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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001010 ID=TCONS_00001010|Name=TCONS_00001010|organism=Clytia hemisphaerica|type=transcript|length=1691bpRun BLAST on NCBI protein sequence of TCONS_00001010-protein >TCONS_00001010-protein ID=TCONS_00001010-protein|Name=TCONS_00001010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp MAAVQHVLLSTEAELLVKALDVSSLEKVGDKRWWNRHDMLEKLNIQSIMNRun BLAST on NCBI transcript from alignment at sc0000007:663000..677968+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001010 ID=TCONS_00001010|Name=TCONS_00001010|organism=Clytia hemisphaerica|type=transcript|length=14969bp|location=Sequence derived from alignment at sc0000007:663000..677968+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:663000..677968+ >TCONS_00001010 ID=TCONS_00001010|Name=TCONS_00001010|organism=Clytia hemisphaerica|type=CDS|length=20736bp|location=Sequence derived from alignment at sc0000007:663000..677968+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00001010 vs. Swiss-Prot (Human)
Match: ZMY10 (Zinc finger MYND domain-containing protein 10 OS=Homo sapiens GN=ZMYND10 PE=1 SV=2) HSP 1 Score: 367.081 bits (941), Expect = 1.140e-120 Identity = 195/432 (45.14%), Postives = 292/432 (67.59%), Query Frame = 2
Query: 167 VLLSTEAELLVKALDVSSLEKVGDKRWWNRHDMLEKLNIQSIMNIP-SNSCFITENLLTHGKISLVINELITSEIWSERIFPILYHEMSQKDQSTLPVYMTLFHEATVAGLVESVFYYKEVSEEAGDFLLDLIDYAYRKLTKLISKQHCESITQ------KDPKNDLLKQNEDIQFTIAMKCISIIKYICDAMDSITLSAITRILNTHDFPYLLSQLIDLAPWKKRKENGEVEIFTDNKWVIVPKDETHLLPKIEGQVWLTLYQLLLHPEAQRKYEYNSHRKTQXXXXXXXXXXXXXXXXPYLSEVQRFLENLSVMDPPPSKQDLIIEQIPEVRNKLERMYEGRWNKIAKTQLQQNFTMSSKDMKEHAQRLAATYDLDILESLIDEAPTCSNCQNEATKRCSRCQNEWYCSRPCQVKHWSKHKELCNILSAK 1441
+LL EAE+LV+ L L ++G + W +H+ LEKLN+Q+I++ S I E L+THGK+ ++ ELI E+W +++FP+ K Q+T P+YM + HEA++ L+E+VF++KEV E A D +LDL+DY +RKLT L+++ C + +P +L KQ E ++F IA+K +S+++YI D +DS++LS ++R+L+TH+ P LL +L++ +PW +R E G+++ F ++W V E L K++GQVW+ LY LLL PEAQ +Y S K +LLKLR +L + LLDQLP L+ +Q FL +L++ + P K+DL++EQIPE+ +LER G+W IAK QLQ F+ S +D++ A+R A TY LD+LE++ E P C+ C EA+KRCSRCQNEWYC R CQVKHW KH + C +L+A+
Sbjct: 6 LLLPGEAEVLVRGLRSFPLREMGSEGWNQQHENLEKLNMQAILDATVSQGEPIQELLVTHGKVPTLVEELIAVEMWKQKVFPVFCRVEDFKPQNTFPIYMVVHHEASIINLLETVFFHKEVCESAEDTVLDLVDYCHRKLTLLVAQSGCGGPPEGEGSQDSNPMQELQKQAELMEFEIALKALSVLRYITDCVDSLSLSTLSRMLSTHNLPCLLVELLEHSPWSRR-EGGKLQQFEGSRWHTVAPSEQQKLSKLDGQVWIALYNLLLSPEAQARYCLTSFAKGRLLKLRAFLTDTLLDQLPNLAHLQSFLAHLTLTETQPPKKDLVLEQIPEIWERLERENRGKWQAIAKHQLQHVFSPSEQDLRLQARRWAETYRLDVLEAVAPERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC-VLAAQ 435 The following BLAST results are available for this feature:
BLAST of TCONS_00001010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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