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TCONS_00001017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001017
Unique NameTCONS_00001017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2946

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001017 ID=TCONS_00001017|Name=TCONS_00001017|organism=Clytia hemisphaerica|type=transcript|length=2946bp
aatagctcatgaaaaaaaataaaagcagTCTATCATGCTGTGAACTGTGT
ACAAGAAAAGACACCAACATGTTGCTATAAAACATAAAGACAGTGAATCT
TGAGATAAATCATTGACTGTGACTGATACAACACAATACACATATACACC
AATCAATATATCTTGGACATTCACTTTAACCAAACCATATAATCTTCATC
ATGGGCCAAAAATACTCGGTTATAAAGGATTTAACCAGGGAGGTTGAAAA
ATATGAAAGGGAAAAGCGTCAATATGAGAGGGAACAGGCATACAAGTCTG
GTGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGTTTCG
TCCATTCATCCTACTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCA
AGATGATACTGATGCACCTAAAGTAGACTCTCCTGTCGAAACTAGCACTC
CTGCACCGGAAAGTGATGAAGAGAGTGTCTCTGTTTTAACAGAAACTTAC
TCAGAAGATGTCAAGGAAGCCAGTATTGTTGCAGAACCAGCGGAAAGCAC
AACTGTGGTATTAGTTAGTGCTTCAAGTAGTGAAGCTGGCGAACCAGTAG
ATGACATTGATGAAGTACCAAAAGAGAAACCTGTATTACCACTCACACCT
GAATTACTGGCTGAACGAGAAGAATCTTCTGATGTTTCCCCAGCTGCTGA
TATGGAGGATCGCCCACCTGCATATGATTGCCTAGTTCAAAACACAGAAG
ATACACCACCTCAATCACCACACTATGTTAATCTTCAAACTCTATCTTCT
CAAAAAGAACTTGATGATATTCCAATTGAAACTGAACCGGTTTCAGATAC
AGAGGAAGATACAATCGAAGACCTCCCACCTCCACCAACTATTCCACCTC
CAGCAGCACCAATTCCTTCAACCATCCTTGAAGAAGAAGAACCTACTGAG
GAGCCTGCTCTTCCAGTTGTTGAAGAAGTTGTTCCAGTAGTGAAGGCTCC
TACAGAAGAGGCTGCCCCAGTCAGTGAGGAACAGGCTGCCCCAGTTGTTA
AGGAACAGGCTGCCCCAGTCATTGAGGAATTGGCTGCCCCAGTTGTTGAG
GAGCCAGCTGCTCTAATTGTCGAAGAGACAACCACCCCAGTTGTTGAGGA
GCCAGCTACCCCAGTCATTGAGGAGCCAGCTACTCCTGTCGTTGAGGAGC
TAGCTACTCCTGTCGTTGAGGAGCTAGCTACCCCAGTCATTGAGGAGCCA
GCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAAC
TACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAACTA
CCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACC
CCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAGCTACCCC
AGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAAGCAGCTACCCCAG
TTGTTGAGGAACCAGCTACCCCAGTTATTGAGGAGCCAGCCACCCCGGTT
ATTGAGGAGCCAGCCACCCCGGTTGTTGAGGAGCCAGCCACCCCGGTTGT
TGAGGAGCCAGCTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTCGTTG
AGGAGCCAGCTACCCCAGTTGTTGAGGAGCCAGCTACCCCAGTTGTTGAG
GAACCAACTACCCCAGTTGTTGAGGAGCCAGCTACCCCAGTCGTTGAGGA
GCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGC
CAACTACCCCAGTCGTTGAGGAACCAACTACCCCAGTCGTTGAGGAGCCA
ACTACCCCAGTTGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAAC
TACCCCAGTCGTTGAGGAGCCAGCTGCCCCAGTTGTCGAGGAAACATCTA
TTGAGGAAACAAGTCTTGATGAAGAACCAGCAGTTAATGATGAAAAAGAA
CCTGAAGTTGTTCTTCTGAAAGCTGAAGAAGTGGGGGATGCTGATGAACT
TCCTGTAATGAAAGTTGAGGAAGTCGGACAGTCTGATGAAGCAGCTGATA
AAACTGAGAACACTTTGTTAGATGCAACGAATGTTTCTCCAATGCCAGAA
CCGGAAGAGTTCGACGATAACCCTACATATTTCATAAAAGTTACTGAGGC
TAAATAAATCCAAACGAacatttttaagtatttttaaaGCTTTACTATGC
AAAATAGAAATTTCTAGTTTTATACAGAGTATATATTGATAACTTCTTTA
AAGTTTCAGGCCGTTTTTTGAATTTGGAATGTATGAGAAAGTTATCGGTA
GTTTtccttttcctgaatttttgtaacagagaattttcttttcatttgcc
ATTTTTCGTGAATCAGTTTTCGAGGTATTTGTAACAATGTTTTAGTATTT
GTTTTTATCCTTTGAACTTTGTCATGGTAGGATGTTTTTAACATACCGTA
TcagtaaattatttttttagtatCATGTATTTATTAGTATTTTCATGTTC
AGTTCCCTCGATTTTCGCTAGTAGTTttcattttaattctttttccgatg
gttttttttggtccttttttTCAACAACGCAGAGGCTTTATTGGAGTCGA
ACAGAATATCGTCTCTATGCGagttcttgaaatttttttcaattactCTA
ACCTTGACCCCGAAACGGGTTTTATCGAGGGTGAGTATTGTTTTACgttg
atttttttaaagttagtGATTCGCGAGAATTAGTCCTGTCGGTACAAAGG
GATTTACGTATATTTTACATACGAAGCTCATTTGTAATACGGTATTTTCA
GCTCATTTCTTTCAATTAATATAAAAATCATGATCAATTTTGTACATCTT
CGCCTATCGATCTCATTGTTGATATTGTTTTTCCAGATGATTCGAT
Run BLAST on NCBI

transcript from alignment at sc0000007:745612..751470+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001017 ID=TCONS_00001017|Name=TCONS_00001017|organism=Clytia hemisphaerica|type=transcript|length=5859bp|location=Sequence derived from alignment at sc0000007:745612..751470+ (Clytia hemisphaerica)
aatagctcatgaaaaaaaataaaagcagTCTATCATGCTGTGAACTGTGT ACAAGAAAAGACACCAACATGTTGCTATAAAACATAAAGACAGTGAATCT TGAGATAAATCATTGACTGTGACTGATACAACACAATACACATATACACC AATCAATATATCTTGGACATTCACTTTAACCAAACCATATAATCTTCATC ATGGGCCAAAAATACTCGGTTATAAAGGATTTAACCAGGGAGGTTGAAAA ATATGAAAGGGAAAAGCGTCAATATGAGAGGGAACAGGTAAATGACCtat gtttgaaaatttcaacatcaaaCTTCCAGACATTGGggtttttttattat tcttaATATCATttcatatctttttaaatcATAGGTAATCTTATTATTGT AGTATTGTGTGTTATGATTAaactttagaaatttttataaaagtaacTTT ACTTTTATAAAAGGTGTTAATCTATAGATCTACATGTTCTTGTTTTACTT TTGAGATTACACAACAAGACGCTTCCAaatgtattttgtttttattttat tgtaatAGCTGtctgataaaaattgaaatttgacctGAATAGTGTTTGTT CAGTGTGATAGCCAACTGAAACGACATCCTGTGTATTGTAATTTTCTTTA AAGAGGCAATAAATCATAACTAAGTGGCTCCCCTTACTTTTAATTGATAG TACTTAATGAACTGAATCATATGTATTTACCCTACCTATAATTAATACAA TTTCTTTTGCTTATTCCGATTGATttaataaagagaaaaatacaaggaaa acattttatttttactacAGGATGTCTCCAGTTAAGGAAACTCACCATGA CACCACATTTCCTGCCGCAAAGCCAAATTGTTGATCAATATCGTTCTTGT TTCCTTTAACCAATGCAAAATTTGTTTATATTACACTTTAGGCATACAAG TCTGGTGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGT TTCGGTTAGTTGCATAGTCAAAATTGaacaatttttaatttataaataTT ACGATCACCATAAACGAGACAGCACTTCTAAAGCAATATAAAGggaaaat aatagaaatttagaatataatttttttttctcattaaaaCATGACATTGC TTCCAGTTATTTTCTGTCTGTTCTGCCAGATGCTTTCTACACAACTTTGC ATGTTACATTTCATTAACTGATTCTCGTGAATTGATTTTTAGTCCATTCA TCCTACTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATGATA CTGATGCACCTAAAGTAGACTCTCCTGTCGAANCTTATTATTCTTAATAT CATttcatatctttttaaatcATAGGTTATCTTATTATTGTAGTATTCTG TAGTATTGTGTGTTATGATTAaactttagaaatttttataaaagtaacTT TACTTTTATAAAAGGTGTTAATCTATAGATCTACATGTTCTTGTTTTACT TTTGAGATTACACAACAAGACGCTTCCAaatgtattttgtttttatttta ttgtaatAGCTGtctgataaaaattgaaatttgacctGAATAGTGTTTGT TCAGTGTGATAGCCAACTGAAACGACATCCTGTGTATTGTAATTTTCTTT AAAGAGGCAATAAATCATAACTAAGTGGCTCCCCTTACTTTTAATTGATA GTACTTAATGAACTGAATCATATGTATTTACCCTACCTATAATTAATACA ATTTCTTTTGCTTATTCCGATTGATttaataaagagaaaaatacaaggaa aacattttatttttactacAGGATGTCTCCAGTTAAGGAAACTCACCATG ACACCACATTTCCTGCCGCAAAGCCAAATTGTTGATCAATATCGTTCTTG TTTCCTTTAACCAATGCAAAATTTGTTTATATTACACTTTAGGCATACAA GTCTGGTGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATG TTTCGGTTAGTTGCATAGTCAAAATTGaacaatttttaatttataaataT TACGATCACCAAAAACGAGACAGCACTTTTAAAGCAATATAAAGggaaaa taatagaaatttagaatataaattttttttctcattaaaaCATGACATGC TTCCAGTTATTTTCTGTCTGTTCTGCCAGATGCTTTCTACACAACTTTGC ATGTTACATTTCATTAACTGATTCTCGTGAATTGATTTTTAGTCCATTCA TCCTACTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATGATA CTGATGCACCTAAAGTAGACTCTCCTGTCGAAACTAGCACTCCTGCACCG GAAAGTGATGAAGAGAGTGTCTCTGTTTTAACAGAAACTTACTCAGAAGA TGTCAAGGAAGCCAGTATTGTTGCAGAACCAGCGGAAAGCACAACTGTGG TATTAGTTAGTGCTTCAAGTAGTGAAGCTGGTGAACCAGTAGATGACATT GATGAAGTACCAAAAGAGAAACCTGTATTACCACTCACACCTGAATTACT GGCTGAACGAGAAGAATCTTCTGATGTTTCCCAAGCTGCTGATATGGAGG ATCGCCCACCTGCATATGATTGCCTAGTTCAAAACACAGAAGATACACCA CCTCAATCACCACACTATGTTAATCTTCAAACTCTATCTTCTCAAAAAGA ACTTGATGATATTCCAATTGAAACTGAACCGGTTTCAGATACAGAGGAAG ATACAATCGAAGACCTCCCACCTCCACCAACTATTCCACCTCCAGCAGCA CCAATTCCTTCAACCATCCTTGAAGAAGAAGAACCTACTGAGGAGCCTGC TCTTCCAGTTGTTGAAGAAGTTGTTCCAGTAGTAAAGGCTCCTACAGAAG AGGCTGCCCCAGTCAGTGAGGAACAGGCTGCCCCAGTTGTTAAGGAACAG GCTGCCCCAGTCATTGAGGAATTGGCTGCCCCAGTTGTTGAGGAGCCAGC TGCTCTAATTGTCGAAGAGACAACCACCCCAGTTGTTGAGGAGCCAGCTA CCCCAGTCATTGAGGAGCCAGGTACTCCTGTCGTTGAGGAGCTAGCTACT CCTGTCGTTGAGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT TCTCATTAAAACATGACATGCTTCCAGTTATTTTCTGTCTGTTCTGCCAG ATGCTTTCTACACAACTTTGCATGTTACATTTCATTAACTGATTCTCGTG AATTGATTTTTAGTCCATTCATCCTACTCAATCGTTGTATCCTGACCTCA AAGAACTGGAGCAAGATGATACTGATGCACCTAAAGTAGACTCTCCTGTC GAAACTAGCACTCCTGCACCGGAAAGTGATGAAGAGAGTGTCTCTGTTTT AACAGAAACTTACTCAGAAGATGTCAAGGAAGCCAGTATTGTTGCAGAAC CAGCGGAAAGCACAACTGTGGTATTAGTTAGTGCTTCAAGTAGTGAAGCT GGCGAACCAGTAGATGACATTGATGAAGTACCAAAAGAGAAACCTGTATT ACCACTCACACCTGAATTACTGGCTGAACGAGAAGAATCTTCTGATGTTT CCCCAGCTGCTGATATGGAGGATCGCCCACCTGCATATGATTGCCTAGTT CAAAACACAGAAGATACACCACCTCAATCACCACACTATGTTAATCTTCA AACTCTATCTTCTCAAAAAGAACTTGATGATATTCCAATTGAAACTGAAC CGGTTTCAGATACAGAGGAAGATACAATCGAAGACCTCCCACCTCCACCA ACTATTCCACCTCCAGCAGCACCAATTCCTTCAACCATCCTTGAAGAAGA AGAACCTACTGAGGAGCCTGCTCTTCCAGTTGTTGAAGAAGTTGTTCCAG TAGTGAAGGCTCCTACAGAAGAGGCTGCCCCAGTCAGTGAGGAACAGGCT GCCCCAGTTGTTAAGGAACAGGCTGCCCCAGTCATTGAGGAATTGGCTGC CCCAGTTGTTGAGGAGCCAGCTGCTCTAATTGTCGAAGAGACAACCACCC CAGTTGTTGAGGAGCCAGCTACCCCAGTCATTGAGGAGCCAGCTACTCCT GTCGTTGAGGAGCTAGCTACTCCTGTCGTTGAGGAGCTAGCTACCCCAGT CATTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTG TTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTT GAGGAACCAACTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGA GGAACCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGG AGCCAGCTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAA GCAGCTACCCCAGTTGTTGAGGAACCAGCTACCCCAGTTATTGAGGAGCC AGCCACCCCGGTTATTGAGGAGCCAGCCACCCCGGTTGTTGAGGAGCCAG CCACCCCGGTTGTTGAGGAGCCAGCTACCCCAGTCGTTGAGGAGCCAGCT ACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAGCCAGCTAC CCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAGCCAGCTACCC CAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCA GTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAACCAACTACCCCAGT CGTTGAGGAGCCAACTACCCCAGTTGTTGAGGAGCCAACTACCCCAGTCG TTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAGCTGCCCCAGTTGTC GAGGAAACATCTATTGAGGAAACAAGTCTTGATGAAGAACCAGCAGTTAA TGATGAAAAAGAACCTGAAGTTGTTCTTCTGAAAGCTGAAGAAGTGGGGG ATGCTGATGAACTTCCTGTAATGAAAGTTGAGGAAGTCGGACAGTCTGAT GAAGCAGCTGATAAAACTGAGAACACTTTGTTAGATGCAACGAATGTTTC TCCAATGCCAGAACCGGAAGAGTTCGACGATAACCCTACATATTTCATAA AAGTTACTGAGGCTAAATAAATCCAAACGAacatttttaagtatttttaa aGCTTTACTATGCAAAATAGAAATTTCTAGTTTTATACAGAGTATATATT GATAACTTCTTTAAAGTTTCAGGCCGTTTTTTGAATTTGGAATGTATGAG AAAGTTATCGGTAGTTTtccttttcctgaatttttgtaacagagaatttt cttttcatttgccATTTTTCGTGAATCAGTTTTCGAGGTATTTGTAACAA TGTTTTAGTATTTGTTTTTATCCTTTGAACTTTGTCATGGTAGGATGTTT TTAACATACCGTATcagtaaattatttttttagtatCATGTATTTATTAG TATTTTCATGTTCAGTTCCCTCGATTTTCGCTAGTAGTTttcattttaat tctttttccgatggttttttttggtccttttttTCAACAACGCAGAGGCT TTATTGGAGTCGAACAGAATATCGTCTCTATGCGagttcttgaaattttt ttcaattactCTAACCTTGACCCCGAAACGGGTTTTATCGAGGGTGAGTA TTGTTTTACgttgatttttttaaagttagtGATTCGCGAGAATTAGTCCT GTCGGTACAAAGGGATTTACGTATATTTTACATACGAAGCTCATTTGTAA TACGGTATTTTCAGCTCATTTCTTTCAATTAATATAAAAATCATGATCAA TTTTGTACATCTTCGCCTATCGATCTCATTGTTGATATTGTTTTTCCAGA TGATTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000585XLOC_000585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001017-exon-sc0000007-1491911889:745612..745898TCONS_00001017-exon-sc0000007-1491911889:745612..745898Clytia hemisphaericaexon
TCONS_00001017-exon-sc0000007-1510915933:745612..745898TCONS_00001017-exon-sc0000007-1510915933:745612..745898Clytia hemisphaericaexon
TCONS_00001017-exon-sc0000007-1575043694:745612..745898TCONS_00001017-exon-sc0000007-1575043694:745612..745898Clytia hemisphaericaexon
TCONS_00001017-exon-sc0000007-1491911889:746553..746615TCONS_00001017-exon-sc0000007-1491911889:746553..746615Clytia hemisphaericaexon
TCONS_00001017-exon-sc0000007-1510915933:746553..746615TCONS_00001017-exon-sc0000007-1510915933:746553..746615Clytia hemisphaericaexon
TCONS_00001017-exon-sc0000007-1575043694:746553..746615TCONS_00001017-exon-sc0000007-1575043694:746553..746615Clytia hemisphaericaexon
TCONS_00001017-exon-sc0000007-1491911889:748875..751470TCONS_00001017-exon-sc0000007-1491911889:748875..751470Clytia hemisphaericaexon
TCONS_00001017-exon-sc0000007-1510915933:748875..751470TCONS_00001017-exon-sc0000007-1510915933:748875..751470Clytia hemisphaericaexon
TCONS_00001017-exon-sc0000007-1575043694:748875..751470TCONS_00001017-exon-sc0000007-1575043694:748875..751470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:745612..751470 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.62546 5.64377 4.10354 4.73143 2.59632 4.92045 12.5551 6.03825 12.8721 22.0796 18.8287 10.5131 18.3317 22.4021 51.4474 62.4716 42.9961 43.1145 22.6768 32.1052 42.8038 48.6314 38.1752 49.4789 2.35816 7.33016 78.8396 81.4971 48.771 41.0488
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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