Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001057 ID=TCONS_00001057|Name=TCONS_00001057|organism=Clytia hemisphaerica|type=transcript|length=1159bpRun BLAST on NCBI transcript from alignment at sc0000007:1109758..1116755+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001057 ID=TCONS_00001057|Name=TCONS_00001057|organism=Clytia hemisphaerica|type=transcript|length=6998bp|location=Sequence derived from alignment at sc0000007:1109758..1116755+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00001057 vs. Swiss-Prot (Human)
Match: RNH1 (Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 1.019e-44 Identity = 100/238 (42.02%), Postives = 134/238 (56.30%), Query Frame = 2 Query: 38 ECESQVKGFHGARYKKFGSEQEAQSFI-----DEVSSSNSSLGVRRTQTFKAKSQNTAFPG----SVTALSKRTKL-IEARXXXXXXXXXXXXXKPVVYTDGCCXXXXXXXXXXXXXVYWGPDHPRNISEPLLVDEPTNQKAELEAAIRAIDCAIGMGLDDLELRTDSTYTIKSMTEWIPRWERNGWKTSKGTDVLNKEQMIRLNDLCKRIDIKWTHVRGHKGIHGNEEADRLANEGA 721 EC +QV F AR+KKF +E EA +F+ EVS + + + ++ +K G S +K K +E ++ + S VVYTDGCC NGR GIGVYWGP HP N+ L TNQ+AE+ AA +AI+ A ++ L L TDS +TI +T W+ W++NGWKTS G +V+NKE + L L + +DI+W HV GH G GNEEADRLA EGA Sbjct: 45 ECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVG-IRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGA 281 The following BLAST results are available for this feature:
BLAST of TCONS_00001057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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