattgtcaacctc
aaatgtctaaaaaggtgctattttagcggaaccaaaatctcaatatctcc
ggaaccgcttatcattaggaagtgtatgacccctcattttttttcttttt
tgaagctctacaaggtgaactaggtttgattgccaccagaatagtttcaa
tttgaccctggaatggctacGCTGTCattaatgtttttttcattattttg
ttatGTGATCTTGACCCTATTATGTATTAGGGCCCTGTAGTAAGTGGCCA
TTAACTTTGATTCCTGTACAGAAAAGAAATAGGTTTGATTATCATTTCAC
TGGtcttcaatagaccttttttcaaagaggccaccctgttgaataattat
gtagtccagcagaaaaacaatgataaatcCATGCATAATTAATACAATac
gcatgatacagtaattgtgcatggctctatcattgtttttatggctgaac
tacataattattcaacaggacgtcctctttgaaaaaaggtctatacccTG
AAGTCAGGgtataacttgcatcagtagaaGGAAACTTACATAGCCAGtta
gttacatcaatatgccaaaaacattttgttcaaccaccttcacttcaaga
tagaccaccatgtggctttcagccttttCAGCCAGTTTTCACAACAAAAG
CCAAGTATATTTTCAACAATTGTGCCTCTACATCCAGCTATGCACAATTT
CTCGTAAATATTGTCTAACTAAAAAAATTCCATTAATACTCTAGTTGATG
GAGGATCATCATCATAGAGCTTCCATAATTCAACACACAGGCTTTCTTCA
CTTTATTTAACACTTGGGTCTTTAAatggatacatcattgaatattgaat
atgccattgttcttcaaagtttgaagttttttttcacaaaaagttCATGT
TCATCGATATAATAATGTAAGTTTGAGAATCAAGCCTTTGGTTTCAATAG
GCTCAAGCTTTCTCAGTTGCCAATAATGACATAAAAATAATATCAGCCAA
TGCAACACATCCAAGTTAAAGCAGGCTGCATAGTAAAAAACATTGCTGAC
TGCCTCCAAAATATGTACGTTTAAAAAATATCCCTTCTTTGGTTACCATC
TTTTCTTTAAGTGTGTTTTTGCTTTGGACAGCTATGCACTCCTAACTCTT
CAAGGATTGAAGCCTCTGAGAATTATGTTGTCATCCCACAAGATATCAAA
TTTGATACTTCCATAAAAAGTATCAAGAGCAATGGTATTTTCAGCCTCCA
TGATTGTCCATAACTCCACAAATTTACCATTATTAGCATAACACACTTTT
GATTATGGTTGGCTATCCGTGTAATTAGTCATTTTCACCATTTCGATGTA
CACCAGAAAACCTGGAATCCTTGTTTGGTTTTTAAAAGATTAAGTCACAC
TAGCTTCTGGCTAAAGTGTGTGTCAAAAATTAATGCTGCAAAAACGCTCT
ATTGCTTACTTCAATCGCAAGCAAAACTTCTGAGTGAagggatttatgaa
aaaataaatctgCATTTTCAATAAGATTTACAGAGAAGAAATCCTTAAGA
AATTCCCTAAATTTTGAGCCAAAGATAAAGATTTGGCTGGAAAATTTGCA
TGTGTGGAATTAGTTTTACTTAAGAGAGTACTCTAGGCCTTGAGAAATCG
AAGTGCTATCTTGGGAATtaaataacaaattttggttggtttatTAGCTG
GCTGCTGCACACTNGCAGTTAGTCAAACTAGCTTCTGGCTAAAGTGTGTG
TCAAAAATTAATGCTGCGAAAATGCTCTATTGCTTACTTCAATCGCAAGC
AAAACTTCTGAGTGAagggatttatgaaaaaataaatctgCATTTTCAAT
AAGATTTACAGAGAAGAAATCCTTAAGAAATTCCCTAAATTTTGAGCCAA
AGATAAAGATTTGGCTGGAAAATTTGCATGTGTGGAATTAGTTTTACTTA
AGAGAGTACTCTAGGCCTTGAGAAATCGAAGTGCTATCTTGGGAATtaaa
taacaaattttggttggtttatTAGCTGGCTGCTGCACACTAGCAATCAG
taatttaagttttcaagtgttaattaattgtcttgggatctttaatttga
ttcaggtaactctcatccttgttgttgcaaataNgaccaaacaaatgact
gaactcaaaaggtactatgatgtagtttctaacctgatgtgtaacctaat
tgttttttcgctgattttcgcgaaaaaccgcaaaaactggttatcacgtc
ataatcgatgacgtcactaaaactaaaaattgaatttctcaagaatggtt
tatcaaattgtcttcaaactttcaccaaatatgtatcttactaaagtcaa
tcatttgaaaaaaaaattctttcgaaattttgatgacatcagcagaaatt
agtaaaaaacgaaaaatcctattttctgctgacatcatcaaaattttgaa
aaattatattgttcaaataATCGATGTTAGTAaaatacatctttggtgaa
agtttgaagacaattggataaaccattcttgagaaattcaatttttagtt
ttagtgacgtcatcgattattacgtaataatcagtttttgcggtttttcg
cgaaaatcagcgaaaaaacaattaggttgcACAttaggttagaaactaca
tcatagtacccttcatgttcagtcatttgtttggtcattttctgtcgact
aatgcgatctaaaaattatggtaattttaagacatgccataacttacccg
agtgtGTGGAATTAGTTTTACTTAAGAGAGTAATCTAGGCCTTGAGAAAT
CGAAGTGCTATCTTGGGAATtaaataacaaattttggttggtttatTAGC
TGGCTGCTGCACACTAGCAATCAGtaatttaagttttcaagtgttaatta
attgtcttgggatcttgaatttgattcaggtaactctcgtccttgttgtt
gcaaatacaacCATGATGTTGTTATTTTTGAAACCTTGAGATCCCTGTGT
GACTAACTGTAAGGGATTTTATTCAGTGCAatgcaaatttttcttttcaa
aagactttcacaatctaatttttttctcattgttTCATTCAGGGCCTGAA
AGCAACAAAGCTTCTGCCACCTGTTGAACTCTCCTGGGACAAAGCCTACG
CTGGAATTAGCTGATATTTGCTAAGCTAACAGTAAGAAAGTTTGGTTATT
TTAATATCTCTTTTCatttaccttggaaaatttttttattctccTAGTAT
CTCAAAAAACATGCTTAAATGATTCTTTTTCTCACGTTTGTAGCAAGAAC
TACTGAGCCAAAATGAAGCAAGTAAAGCTACATACAGGATCAGTAATTGA
CGTCTGTGATGACGAATTGAATCTGACAGATTACATTCACACCAAACTGA
ACTCAGCAGGGCGAGAAGATAAAGATGATCCCTTTTTTGTCTGTGATCTT
GGTGATATTGTCAAGAAATGGAGACGATTCCAAAGAGTACTTCCAATGGT
CAAACcttattttggtaatttttttacatgttttCCTATGGTTCTCTTTT
TGATGACAAAATTTACTTCACACTATAtaattctttttctaaaattctGG
TCTCAATACTATATACCTTCATCATTTCTAAATTGTGTTTtagttttgaa
ttaaaattgcATACAAATTGTTCTAATCATTGTAGCCATGAAGTGCAACC
CAGACCTAGAGATCATTAAACTCATGATCAAATTAGGTTCAAACTTTGAT
TGTGCAAGCAAAATGGAGATCAAGACCTTACTTGATTTAGGGGTGGCTGC
TGATCGAATCATCTTTGCAAACCCCTGCAAACAAACATCATTTATCAAGT
AAGTGTTTATTATTAGCATGGCTTTAACTCCTTTCAAAGGAATTGGaaag
ggaaaatatttttagtcttTATTAAGGCTTAGGGNTTTTAACTCCTTTCA
AAGGGATtggaaaagagaaaatatttttagtcttTATTAAGGCTtaggga
cacgagaagttttttttgtgttgatgcaatgcaacatgcttcatctcacc
aacctgaaacgctttctcgtgtctccaccccattttcttttaataacatt
tgtgcttctctcacatttgtccctgggacaaaatcagcgtgtcttttggg
catttccctcactttttgtctcataaaacaaaaaaaagaaaccacaAGAC
ATGCTCTTTTTtccttgtgttggtgggatagagcatgttgcattgcacca
acgcgaaaaaaacttctggtgtccccaagcctttactcttattttttttg
aatttttatttattttcagataTTCAGCAGCAAATAATGTCAAATTGATG
ACTTTTGATAATGAAATGGAACTGCGAAAAGTTAAGCAATTTTATCCTGA
TGCAGAGCTTGTTCTTCGAATCAGAGTTGATGATTCAAAATCACTTTGCA
AGGTAAACTCATTCCATCTCTCTAGGGTTGATGCTTTAGTGcttttttgt
atatttatttttaagatattaTAATCAAATATTTCCATAATCAACTTATA
TTTCCAATTTTCTAGTTTGGAGTTAAGTTTGGGGCAGAACCTTGCAATAC
AATGCACCTTTTACAAACAGCCAAACAGCTTCACTTGAATGTTGTTGGTG
TTAGGTAAGTCTTTATGTCACCCATTTCAGATATCTGGTACCCTGCAACT
GCAAGCtattatgaaaaaatcatttgcaGATAGCTTGAATAATGATTTCA
AGGGTAGGATAAGATGTccaattttagcttgaaaattttgatttgcaaaa
tttgaagcAATCATCTTACTGTCCttgtaacattttcaaaaacgaaatgt
tttttattgatTAGTAAGAAATTGTACAGCATTTCGTATCAATAAGGAAA
ATATTTAAAGAAAActaaaactgatcaaaaagttAGCATCACCTGTAATA
ACATGCTCTGAAAGTGTGAATGTTTGAATTGATtccattgttttattttc
agctTTCATGTTGGAAGTGGTTGTTATGACGCCTCTTTGTTTTATGATGC
CGTCAAGTTGTCAAGGAAAGTCTTTGATGAAGGAGTAAGTGAAAAACAGA
AAACTTAATGATTCTGTACTTCTCCCTAATCGTTCTAAGCATTTTGAGCT
GATCAGCTTGTTTATTTCCAAAGCTGATCTACTTTTAATCTttcgatttt
cttttttagCGTGAAGTTGGATATCAATTTTCTATGTTAGATGTTGGTGG
TGGCTTCCCTGGAGATGATTTAGCTAAAGTCTCATTTGAAGAGGTATTTT
TAAGATTTCCTTTTAAATGAACAGATTTGACAAACCTGGTCCAGATCTAT
TTGACAATACTCgctatcaaataaaaataaatattcttaGTAGGAAATCC
TTGTTTATGTACTCAGAAATATTTGATAATAAGAGTGTTTGTATATTTCT
TTAGACTGCTGAAAAGTTGAAGGATGGTTTCAATGCGTTTTTCCCACCAG
AAATGAATGTGAAATTTATTGCAGAGCCTGGTCGATATTTTGTGGCATCT
GCATGTACAAACGTCTGCAACATCACTTCTGTTCGGAAGTTAGAATCAGG
TAATGAAAGCAATTTCATGTACTACATCAATGACGGTGTTTATGGATCAT
TCAACTGTGTCATGTTTGATCATTACAACCCAACCGCAAATGCCCTTCAT
GTCACCGATGGACCTGTCTTCAAATGTAGTGTTTGGGGACCAACTTGTGA
TTCTCTGGATTGTATCTCCAAGTCTACACTTCTACCAAGGGTAAGTTTCt
taaaacattattttcttgTATGTGTTTAAGAATCTCATCAGTCAATGATA
CAGATATGTTCAGTAATCCCTTTTTAAAATCCTTTACATTGTCCCTTTAG
ATGAACATTGGCGATTGGATGTATTTCCAGAACATGGGAGCGTACACTAT
CGCGGCAGCATCTAAATTTAATGGCTTCAAACAACCCAAAGTCATTTATA
TGTGTCGTCGCAAATTTGCTGATACTGTCACTGCTGAATCAGTGAATATT
GACACCAAAATGGAATTGATATCTAAGAAAGTTTTACATCATCACCCTCA
AAGTGTTGTAAAAAGCGCTGCAGTAAACTGAATATATTGTCATGCAGTGC
CAAGTAGATTAAATATGAATATAGCCGT

Coding sequence (CDS) from alignment at sc0000007:1366046..1373423+

>TCONS_00001073 ID=TCONS_00001073|Name=TCONS_00001073|organism=Clytia hemisphaerica|type=CDS|length=10560bp|location=Sequence derived from alignment at sc0000007:1366046..1373423+ (Clytia hemisphaerica)
ATGAAGCAAGTAAAGCTACATACAGGATCAGTAATTGACGTCTGTGATGA
CGAATTGAATCTGACAGATTACATTCACACCAAACTGAACTCAGCAGGGC
GAGAAGATAAAGATGATCCCTTTTTTGTCTGTGATCTTGGTGATATTGTC
AAGAAATGGAGACGATTCCAAAGAGTACTTCCAATGGTCAAACcttattt
tgCCATGAAGTGCAACCCAGACCTAGAGATCATTAAACTCATGATCAAAT
TAGGTTCAAACTTTGATTGTGCAAGCAAAATGGAGATCAAGACCTTACTT
GATTTAGGGGTGGCTGCTGATCGAATCATCTTTGCAAACCCCTGCAAACA
AACATCATTTATCAAataTTCAGCAGCAAATAATGTCAAATTGATGACTT
TTGATAATGAAATGGAACTGCGAAAAGTTAAGCAATTTTATCCTGATGCA
GAGCTTGTTCTTCGAATCAGAGTTGATGATTCAAAATCACTTTGCAAGTT
TGGAGTTAAGTTTGGGGCAGAACCTTGCAATACAATGCACCTTTTACAAA
CAGCCAAACAGCTTCACTTGAATGTTGTTGGTGTTAGctTTCATGTTGGA
AGTGGTTGTTATGACGCCTCTTTGTTTTATGATGCCGTCAAGTTGTCAAG
GAAAGTCTTTGATGAAGGACGTGAAGTTGGATATCAATTTTCTATGTTAG
ATGTTGGTGGTGGCTTCCCTGGAGATGATTTAGCTAAAGTCTCATTTGAA
GAGACTGCTGAAAAGTTGAAGGATGGTTTCAATGCGTTTTTCCCACCAGA
AATGAATGTGAAATTTATTGCAGAGCCTGGTCGATATTTTGTGGCATCTG
CATGTACAAACGTCTGCAACATCACTTCTGTTCGGAAGTTAGAATCAGGT
AATGAAAGCAATTTCATGTACTACATCAATGACGGTGTTTATGGATCATT
CAACTGTGTCATGTTTGATCATTACAACCCAACCGCAAATGCCCTTCATG
TCACCGATGGACCTGTCTTCAAATGTAGTGTTTGGGGACCAACTTGTGAT
TCTCTGGATTGTATCTCCAAGTCTACACTTCTACCAAGGATGAACATTGG
CGATTGGATGTATTTCCAGAACATGGGAGCGTACACTATCGCGGCAGCAT
CTAAATTTAATGGCTTCAAACAACCCAAAGTCATTTATATGTGTCGTCGC
AAATTTGCTGATACTGTCACTGCTGAATCAGTGAATATTGACACCAAAAT
GGAATTGATATCTAAGAAAGTTTTACATCATCACCCTCAAAGTGTTGTAA
AAAGCGCTGCAGTAAACTGAATGAAGCAAGTAAAGCTACATACAGGATCA
GTAATTGACGTCTGTGATGACGAATTGAATCTGACAGATTACATTCACAC
CAAACTGAACTCAGCAGGGCGAGAAGATAAAGATGATCCCTTTTTTGTCT
GTGATCTTGGTGATATTGTCAAGAAATGGAGACGATTCCAAAGAGTACTT
CCAATGGTCAAACcttattttgCCATGAAGTGCAACCCAGACCTAGAGAT
CATTAAACTCATGATCAAATTAGGTTCAAACTTTGATTGTGCAAGCAAAA
TGGAGATCAAGACCTTACTTGATTTAGGGGTGGCTGCTGATCGAATCATC
TTTGCAAACCCCTGCAAACAAACATCATTTATCAAataTTCAGCAGCAAA
TAATGTCAAATTGATGACTTTTGATAATGAAATGGAACTGCGAAAAGTTA
AGCAATTTTATCCTGATGCAGAGCTTGTTCTTCGAATCAGAGTTGATGAT
TCAAAATCACTTTGCAAGTTTGGAGTTAAGTTTGGGGCAGAACCTTGCAA
TACAATGCACCTTTTACAAACAGCCAAACAGCTTCACTTGAATGTTGTTG
GTGTTAGctTTCATGTTGGAAGTGGTTGTTATGACGCCTCTTTGTTTTAT
GATGCCGTCAAGTTGTCAAGGAAAGTCTTTGATGAAGGACGTGAAGTTGG
ATATCAATTTTCTATGTTAGATGTTGGTGGTGGCTTCCCTGGAGATGATT
TAGCTAAAGTCTCATTTGAAGAGACTGCTGAAAAGTTGAAGGATGGTTTC
AATGCGTTTTTCCCACCAGAAATGAATGTGAAATTTATTGCAGAGCCTGG
TCGATATTTTGTGGCATCTGCATGTACAAACGTCTGCAACATCACTTCTG
TTCGGAAGTTAGAATCAGGTAATGAAAGCAATTTCATGTACTACATCAAT
GACGGTGTTTATGGATCATTCAACTGTGTCATGTTTGATCATTACAACCC
AACCGCAAATGCCCTTCATGTCACCGATGGACCTGTCTTCAAATGTAGTG
TTTGGGGACCAACTTGTGATTCTCTGGATTGTATCTCCAAGTCTACACTT
CTACCAAGGATGAACATTGGCGATTGGATGTATTTCCAGAACATGGGAGC
GTACACTATCGCGGCAGCATCTAAATTTAATGGCTTCAAACAACCCAAAG
TCATTTATATGTGTCGTCGCAAATTTGCTGATACTGTCACTGCTGAATCA
GTGAATATTGACACCAAAATGGAATTGATATCTAAGAAAGTTTTACATCA
TCACCCTCAAAGTGTTGTAAAAAGCGCTGCAGTAAACTGAATGAAGCAAG
TAAAGCTACATACAGGATCAGTAATTGACGTCTGTGATGACGAATTGAAT
CTGACAGATTACATTCACACCAAACTGAACTCAGCAGGGCGAGAAGATAA
AGATGATCCCTTTTTTGTCTGTGATCTTGGTGATATTGTCAAGAAATGGA
GACGATTCCAAAGAGTACTTCCAATGGTCAAACcttattttgCCATGAAG
TGCAACCCAGACCTAGAGATCATTAAACTCATGATCAAATTAGGTTCAAA
CTTTGATTGTGCAAGCAAAATGGAGATCAAGACCTTACTTGATTTAGGGG
TGGCTGCTGATCGAATCATCTTTGCAAACCCCTGCAAACAAACATCATTT
ATCAAataTTCAGCAGCAAATAATGTCAAATTGATGACTTTTGATAATGA
AATGGAACTGCGAAAAGTTAAGCAATTTTATCCTGATGCAGAGCTTGTTC
TTCGAATCAGAGTTGATGATTCAAAATCACTTTGCAAGTTTGGAGTTAAG
TTTGGGGCAGAACCTTGCAATACAATGCACCTTTTACAAACAGCCAAACA
GCTTCACTTGAATGTTGTTGGTGTTAGctTTCATGTTGGAAGTGGTTGTT
ATGACGCCTCTTTGTTTTATGATGCCGTCAAGTTGTCAAGGAAAGTCTTT
GATGAAGGACGTGAAGTTGGATATCAATTTTCTATGTTAGATGTTGGTGG
TGGCTTCCCTGGAGATGATTTAGCTAAAGTCTCATTTGAAGAGACTGCTG
AAAAGTTGAAGGATGGTTTCAATGCGTTTTTCCCACCAGAAATGAATGTG
AAATTTATTGCAGAGCCTGGTCGATATTTTGTGGCATCTGCATGTACAAA
CGTCTGCAACATCACTTCTGTTCGGAAGTTAGAATCAGGTAATGAAAGCA
ATTTCATGTACTACATCAATGACGGTGTTTATGGATCATTCAACTGTGTC
ATGTTTGATCATTACAACCCAACCGCAAATGCCCTTCATGTCACCGATGG
ACCTGTCTTCAAATGTAGTGTTTGGGGACCAACTTGTGATTCTCTGGATT
GTATCTCCAAGTCTACACTTCTACCAAGGATGAACATTGGCGATTGGATG
TATTTCCAGAACATGGGAGCGTACACTATCGCGGCAGCATCTAAATTTAA
TGGCTTCAAACAACCCAAAGTCATTTATATGTGTCGTCGCAAATTTGCTG
ATACTGTCACTGCTGAATCAGTGAATATTGACACCAAAATGGAATTGATA
TCTAAGAAAGTTTTACATCATCACCCTCAAAGTGTTGTAAAAAGCGCTGC
AGTAAACTGAATGAAGCAAGTAAAGCTACATACAGGATCAGTAATTGACG
TCTGTGATGACGAATTGAATCTGACAGATTACATTCACACCAAACTGAAC
TCAGCAGGGCGAGAAGATAAAGATGATCCCTTTTTTGTCTGTGATCTTGG
TGATATTGTCAAGAAATGGAGACGATTCCAAAGAGTACTTCCAATGGTCA
AACcttattttgCCATGAAGTGCAACCCAGACCTAGAGATCATTAAACTC
ATGATCAAATTAGGTTCAAACTTTGATTGTGCAAGCAAAATGGAGATCAA
GACCTTACTTGATTTAGGGGTGGCTGCTGATCGAATCATCTTTGCAAACC
CCTGCAAACAAACATCATTTATCAAataTTCAGCAGCAAATAATGTCAAA
TTGATGACTTTTGATAATGAAATGGAACTGCGAAAAGTTAAGCAATTTTA
TCCTGATGCAGAGCTTGTTCTTCGAATCAGAGTTGATGATTCAAAATCAC
TTTGCAAGTTTGGAGTTAAGTTTGGGGCAGAACCTTGCAATACAATGCAC
CTTTTACAAACAGCCAAACAGCTTCACTTGAATGTTGTTGGTGTTAGctT
TCATGTTGGAAGTGGTTGTTATGACGCCTCTTTGTTTTATGATGCCGTCA
AGTTGTCAAGGAAAGTCTTTGATGAAGGACGTGAAGTTGGATATCAATTT
TCTATGTTAGATGTTGGTGGTGGCTTCCCTGGAGATGATTTAGCTAAAGT
CTCATTTGAAGAGACTGCTGAAAAGTTGAAGGATGGTTTCAATGCGTTTT
TCCCACCAGAAATGAATGTGAAATTTATTGCAGAGCCTGGTCGATATTTT
GTGGCATCTGCATGTACAAACGTCTGCAACATCACTTCTGTTCGGAAGTT
AGAATCAGGTAATGAAAGCAATTTCATGTACTACATCAATGACGGTGTTT
ATGGATCATTCAACTGTGTCATGTTTGATCATTACAACCCAACCGCAAAT
GCCCTTCATGTCACCGATGGACCTGTCTTCAAATGTAGTGTTTGGGGACC
AACTTGTGATTCTCTGGATTGTATCTCCAAGTCTACACTTCTACCAAGGA
TGAACATTGGCGATTGGATGTATTTCCAGAACATGGGAGCGTACACTATC
GCGGCAGCATCTAAATTTAATGGCTTCAAACAACCCAAAGTCATTTATAT
GTGTCGTCGCAAATTTGCTGATACTGTCACTGCTGAATCAGTGAATATTG
ACACCAAAATGGAATTGATATCTAAGAAAGTTTTACATCATCACCCTCAA
AGTGTTGTAAAAAGCGCTGCAGTAAACTGAATGAAGCAAGTAAAGCTACA
TACAGGATCAGTAATTGACGTCTGTGATGACGAATTGAATCTGACAGATT
ACATTCACACCAAACTGAACTCAGCAGGGCGAGAAGATAAAGATGATCCC
TTTTTTGTCTGTGATCTTGGTGATATTGTCAAGAAATGGAGACGATTCCA
AAGAGTACTTCCAATGGTCAAACcttattttgCCATGAAGTGCAACCCAG
ACCTAGAGATCATTAAACTCATGATCAAATTAGGTTCAAACTTTGATTGT
GCAAGCAAAATGGAGATCAAGACCTTACTTGATTTAGGGGTGGCTGCTGA
TCGAATCATCTTTGCAAACCCCTGCAAACAAACATCATTTATCAAataTT
CAGCAGCAAATAATGTCAAATTGATGACTTTTGATAATGAAATGGAACTG
CGAAAAGTTAAGCAATTTTATCCTGATGCAGAGCTTGTTCTTCGAATCAG
AGTTGATGATTCAAAATCACTTTGCAAGTTTGGAGTTAAGTTTGGGGCAG
AACCTTGCAATACAATGCACCTTTTACAAACAGCCAAACAGCTTCACTTG
AATGTTGTTGGTGTTAGctTTCATGTTGGAAGTGGTTGTTATGACGCCTC
TTTGTTTTATGATGCCGTCAAGTTGTCAAGGAAAGTCTTTGATGAAGGAC
GTGAAGTTGGATATCAATTTTCTATGTTAGATGTTGGTGGTGGCTTCCCT
GGAGATGATTTAGCTAAAGTCTCATTTGAAGAGACTGCTGAAAAGTTGAA
GGATGGTTTCAATGCGTTTTTCCCACCAGAAATGAATGTGAAATTTATTG
CAGAGCCTGGTCGATATTTTGTGGCATCTGCATGTACAAACGTCTGCAAC
ATCACTTCTGTTCGGAAGTTAGAATCAGGTAATGAAAGCAATTTCATGTA
CTACATCAATGACGGTGTTTATGGATCATTCAACTGTGTCATGTTTGATC
ATTACAACCCAACCGCAAATGCCCTTCATGTCACCGATGGACCTGTCTTC
AAATGTAGTGTTTGGGGACCAACTTGTGATTCTCTGGATTGTATCTCCAA
GTCTACACTTCTACCAAGGATGAACATTGGCGATTGGATGTATTTCCAGA
ACATGGGAGCGTACACTATCGCGGCAGCATCTAAATTTAATGGCTTCAAA
CAACCCAAAGTCATTTATATGTGTCGTCGCAAATTTGCTGATACTGTCAC
TGCTGAATCAGTGAATATTGACACCAAAATGGAATTGATATCTAAGAAAG
TTTTACATCATCACCCTCAAAGTGTTGTAAAAAGCGCTGCAGTAAACTGA
ATGAAGCAAGTAAAGCTACATACAGGATCAGTAATTGACGTCTGTGATGA
CGAATTGAATCTGACAGATTACATTCACACCAAACTGAACTCAGCAGGGC
GAGAAGATAAAGATGATCCCTTTTTTGTCTGTGATCTTGGTGATATTGTC
AAGAAATGGAGACGATTCCAAAGAGTACTTCCAATGGTCAAACcttattt
tgCCATGAAGTGCAACCCAGACCTAGAGATCATTAAACTCATGATCAAAT
TAGGTTCAAACTTTGATTGTGCAAGCAAAATGGAGATCAAGACCTTACTT
GATTTAGGGGTGGCTGCTGATCGAATCATCTTTGCAAACCCCTGCAAACA
AACATCATTTATCAAataTTCAGCAGCAAATAATGTCAAATTGATGACTT
TTGATAATGAAATGGAACTGCGAAAAGTTAAGCAATTTTATCCTGATGCA
GAGCTTGTTCTTCGAATCAGAGTTGATGATTCAAAATCACTTTGCAAGTT
TGGAGTTAAGTTTGGGGCAGAACCTTGCAATACAATGCACCTTTTACAAA
CAGCCAAACAGCTTCACTTGAATGTTGTTGGTGTTAGctTTCATGTTGGA
AGTGGTTGTTATGACGCCTCTTTGTTTTATGATGCCGTCAAGTTGTCAAG
GAAAGTCTTTGATGAAGGACGTGAAGTTGGATATCAATTTTCTATGTTAG
ATGTTGGTGGTGGCTTCCCTGGAGATGATTTAGCTAAAGTCTCATTTGAA
GAGACTGCTGAAAAGTTGAAGGATGGTTTCAATGCGTTTTTCCCACCAGA
AATGAATGTGAAATTTATTGCAGAGCCTGGTCGATATTTTGTGGCATCTG
CATGTACAAACGTCTGCAACATCACTTCTGTTCGGAAGTTAGAATCAGGT
AATGAAAGCAATTTCATGTACTACATCAATGACGGTGTTTATGGATCATT
CAACTGTGTCATGTTTGATCATTACAACCCAACCGCAAATGCCCTTCATG
TCACCGATGGACCTGTCTTCAAATGTAGTGTTTGGGGACCAACTTGTGAT
TCTCTGGATTGTATCTCCAAGTCTACACTTCTACCAAGGATGAACATTGG
CGATTGGATGTATTTCCAGAACATGGGAGCGTACACTATCGCGGCAGCAT
CTAAATTTAATGGCTTCAAACAACCCAAAGTCATTTATATGTGTCGTCGC
AAATTTGCTGATACTGTCACTGCTGAATCAGTGAATATTGACACCAAAAT
GGAATTGATATCTAAGAAAGTTTTACATCATCACCCTCAAAGTGTTGTAA
AAAGCGCTGCAGTAAACTGAATGAAGCAAGTAAAGCTACATACAGGATCA
GTAATTGACGTCTGTGATGACGAATTGAATCTGACAGATTACATTCACAC
CAAACTGAACTCAGCAGGGCGAGAAGATAAAGATGATCCCTTTTTTGTCT
GTGATCTTGGTGATATTGTCAAGAAATGGAGACGATTCCAAAGAGTACTT
CCAATGGTCAAACcttattttgCCATGAAGTGCAACCCAGACCTAGAGAT
CATTAAACTCATGATCAAATTAGGTTCAAACTTTGATTGTGCAAGCAAAA
TGGAGATCAAGACCTTACTTGATTTAGGGGTGGCTGCTGATCGAATCATC
TTTGCAAACCCCTGCAAACAAACATCATTTATCAAataTTCAGCAGCAAA
TAATGTCAAATTGATGACTTTTGATAATGAAATGGAACTGCGAAAAGTTA
AGCAATTTTATCCTGATGCAGAGCTTGTTCTTCGAATCAGAGTTGATGAT
TCAAAATCACTTTGCAAGTTTGGAGTTAAGTTTGGGGCAGAACCTTGCAA
TACAATGCACCTTTTACAAACAGCCAAACAGCTTCACTTGAATGTTGTTG
GTGTTAGctTTCATGTTGGAAGTGGTTGTTATGACGCCTCTTTGTTTTAT
GATGCCGTCAAGTTGTCAAGGAAAGTCTTTGATGAAGGACGTGAAGTTGG
ATATCAATTTTCTATGTTAGATGTTGGTGGTGGCTTCCCTGGAGATGATT
TAGCTAAAGTCTCATTTGAAGAGACTGCTGAAAAGTTGAAGGATGGTTTC
AATGCGTTTTTCCCACCAGAAATGAATGTGAAATTTATTGCAGAGCCTGG
TCGATATTTTGTGGCATCTGCATGTACAAACGTCTGCAACATCACTTCTG
TTCGGAAGTTAGAATCAGGTAATGAAAGCAATTTCATGTACTACATCAAT
GACGGTGTTTATGGATCATTCAACTGTGTCATGTTTGATCATTACAACCC
AACCGCAAATGCCCTTCATGTCACCGATGGACCTGTCTTCAAATGTAGTG
TTTGGGGACCAACTTGTGATTCTCTGGATTGTATCTCCAAGTCTACACTT
CTACCAAGGATGAACATTGGCGATTGGATGTATTTCCAGAACATGGGAGC
GTACACTATCGCGGCAGCATCTAAATTTAATGGCTTCAAACAACCCAAAG
TCATTTATATGTGTCGTCGCAAATTTGCTGATACTGTCACTGCTGAATCA
GTGAATATTGACACCAAAATGGAATTGATATCTAAGAAAGTTTTACATCA
TCACCCTCAAAGTGTTGTAAAAAGCGCTGCAGTAAACTGAATGAAGCAAG
TAAAGCTACATACAGGATCAGTAATTGACGTCTGTGATGACGAATTGAAT
CTGACAGATTACATTCACACCAAACTGAACTCAGCAGGGCGAGAAGATAA
AGATGATCCCTTTTTTGTCTGTGATCTTGGTGATATTGTCAAGAAATGGA
GACGATTCCAAAGAGTACTTCCAATGGTCAAACcttattttgCCATGAAG
TGCAACCCAGACCTAGAGATCATTAAACTCATGATCAAATTAGGTTCAAA
CTTTGATTGTGCAAGCAAAATGGAGATCAAGACCTTACTTGATTTAGGGG
TGGCTGCTGATCGAATCATCTTTGCAAACCCCTGCAAACAAACATCATTT
ATCAAataTTCAGCAGCAAATAATGTCAAATTGATGACTTTTGATAATGA
AATGGAACTGCGAAAAGTTAAGCAATTTTATCCTGATGCAGAGCTTGTTC
TTCGAATCAGAGTTGATGATTCAAAATCACTTTGCAAGTTTGGAGTTAAG
TTTGGGGCAGAACCTTGCAATACAATGCACCTTTTACAAACAGCCAAACA
GCTTCACTTGAATGTTGTTGGTGTTAGctTTCATGTTGGAAGTGGTTGTT
ATGACGCCTCTTTGTTTTATGATGCCGTCAAGTTGTCAAGGAAAGTCTTT
GATGAAGGACGTGAAGTTGGATATCAATTTTCTATGTTAGATGTTGGTGG
TGGCTTCCCTGGAGATGATTTAGCTAAAGTCTCATTTGAAGAGACTGCTG
AAAAGTTGAAGGATGGTTTCAATGCGTTTTTCCCACCAGAAATGAATGTG
AAATTTATTGCAGAGCCTGGTCGATATTTTGTGGCATCTGCATGTACAAA
CGTCTGCAACATCACTTCTGTTCGGAAGTTAGAATCAGGTAATGAAAGCA
ATTTCATGTACTACATCAATGACGGTGTTTATGGATCATTCAACTGTGTC
ATGTTTGATCATTACAACCCAACCGCAAATGCCCTTCATGTCACCGATGG
ACCTGTCTTCAAATGTAGTGTTTGGGGACCAACTTGTGATTCTCTGGATT
GTATCTCCAAGTCTACACTTCTACCAAGGATGAACATTGGCGATTGGATG
TATTTCCAGAACATGGGAGCGTACACTATCGCGGCAGCATCTAAATTTAA
TGGCTTCAAACAACCCAAAGTCATTTATATGTGTCGTCGCAAATTTGCTG
ATACTGTCACTGCTGAATCAGTGAATATTGACACCAAAATGGAATTGATA
TCTAAGAAAGTTTTACATCATCACCCTCAAAGTGTTGTAAAAAGCGCTGC
AGTAAACTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000606	XLOC_000606	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001073-protein	TCONS_00001073-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000007	supercontig	sc0000007:1366046..1373423 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0258	9.411	7.64329	7.06233	81.83	65.7022	83.6707	87.0283	114.045	89.382	81.4369	105.685	166.247	144.709	69.0254	75.6441	152.253	128.776	83.0816	89.5532	165.998	171.38	96.1769	112.693	53.0158	53.4245	121.086	89.1999	357.534	203.905

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002433	Orn_de-COase
IPR000183	Orn/DAP/Arg_de-COase
IPR029066	PLP-binding_barrel
IPR009006	Ala_racemase/Decarboxylase_C
IPR022644	De-COase2_N
IPR022643	De-COase2_C
IPR022653	De-COase2_pyr-phos_BS

Vocabulary: **Biological Process**
Term	Definition
GO:0006596	polyamine biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006596	polyamine biosynthetic process
molecular_function	GO:0003824	catalytic activity

Blast

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BLAST of TCONS_00001073 vs. Swiss-Prot (Human)
Match: DCOR (Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE=1 SV=2)

HSP 1 Score: 394.43 bits (1012), Expect = 2.857e-131
Identity = 193/394 (48.98%), Postives = 260/394 (65.99%), Query Frame = 1

Query:  307 DDELNLTDYIHTKLNSAGREDKDDPFFVCDLGDIVKKWRRFQRVLPMVKPYFAMKCNPDLEIIKLMIKLGSNFDCASKMEIKTLLDLGVAADRIIFANPCKQTSFIKYSAANNVKLMTFDNEMELRKVKQFYPDAELVLRIRVDDSKSLCKFGVKFGAEPCNTMHLLQTAKQLHLNVVGVSFHVGSGCYDASLFYDAVKLSRKVFDEGREVGYQFSMLDVGGGFPGDDLAKVSFEETAEKLKDGFNAFFPPEMNVKFIAEPGRYFVASACTNVCNITS---VRKLESG-------NESNFMYYINDGVYGSFNCVMFDHYN--PTANALHVTDGPVFKCSVWGPTCDSLDCISKSTLLPRMNIGDWMYFQNMGAYTIAAASKFNGFKQPKVIYM 1452
            D+     D +  K+N     D  D F+V DLGDI+KK  R+ + LP V P++A+KCN    I+K +   G+ FDCASK EI+ +  LGV  +RII+ANPCKQ S IKY+A N V++MTFD+E+EL KV + +P A+LVLRI  DDSK++C+  VKFGA    +  LL+ AK+L+++VVGVSFHVGSGC D   F  A+  +R VFD G EVG+   +LD+GGGFPG +  K+ FEE    +    + +FP +  V+ IAEPGRY+VASA T   NI +   V K ++G       +E  FMYY+NDGVYGSFNC+++DH +  P        D   +  S+WGPTCD LD I +   LP M++GDWM F+NMGAYT+AAAS FNGF++P + Y+
Sbjct:   15 DEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYV 408

The following BLAST results are available for this feature:

BLAST of TCONS_00001073 vs. Swiss-Prot (Human)

BLAST of TCONS_00001073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DCOR	2.857e-131	48.98	Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE...	[more]

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TCONS_00001073 (transcript) - C. hemisphaerica