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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001017 ID=TCONS_00001017|Name=TCONS_00001017|organism=Clytia hemisphaerica|type=transcript|length=2946bp
aatagctcatgaaaaaaaataaaagcagTCTATCATGCTGTGAACTGTGT
ACAAGAAAAGACACCAACATGTTGCTATAAAACATAAAGACAGTGAATCT
TGAGATAAATCATTGACTGTGACTGATACAACACAATACACATATACACC
AATCAATATATCTTGGACATTCACTTTAACCAAACCATATAATCTTCATC
ATGGGCCAAAAATACTCGGTTATAAAGGATTTAACCAGGGAGGTTGAAAA
ATATGAAAGGGAAAAGCGTCAATATGAGAGGGAACAGGCATACAAGTCTG
GTGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGTTTCG
TCCATTCATCCTACTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCA
AGATGATACTGATGCACCTAAAGTAGACTCTCCTGTCGAAACTAGCACTC
CTGCACCGGAAAGTGATGAAGAGAGTGTCTCTGTTTTAACAGAAACTTAC
TCAGAAGATGTCAAGGAAGCCAGTATTGTTGCAGAACCAGCGGAAAGCAC
AACTGTGGTATTAGTTAGTGCTTCAAGTAGTGAAGCTGGCGAACCAGTAG
ATGACATTGATGAAGTACCAAAAGAGAAACCTGTATTACCACTCACACCT
GAATTACTGGCTGAACGAGAAGAATCTTCTGATGTTTCCCCAGCTGCTGA
TATGGAGGATCGCCCACCTGCATATGATTGCCTAGTTCAAAACACAGAAG
ATACACCACCTCAATCACCACACTATGTTAATCTTCAAACTCTATCTTCT
CAAAAAGAACTTGATGATATTCCAATTGAAACTGAACCGGTTTCAGATAC
AGAGGAAGATACAATCGAAGACCTCCCACCTCCACCAACTATTCCACCTC
CAGCAGCACCAATTCCTTCAACCATCCTTGAAGAAGAAGAACCTACTGAG
GAGCCTGCTCTTCCAGTTGTTGAAGAAGTTGTTCCAGTAGTGAAGGCTCC
TACAGAAGAGGCTGCCCCAGTCAGTGAGGAACAGGCTGCCCCAGTTGTTA
AGGAACAGGCTGCCCCAGTCATTGAGGAATTGGCTGCCCCAGTTGTTGAG
GAGCCAGCTGCTCTAATTGTCGAAGAGACAACCACCCCAGTTGTTGAGGA
GCCAGCTACCCCAGTCATTGAGGAGCCAGCTACTCCTGTCGTTGAGGAGC
TAGCTACTCCTGTCGTTGAGGAGCTAGCTACCCCAGTCATTGAGGAGCCA
GCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAAC
TACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAACTA
CCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACC
CCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAGCTACCCC
AGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAAGCAGCTACCCCAG
TTGTTGAGGAACCAGCTACCCCAGTTATTGAGGAGCCAGCCACCCCGGTT
ATTGAGGAGCCAGCCACCCCGGTTGTTGAGGAGCCAGCCACCCCGGTTGT
TGAGGAGCCAGCTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTCGTTG
AGGAGCCAGCTACCCCAGTTGTTGAGGAGCCAGCTACCCCAGTTGTTGAG
GAACCAACTACCCCAGTTGTTGAGGAGCCAGCTACCCCAGTCGTTGAGGA
GCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGC
CAACTACCCCAGTCGTTGAGGAACCAACTACCCCAGTCGTTGAGGAGCCA
ACTACCCCAGTTGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAAC
TACCCCAGTCGTTGAGGAGCCAGCTGCCCCAGTTGTCGAGGAAACATCTA
TTGAGGAAACAAGTCTTGATGAAGAACCAGCAGTTAATGATGAAAAAGAA
CCTGAAGTTGTTCTTCTGAAAGCTGAAGAAGTGGGGGATGCTGATGAACT
TCCTGTAATGAAAGTTGAGGAAGTCGGACAGTCTGATGAAGCAGCTGATA
AAACTGAGAACACTTTGTTAGATGCAACGAATGTTTCTCCAATGCCAGAA
CCGGAAGAGTTCGACGATAACCCTACATATTTCATAAAAGTTACTGAGGC
TAAATAAATCCAAACGAacatttttaagtatttttaaaGCTTTACTATGC
AAAATAGAAATTTCTAGTTTTATACAGAGTATATATTGATAACTTCTTTA
AAGTTTCAGGCCGTTTTTTGAATTTGGAATGTATGAGAAAGTTATCGGTA
GTTTtccttttcctgaatttttgtaacagagaattttcttttcatttgcc
ATTTTTCGTGAATCAGTTTTCGAGGTATTTGTAACAATGTTTTAGTATTT
GTTTTTATCCTTTGAACTTTGTCATGGTAGGATGTTTTTAACATACCGTA
TcagtaaattatttttttagtatCATGTATTTATTAGTATTTTCATGTTC
AGTTCCCTCGATTTTCGCTAGTAGTTttcattttaattctttttccgatg
gttttttttggtccttttttTCAACAACGCAGAGGCTTTATTGGAGTCGA
ACAGAATATCGTCTCTATGCGagttcttgaaatttttttcaattactCTA
ACCTTGACCCCGAAACGGGTTTTATCGAGGGTGAGTATTGTTTTACgttg
atttttttaaagttagtGATTCGCGAGAATTAGTCCTGTCGGTACAAAGG
GATTTACGTATATTTTACATACGAAGCTCATTTGTAATACGGTATTTTCA
GCTCATTTCTTTCAATTAATATAAAAATCATGATCAATTTTGTACATCTT
CGCCTATCGATCTCATTGTTGATATTGTTTTTCCAGATGATTCGAT Run BLAST on NCBI transcript from alignment at sc0000007:745612..751470+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001017 ID=TCONS_00001017|Name=TCONS_00001017|organism=Clytia hemisphaerica|type=transcript|length=5859bp|location=Sequence derived from alignment at sc0000007:745612..751470+ (Clytia hemisphaerica)
aatagctcatgaaaaaaaataaaagcagTCTATCATGCTGTGAACTGTGT
ACAAGAAAAGACACCAACATGTTGCTATAAAACATAAAGACAGTGAATCT
TGAGATAAATCATTGACTGTGACTGATACAACACAATACACATATACACC
AATCAATATATCTTGGACATTCACTTTAACCAAACCATATAATCTTCATC
ATGGGCCAAAAATACTCGGTTATAAAGGATTTAACCAGGGAGGTTGAAAA
ATATGAAAGGGAAAAGCGTCAATATGAGAGGGAACAGGTAAATGACCtat
gtttgaaaatttcaacatcaaaCTTCCAGACATTGGggtttttttattat
tcttaATATCATttcatatctttttaaatcATAGGTAATCTTATTATTGT
AGTATTGTGTGTTATGATTAaactttagaaatttttataaaagtaacTTT
ACTTTTATAAAAGGTGTTAATCTATAGATCTACATGTTCTTGTTTTACTT
TTGAGATTACACAACAAGACGCTTCCAaatgtattttgtttttattttat
tgtaatAGCTGtctgataaaaattgaaatttgacctGAATAGTGTTTGTT
CAGTGTGATAGCCAACTGAAACGACATCCTGTGTATTGTAATTTTCTTTA
AAGAGGCAATAAATCATAACTAAGTGGCTCCCCTTACTTTTAATTGATAG
TACTTAATGAACTGAATCATATGTATTTACCCTACCTATAATTAATACAA
TTTCTTTTGCTTATTCCGATTGATttaataaagagaaaaatacaaggaaa
acattttatttttactacAGGATGTCTCCAGTTAAGGAAACTCACCATGA
CACCACATTTCCTGCCGCAAAGCCAAATTGTTGATCAATATCGTTCTTGT
TTCCTTTAACCAATGCAAAATTTGTTTATATTACACTTTAGGCATACAAG
TCTGGTGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGT
TTCGGTTAGTTGCATAGTCAAAATTGaacaatttttaatttataaataTT
ACGATCACCATAAACGAGACAGCACTTCTAAAGCAATATAAAGggaaaat
aatagaaatttagaatataatttttttttctcattaaaaCATGACATTGC
TTCCAGTTATTTTCTGTCTGTTCTGCCAGATGCTTTCTACACAACTTTGC
ATGTTACATTTCATTAACTGATTCTCGTGAATTGATTTTTAGTCCATTCA
TCCTACTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATGATA
CTGATGCACCTAAAGTAGACTCTCCTGTCGAANCTTATTATTCTTAATAT
CATttcatatctttttaaatcATAGGTTATCTTATTATTGTAGTATTCTG
TAGTATTGTGTGTTATGATTAaactttagaaatttttataaaagtaacTT
TACTTTTATAAAAGGTGTTAATCTATAGATCTACATGTTCTTGTTTTACT
TTTGAGATTACACAACAAGACGCTTCCAaatgtattttgtttttatttta
ttgtaatAGCTGtctgataaaaattgaaatttgacctGAATAGTGTTTGT
TCAGTGTGATAGCCAACTGAAACGACATCCTGTGTATTGTAATTTTCTTT
AAAGAGGCAATAAATCATAACTAAGTGGCTCCCCTTACTTTTAATTGATA
GTACTTAATGAACTGAATCATATGTATTTACCCTACCTATAATTAATACA
ATTTCTTTTGCTTATTCCGATTGATttaataaagagaaaaatacaaggaa
aacattttatttttactacAGGATGTCTCCAGTTAAGGAAACTCACCATG
ACACCACATTTCCTGCCGCAAAGCCAAATTGTTGATCAATATCGTTCTTG
TTTCCTTTAACCAATGCAAAATTTGTTTATATTACACTTTAGGCATACAA
GTCTGGTGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATG
TTTCGGTTAGTTGCATAGTCAAAATTGaacaatttttaatttataaataT
TACGATCACCAAAAACGAGACAGCACTTTTAAAGCAATATAAAGggaaaa
taatagaaatttagaatataaattttttttctcattaaaaCATGACATGC
TTCCAGTTATTTTCTGTCTGTTCTGCCAGATGCTTTCTACACAACTTTGC
ATGTTACATTTCATTAACTGATTCTCGTGAATTGATTTTTAGTCCATTCA
TCCTACTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATGATA
CTGATGCACCTAAAGTAGACTCTCCTGTCGAAACTAGCACTCCTGCACCG
GAAAGTGATGAAGAGAGTGTCTCTGTTTTAACAGAAACTTACTCAGAAGA
TGTCAAGGAAGCCAGTATTGTTGCAGAACCAGCGGAAAGCACAACTGTGG
TATTAGTTAGTGCTTCAAGTAGTGAAGCTGGTGAACCAGTAGATGACATT
GATGAAGTACCAAAAGAGAAACCTGTATTACCACTCACACCTGAATTACT
GGCTGAACGAGAAGAATCTTCTGATGTTTCCCAAGCTGCTGATATGGAGG
ATCGCCCACCTGCATATGATTGCCTAGTTCAAAACACAGAAGATACACCA
CCTCAATCACCACACTATGTTAATCTTCAAACTCTATCTTCTCAAAAAGA
ACTTGATGATATTCCAATTGAAACTGAACCGGTTTCAGATACAGAGGAAG
ATACAATCGAAGACCTCCCACCTCCACCAACTATTCCACCTCCAGCAGCA
CCAATTCCTTCAACCATCCTTGAAGAAGAAGAACCTACTGAGGAGCCTGC
TCTTCCAGTTGTTGAAGAAGTTGTTCCAGTAGTAAAGGCTCCTACAGAAG
AGGCTGCCCCAGTCAGTGAGGAACAGGCTGCCCCAGTTGTTAAGGAACAG
GCTGCCCCAGTCATTGAGGAATTGGCTGCCCCAGTTGTTGAGGAGCCAGC
TGCTCTAATTGTCGAAGAGACAACCACCCCAGTTGTTGAGGAGCCAGCTA
CCCCAGTCATTGAGGAGCCAGGTACTCCTGTCGTTGAGGAGCTAGCTACT
CCTGTCGTTGAGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT
TCTCATTAAAACATGACATGCTTCCAGTTATTTTCTGTCTGTTCTGCCAG
ATGCTTTCTACACAACTTTGCATGTTACATTTCATTAACTGATTCTCGTG
AATTGATTTTTAGTCCATTCATCCTACTCAATCGTTGTATCCTGACCTCA
AAGAACTGGAGCAAGATGATACTGATGCACCTAAAGTAGACTCTCCTGTC
GAAACTAGCACTCCTGCACCGGAAAGTGATGAAGAGAGTGTCTCTGTTTT
AACAGAAACTTACTCAGAAGATGTCAAGGAAGCCAGTATTGTTGCAGAAC
CAGCGGAAAGCACAACTGTGGTATTAGTTAGTGCTTCAAGTAGTGAAGCT
GGCGAACCAGTAGATGACATTGATGAAGTACCAAAAGAGAAACCTGTATT
ACCACTCACACCTGAATTACTGGCTGAACGAGAAGAATCTTCTGATGTTT
CCCCAGCTGCTGATATGGAGGATCGCCCACCTGCATATGATTGCCTAGTT
CAAAACACAGAAGATACACCACCTCAATCACCACACTATGTTAATCTTCA
AACTCTATCTTCTCAAAAAGAACTTGATGATATTCCAATTGAAACTGAAC
CGGTTTCAGATACAGAGGAAGATACAATCGAAGACCTCCCACCTCCACCA
ACTATTCCACCTCCAGCAGCACCAATTCCTTCAACCATCCTTGAAGAAGA
AGAACCTACTGAGGAGCCTGCTCTTCCAGTTGTTGAAGAAGTTGTTCCAG
TAGTGAAGGCTCCTACAGAAGAGGCTGCCCCAGTCAGTGAGGAACAGGCT
GCCCCAGTTGTTAAGGAACAGGCTGCCCCAGTCATTGAGGAATTGGCTGC
CCCAGTTGTTGAGGAGCCAGCTGCTCTAATTGTCGAAGAGACAACCACCC
CAGTTGTTGAGGAGCCAGCTACCCCAGTCATTGAGGAGCCAGCTACTCCT
GTCGTTGAGGAGCTAGCTACTCCTGTCGTTGAGGAGCTAGCTACCCCAGT
CATTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTG
TTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTT
GAGGAACCAACTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGA
GGAACCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGG
AGCCAGCTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAA
GCAGCTACCCCAGTTGTTGAGGAACCAGCTACCCCAGTTATTGAGGAGCC
AGCCACCCCGGTTATTGAGGAGCCAGCCACCCCGGTTGTTGAGGAGCCAG
CCACCCCGGTTGTTGAGGAGCCAGCTACCCCAGTCGTTGAGGAGCCAGCT
ACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAGCCAGCTAC
CCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAGCCAGCTACCC
CAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCA
GTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAACCAACTACCCCAGT
CGTTGAGGAGCCAACTACCCCAGTTGTTGAGGAGCCAACTACCCCAGTCG
TTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAGCTGCCCCAGTTGTC
GAGGAAACATCTATTGAGGAAACAAGTCTTGATGAAGAACCAGCAGTTAA
TGATGAAAAAGAACCTGAAGTTGTTCTTCTGAAAGCTGAAGAAGTGGGGG
ATGCTGATGAACTTCCTGTAATGAAAGTTGAGGAAGTCGGACAGTCTGAT
GAAGCAGCTGATAAAACTGAGAACACTTTGTTAGATGCAACGAATGTTTC
TCCAATGCCAGAACCGGAAGAGTTCGACGATAACCCTACATATTTCATAA
AAGTTACTGAGGCTAAATAAATCCAAACGAacatttttaagtatttttaa
aGCTTTACTATGCAAAATAGAAATTTCTAGTTTTATACAGAGTATATATT
GATAACTTCTTTAAAGTTTCAGGCCGTTTTTTGAATTTGGAATGTATGAG
AAAGTTATCGGTAGTTTtccttttcctgaatttttgtaacagagaatttt
cttttcatttgccATTTTTCGTGAATCAGTTTTCGAGGTATTTGTAACAA
TGTTTTAGTATTTGTTTTTATCCTTTGAACTTTGTCATGGTAGGATGTTT
TTAACATACCGTATcagtaaattatttttttagtatCATGTATTTATTAG
TATTTTCATGTTCAGTTCCCTCGATTTTCGCTAGTAGTTttcattttaat
tctttttccgatggttttttttggtccttttttTCAACAACGCAGAGGCT
TTATTGGAGTCGAACAGAATATCGTCTCTATGCGagttcttgaaattttt
ttcaattactCTAACCTTGACCCCGAAACGGGTTTTATCGAGGGTGAGTA
TTGTTTTACgttgatttttttaaagttagtGATTCGCGAGAATTAGTCCT
GTCGGTACAAAGGGATTTACGTATATTTTACATACGAAGCTCATTTGTAA
TACGGTATTTTCAGCTCATTTCTTTCAATTAATATAAAAATCATGATCAA
TTTTGTACATCTTCGCCTATCGATCTCATTGTTGATATTGTTTTTCCAGA
TGATTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001017-exon-sc0000007-1491911889:745612..745898 | TCONS_00001017-exon-sc0000007-1491911889:745612..745898 | Clytia hemisphaerica | exon |
| TCONS_00001017-exon-sc0000007-1510915933:745612..745898 | TCONS_00001017-exon-sc0000007-1510915933:745612..745898 | Clytia hemisphaerica | exon |
| TCONS_00001017-exon-sc0000007-1575043694:745612..745898 | TCONS_00001017-exon-sc0000007-1575043694:745612..745898 | Clytia hemisphaerica | exon |
| TCONS_00001017-exon-sc0000007-1491911889:746553..746615 | TCONS_00001017-exon-sc0000007-1491911889:746553..746615 | Clytia hemisphaerica | exon |
| TCONS_00001017-exon-sc0000007-1510915933:746553..746615 | TCONS_00001017-exon-sc0000007-1510915933:746553..746615 | Clytia hemisphaerica | exon |
| TCONS_00001017-exon-sc0000007-1575043694:746553..746615 | TCONS_00001017-exon-sc0000007-1575043694:746553..746615 | Clytia hemisphaerica | exon |
| TCONS_00001017-exon-sc0000007-1491911889:748875..751470 | TCONS_00001017-exon-sc0000007-1491911889:748875..751470 | Clytia hemisphaerica | exon |
| TCONS_00001017-exon-sc0000007-1510915933:748875..751470 | TCONS_00001017-exon-sc0000007-1510915933:748875..751470 | Clytia hemisphaerica | exon |
| TCONS_00001017-exon-sc0000007-1575043694:748875..751470 | TCONS_00001017-exon-sc0000007-1575043694:748875..751470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000007 | supercontig | sc0000007:745612..751470 + |
Blast
The following BLAST results are available for this feature:
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