|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001028 ID=TCONS_00001028|Name=TCONS_00001028|organism=Clytia hemisphaerica|type=transcript|length=2496bpRun BLAST on NCBI transcript from alignment at sc0000007:790173..810107+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001028 ID=TCONS_00001028|Name=TCONS_00001028|organism=Clytia hemisphaerica|type=transcript|length=19935bp|location=Sequence derived from alignment at sc0000007:790173..810107+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001028 vs. Swiss-Prot (Human)
Match: ARAF (Serine/threonine-protein kinase A-Raf OS=Homo sapiens GN=ARAF PE=1 SV=2) HSP 1 Score: 478.404 bits (1230), Expect = 5.672e-158 Identity = 267/590 (45.25%), Postives = 356/590 (60.34%), Query Frame = 2
Query: 833 SNGNSPHSSLRAHIRAFLPNNQRTMIKYKLGQTVREALYKAMSRRSLTTDSYRVYN--KANRELIAWDSDVSLLDGAEVIVEMIDEEDPSTQNISHNFVRKTFFRLAFCDKCTKLLITGFRCTTCNYRFHQKCAQGIPPLC-----------------------EQAEHSQIYKRLLAKQXXXXXXXX--------XXXXXXISQRERSISAPNVNMIGQPDSGLIEAVLEKHYKNRTNQETATISGGLTRQMSSGPSSGRGRITNTLFTPTSVSAPNSGENYFDFNTANSLPAPGNSKAQQISGIPDSLIHPARDRKNRIRSSSEEHKKPRR---RDSNDDWEIYADDLKIGERIGSGSYGTVYKGYWHGTVAVKTLNVKDPNPQQLLAFQNEVGVLRKTRHVNVLLFMGCLSSPNLAIVTQWCEGSSLYRHLHVLEKKFPMHNLIEIARQTAQGIDYLHAKQIIHRDLKSNNIFLQQDLTVKIGDFGLATVKTRWSGDHGCEQPSGSILWMAPEVIKMQDPNPYTFFSDAYAFGICIYELITGSLPYCNIGNKDILIYRIGRGFIRPDQSKIRSDCPKALKRLYLDCI 2494
+NG P ++ ++ +LPN QRT++ + G +V ++L KA+ R L D VY K + + AWD+ ++ LDG E+IVE++ E+ P T HNFVRKTFF LAFCD C K L GFRC TC Y+FHQ C+ +P +C +A ++ LL Q P+ T P+ QR RS S PNV+M+ A ++ + T Q +T + G S G S G R + + P SVS+ + S A+Q R+RK S +++ KK + RDS WE+ ++++ +RIG+GS+GTV++G WHG VAVK L V P +Q AF+NE+ VLRKTRHVN+LLFMG ++ P AI+TQWCEGSSLY HLHV + +F M LI++ARQTAQG+DYLHAK IIHRDLKSNNIFL + LTVKIGDFGLATVKTRWSG EQPSGS+LWMA EVI+MQDPNPY+F SD YA+G+ +YEL+TGSLPY +IG +D +I+ +GRG++ PD SKI S+CPKA++RL DC+
Sbjct: 9 ANGAEPSRAV-GTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAWDTAIAPLDGEELIVEVL-EDVPLTM---HNFVRKTFFSLAFCDFCLKFLFHGFRCQTCGYKFHQHCSSKVPTVCVDMSTNRQQFYHSVQDLSGGSRQHEAPSNRPLNELLTPQGPSPRTQHCDPEHFPFPAPANAPLQRIRSTSTPNVHMVS------TTAPMDSNLIQLTGQSFSTDAAG-----SRGGSDGTPRGSPS---PASVSSGRKSPH-------------SKSPAEQ------------RERK----SLADDKKKVKNLGYRDSGYYWEVPPSEVQLLKRIGTGSFGTVFRGRWHGDVAVKVLKVSQPTAEQAQAFKNEMQVLRKTRHVNILLFMGFMTRPGFAIITQWCEGSSLYHHLHVADTRFDMVQLIDVARQTAQGMDYLHAKNIIHRDLKSNNIFLHEGLTVKIGDFGLATVKTRWSGAQPLEQPSGSVLWMAAEVIRMQDPNPYSFQSDVYAYGVVLYELMTGSLPYSHIGCRDQIIFMVGRGYLSPDLSKISSNCPKAMRRLLSDCL 550 The following BLAST results are available for this feature:
BLAST of TCONS_00001028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.