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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000992 ID=TCONS_00000992|Name=TCONS_00000992|organism=Clytia hemisphaerica|type=transcript|length=993bp
ATATTGACGGGCAACGTGGATACaagacaacaacaacaaaaaagaagaaa
ggaaGATGAGTActtttgacccaaatttttcGCTTTATTTTATGGCTTTC
TCAACCCACCTTTCGAGCAGATTTATGataaaagaaaaatgtcGAGCTCT
GAAGATGAAGATATAAATGAACAGCAACTGAAAATCACATTGGTTGGAGA
TGGTACGGCTGGTAAAACTTCTCTTTGTACGCGGCTTGCTcaagaaaatt
ttgacaaaCAATACAAACAGACTATGGGTTTGGACTTCTTCATGAAACGC
TTTTCTTTACCTGGAAATACAAATGTCACATTACAAGTTTGGGACATTGG
GGGACAGCAGATTGGTGGTAAAATGTTAGATACATATCTGTATGGGGCCA
ATGGAATTCTGTTGGTCTATGATGTCACTAATCAtaatagttttgaaaat
ttacaagaCTGGTTAGAGGTCATTAAACAAACTTATGCCAAAAGTGAAAA
GAAACCATACCTTGGTTTGATTGGAAATAAAAAAGACTTGGAGCATTTGC
GCACAgttaaaagagaaaaacatgTTGAATTTGCCCAAGAAAATGGGATG
GCAAACTTCTTTTTATCTGCAAAATCAGGTGATCaagtgaatttttgttt
tcaaaaaattgcagCTGATATATTGGGGATCAGATTGTCAAAACAAGAGG
TTGAGCAATCTAATCGGGTGATTAAAGCAGACATTGTAAATTACAAAGAG
ATGGCCACACCTGCACTGCACACTGGATCGAGTCATACCAAGAGCTCACT
TTGTTCTattcaatgaatttttattacttcaaaaaactaaaaactataTA
TCAGAGTGTGTTtaaattttaatcttttttaacTCAAGCACATCTTAATT
TATTGATTTTAGCATTTTATTTCTTCTAGAAATGacaaatatttatttat
tttcaaccAGATTGATTAAAAGACACATATTCGCTTCAAACAT Run BLAST on NCBI transcript from alignment at sc0000007:384402..393703+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000992 ID=TCONS_00000992|Name=TCONS_00000992|organism=Clytia hemisphaerica|type=transcript|length=9302bp|location=Sequence derived from alignment at sc0000007:384402..393703+ (Clytia hemisphaerica)
ATATTGACGGGCAACGTGGATACaagacaacaacaacaaaaaagaagaaa
ggaaGATGAGTActtttgacccaaatttttcGCTTTATTTTATGGCTTTC
TCAACCCACCTTTCGAGCAGATTTATGGTATAGATTTAagtattttcttt
ctcattactCTAACATTCAAGTAAACTTATTGACCAGATGgcgataaaaa
ataaaaaatttctgtgTTTCTGTGAAGCCTTTTTCTTAAGAATTTCTGCA
TGCCGGTTTTTTATCTCTtatagagtcccctgcccagttggcgactggtc
tagttggcgaccgaacgtctttgaacccagaaaagtcatacaaaaacaaa
cctctggagaatttcttttggtagttatctgccttgacctatttcccgta
gctactgtgtaaaaaaggttttagaaaaaaacgagtagaatccgaaagat
ccaactttgcacacaaaaagccggatttttcaaaaaaaataaaaaatggc
tacctgtggacaaaaaagctttgtaagaaaaaacgcttcaactaCAACTC
CCAcgccaaaaaatacttgtccaaaacaatgagttagaaagcatttctgt
aaaaatcagctcgatacagtttccttcgtgtgaaatattgataaaaaagt
tgatgcaatcagcttcgaaatatgtcgtccagtctgcgaccgaccaaact
caaaaaatgaaaaagaagactctacattgcgatcaaaacattccagacgc
gaaaagaaaaaaacaggcataaaaaattcccgcgtttttatcaaatgaag
actctccatagaccgccactttcaaaacaaaacaaaaacaaactttagaa
aaaaatggcgacttgaagaaaaattctgaaaaaacatgcagaagggaaat
gtaagtgagctattttaaaacaaaagaacgagtgtaaataaatttgatac
gggaaagcttatgagtatttttatcatcctgatcaattaatatgacctta
cctgcaagtacagcactgattttctctttttaacgatcagtcgcagactg
gtacgtcggtcgggaactgggcactagtaccgctcgcttcgaaagttttt
tattctaagaagatcgcctcaaataaaaaatcaaaacaaacacgaagaac
aggttaaaagttgtctaaccgttggttgaaaaggattttcaaaaataagt
taaaagtaagtgaaaaatttgaatccaaaaatttcggtcgccaactgggc
aggttACTCTAGCGCCTCTAATTTTCACGCCTCTAATAGGATATTTGCGC
TCCTTCTCATTTTCACAGATTATgaaatttccggcatattttctGAGTGT
TTTTATGATGATTATAGGTAAAGAAGGGCAAAAAACACATAAAATCAGAA
GTTTAACTCAATCACTTTACTTTAGGTGCCATCACCAAGAATATNcaaat
atggctaattttgattgttcaattgttttacaagtttgttttggacacgt
gattttaattgttctttttaatgatACGTGGTTCGcgtaatgtttacatt
ttactactgtaatgtccctttaaatctGACAAGTTAAAGAGATGCGGATG
CAACGTTTCAGGATAatataatatgaaaatttgtaatttgtaaGTACTCT
TGATTTGGAGAAAACCCTGTTATAGTGTTTCACGTTAGTTCTgtttagta
ttttgttaatattttatcagtatttttgttaatATTAGTGTTTGATTTAT
TCTACAGGTGTTTTTAATTAGGTCTTAGATCAGCTTCTTGAGCATTTTGA
AAGTCTTAATTGAGTATCTTTAAAGTGGCAAAGACAAATAAAACTATAAC
AGAAAGTatattgttaaaatattatcttcTATTGTCTGTTAACATTTTAT
CATTTGAATTCTATCTTTTTCTGATTTCACTCCAGATTTTGTTAATATGC
AAACAATTGGTCATTTTTAACCATTTATgtcaattttgataatattttaN
AATAATTTATTACTATGTTTAATTTAGCCATATattaaatatttacaaaa
tttatcagagcgttaacaaaatattgataaatttgTAACACTATGGTACA
CTCAGAAAATTACGAAAATGGTTTGCTGCCCTTGGAACCTAGCAAATTAG
ATTTTAGACAATTTCATGAGAAAGTGAATTTATCAGATAGAAATAACGAT
TGTTGCATGTATTTTGGacacaaaaatgataaatttttaacaattttggc
aaaaattgaacttaatcttagcaaggaaaaaatataagatatcaaGTTTT
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCTTGATT
TGATCGTTGTGACACAGGACCTCAACAGTGTTAaagatttatcaattttt
gaagataacataTCCACTGATATTTGTCAATATTCACTATgtttaaataa
ttgataaaagtttaacacaTGGTATCAATGTCCACAAGTAGGCCAAAATT
GGTCTCATATTATTGATCGTGTCCATATTCTTGCCATCACCATCAGGTGC
CATTTAAGCTAAAAATTTTACATCCCAGacagtcagtcagtcaggagttt
ttgcctaattaggaaagtatagaccttttttcaaagaggccaccctgttg
aatgaataattatgtagtccagctagcagaaaaacaatgatacacccatg
cataattattacaatatgcacaaaacagtaattatgcattgctgtatcat
tgtttgtatggctggtagttagtcacactagcgtcccgcgaagcaaaaaa
atgcgccgcaaaacttctaaagggattcatgaaaaaataacccagggctt
tttaatgaaattagcagtccatcacaaactgccatataaacaaagctcaa
cattctcacaaaagttgtctttttgatttcccaaattTCGTCGTAAGCGT
TCACTTTCACAATAataacaatccgggggtaagtggcgaagcaacacatc
agattattcgtaaagtaaagaaatatattttgacaTTGACAATCGAATAT
gatatattacattatatttcctttaattcaaaatcaaaaattcattttgc
attAATTcgcgaaaaaagaaaataataataatgaattaatattacatact
aagacgcccccgtcttttactctggCCTAACTTCTGATCTCGGAACGTga
aaaacgcccgtccgcccaatatctaCCTAATCAGCTTAAATTTACTTTAA
TTGtactttgactttcaaaaaatagtatttaaaaattatgaatttataat
aattacaaaaaacaaaaagttagatacttcattagtgaaatattcaataa
attcctagtttcaattttcactgggcgtttttctagggcttcgtttattg
cgcaatttttgcgtcacacaaactttctgggccgctcgtaataattatga
attgccaaatttggttcaaCATTGTCAGgacaggatcgatggtgacatca
cctaagcataaaaaagaaaggattccGTCAGGTTTATGCATATATAtaaa
tttgcgagatattctattcgccgcgcgagcgcatTTTTCGTAaactagtc
ggaatactttctttttttactcgcgggattgatggtaacttttcatcttt
gtttttttttaaatgaagcacaaccgaataaaatgaaacttcaaaaagtt
gcgtatttccagtgagtaaacgattctgacaattaacaaaattgatgatg
atgattttttttcggtcaggcaaatgtctcgtNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNcaggcaaatgtctcgtattgggggttctagtcttgaccc
ctaagcctacgcgagattgaagcgtttgggtaaacaagacaaaactccaa
aaaagctggtggtttgaagcgcttccgtgcgatcgaaatattgctgtttg
tgacggactgattagcattttcaaaaactttgagaaattacctaaaattt
gagccatagatgaaaaaatttgagccaagccaaccttgaaaactaatttg
aagatcaacttcacaagaaaaagatctacggggaaggcggaacccaccta
gatccacgcaccgccggataggctatttcccggaaattttgccggacctc
agaCCTGCTCagacaatgacccatttacatgtgcggaattatttttactt
gagcgtataaacaaggccttaaaaatcaaagcgctgtctcgggaattgaa
tgacaaaatttggtttgttgatatttggctgctgcacgttttattttgtt
tcaaactttcaagttttaattaattgatttgcgaacttgattcaggtaac
tctcatccttgttgtgcaaatacatcctgtagatgactgatgttgttttt
tctgaaagctagatttcctagtgtgactaactctaactggctggactaca
taattattcaacagggttgcctctttgaaaaaaggtctattttatgattt
tcctGACTTTTCTAATCAGGACACAGGAGAGCCTTTCCTAATAGATGCTT
TGGCTAACGCGACGGTtatttgaataactaattactccacagcagTTTAG
CCTGGGCGGTCGAGCGCTTAAGTACTGTacaaaagcgaataaaatctaat
acaattgaatcaattgaacgtaatcgaacataatcgaatacaattgaACG
TAATTGAAGCAATCGAATTGACTCGGCAttcgatttgttcgattgacacc
gtcgtCTGGCCATTACTTTTAGTAAGTCAAAATTGATCTATGTGaagaaa
tgtttaaaaaaatatgaaatcaaaTGGGCGGAGCATTGAGATACCATTGG
ATACCCCTTTAAAAAACCTGCTACAAAAAAAGGTACCCCCTATATCCTGA
TAGAGAAAACAGTAAgggctgaaactttttctggtgagtctaggctatct
atgaatttcttccctgggtatggtattttataaaagctgctaagaaaatt
tttattgcttggtgaaaaaatgcaattttagcaATTTACCCCTTAACACC
gacaaaatggttttcttgaataactttttataaaatagtccttttggtct
caaattttgaacatggattcactgcaaagttactaatgctacaattagat
cattggtacctaaatattttcaaaactgtacgttGAAATCAAATTACATG
GTGAATTGCAGAAAAATAGTACAATGTCCCTTCTGCATCAGTCTCTTTTT
GAGGACCCTGGCAAATGCAATTTCTAAGAACTTCACATTTTTGTGAACTC
TACTAAATAGCCTTCCTTGGATTGttatagaatttttttgttacagcccc
aatcttgagaaaaatgtTGCGGACGGGACACTTTGTTGCAGACGGGACAC
TTTGTTGCAGACaggacaaaaagtttttcactCATAGCTAGTACATgtaa
agtcaagaaaaatgataCTGCTGCAAAAAGCATGTGGTTCCCTATAGTTC
ATTGGCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGGGACAA
ATTTTTGGACCGTATTAGTTTTTACcagttaaaaaattcaaaatagatTA
TTTAAAGGCAATAAATGTCTTTAACGCAAGAAACCATTTAATATGccaca
acaaaacaaaaatggggGTCCTCTAGTTCCCAGATCTTGACTTGTAAGCA
TAAATGGAGCTTTTGTTGCAGATGGGACATTGTACTATTTTTCTGCAATT
CACcctacaccttaaaacctacaaacattgaaccccttgctcacaactta
ctgaaactgtaaaattgcaattcaggtgctaaaccgtgattcaattgatc
aaatacttgctagaaattcattaccaaaacaatatttgtattttatcagg
attttttttttaccagaTATCTTTCTATGTCTAAATCTtgagataattca
tttttaaggtgggtaagtatgctgaaaaactgctgactcagcaaaaaata
tatttggatactactaattcagggctatccagccgtgggaatgatttttt
ttctgaaaatgctcctaggaaaatgctgacgtcatcggaaaacgcccaaa
acatcgatttttcgccttaaaaatgtcatttctcggcaccaggtggttga
aacttaacaaataactccattttctttatctacttttcacgctggaTCAG
TTGGTAGCATCAGGTATTTGATTTGTAAAACCTTGTAAAATCTTCATTCA
CAGCATTGGCAGATTGATCACATCTTGCCAATAGAAATATTGACATGTTA
AAATAGTTTgatttttggctgttttttgtGTAAATCTCTCAACAGTCTGG
ACAGGTGGGGTGTAGCCAACTTTTTCAAGCCACTCAGTGatttttaactt
gaaaaagtCCCAAACTGGCCCAGGCATGTTCAGACCAGGTTTTCaacaaa
gaaaagcaaaaatttcaggGTAGCTATGTTGGGGCCATGCCATGGGTCGT
GTGTAGGACATCAACTATAATCATGGATGTATATATGATGACACTTGCCC
CAAAGGTAGCAAGGACaggggaaaatttttaattaaaatggTGCGTAGAA
TAGATCTTTATCAGCTAAACTACCTAATTTGATGGTTACCTTATtgctaa
attttgattgggCAGTAGATAAGTATTCCAGCTAGACCGtaagatttcca
gggggtttgatttactttttcttgagttgatttttactttagatttttat
aagaatgaattTATGAAATAAATCTGCATTTTTTAAAGGACATTTTCTCT
CTactattcttaaaaaaaccatTTTATAATTACCCTGAGGATATGAGATG
ATTTATAAGATACTATAAGGGAATAATTTATTGGGAAAAAAGTGTTGACA
AACAGTGCTTGATATCAAGAGGAGTACATTGAGGAACtgattttggctga
aatttcttaaaattggaaaaaaaaggTAGATGCTAAAAGGGTTAAAAGAG
TGCTGTATTTTCATTTAAATCTCTTGAAATAAATCTTCAACATTTTTACT
ACTTAGACTACAATGGAACTAATTTTACACCTCAAAATTATCAATGTCCC
TTCCTTACTGATAAATACTCTTATCATTTTGATtagataaaagaaaaatg
tcGAGCTCTGAAGATGAAGATATAAATGAACAGCAACTGAAAATCACATT
GGTTGGAGATGGTACGGCTGGTAAAACTTCTCTTTGTACGCGGCTTGCTc
aagaaaattttgacaaaCAATACAAACAGACTATGGGTTTGGACTTCTTC
ATGAAACGCTTTTCTTTACCTGGAAATACAAATGTCACATTACAAGTTTG
GGACATTGGGGGACAGCAGATTGGTGGTAAAATGTTAGATACATATCTGT
ATGGGGCCAATGGAATTCTGTTGGTCTATGATGTCACTAATCAtaatagt
tttgaaaatttacaagaCTGGTTAGAGGTCATTAAACAAACTTATGCCAA
AAGTGAAAAGAAACCATACCTTGGTTTGATTGGAAATAAAAAAGACTTGG
AGCATTTGCGCACAgttaaaagagaaaaacatgTTGAATTTGCCCAAGAA
AATGGGATGGCAAACTTCTTTTTATCTGCAAAATCAGGTGATCaagtgaa
tttttgttttcaaaaaattgcagCTGATATATTGGGGATCAGATTGTCAA
AACAAGAGGTTGAGCAATCTAATCGGGTGATTAAAGCAGACATTGTAAAT
TACAAAGAGATGGCCACACCTGCACTGCACACTGGATCGAGTCATACCAA
GAGCTCACTTTGTTCTattcaatgaatttttattacttcaaaaaactaaa
aactataTATCAGAGTGTGTTtaaattttaatcttttttaacTCAAGCAC
ATCTTAATTTATTGATTTTAGCATTTTATTTCTTCTAGAAATGacaaata
tttatttattttcaaccAGATTGATTAAAAGACACATATTCGCTTCAAAC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000992-exon-sc0000007-1491911889:384402..384528 | TCONS_00000992-exon-sc0000007-1491911889:384402..384528 | Clytia hemisphaerica | exon |
| TCONS_00000992-exon-sc0000007-1510915933:384402..384528 | TCONS_00000992-exon-sc0000007-1510915933:384402..384528 | Clytia hemisphaerica | exon |
| TCONS_00000992-exon-sc0000007-1575043694:384402..384528 | TCONS_00000992-exon-sc0000007-1575043694:384402..384528 | Clytia hemisphaerica | exon |
| TCONS_00000992-exon-sc0000007-1491911889:392838..393703 | TCONS_00000992-exon-sc0000007-1491911889:392838..393703 | Clytia hemisphaerica | exon |
| TCONS_00000992-exon-sc0000007-1510915933:392838..393703 | TCONS_00000992-exon-sc0000007-1510915933:392838..393703 | Clytia hemisphaerica | exon |
| TCONS_00000992-exon-sc0000007-1575043694:392838..393703 | TCONS_00000992-exon-sc0000007-1575043694:392838..393703 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:384402..393703 + |
Blast
BLAST of TCONS_00000992 vs. Swiss-Prot (Human)
Match: RAB28 (Ras-related protein Rab-28 OS=Homo sapiens GN=RAB28 PE=1 SV=2) HSP 1 Score: 294.278 bits (752), Expect = 1.424e-98 Identity = 137/225 (60.89%), Postives = 178/225 (79.11%), Query Frame = 1
Query: 139 MSSSEDEDINEQQLKITLVGDGTAGKTSLCTRLAQENFDKQYKQTMGLDFFMKRFSLPGNTNVTLQVWDIGGQQIGGKMLDTYLYGANGILLVYDVTNHNSFENLQDWLEVIKQTYAKSEKKPYLGLIGNKKDLEHLRTVKREKHVEFAQENGMANFFLSAKSGDQVNFCFQKIAADILGIRLSKQEVEQSNRVIKADIVNYKEMATPALHTGSSHTKSSLCSIQ 813
MS SE+E ++QLKI ++GDG +GKTSL T AQE F KQYKQT+GLDFF++R +LPGN NVTLQ+WDIGGQ IGGKMLD Y+YGA G+LLVYD+TN+ SFENL+DW V+K+ +SE +P + L+GNK DLEH+RT+K EKH+ F QENG ++ F+SAK+GD V CFQK+AA+ILGI+L+K E+EQS RV+KADIVNY + P T + +SS+C++Q
Sbjct: 1 MSDSEEES-QDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNKAEIEQSQRVVKADIVNYNQ--EPMSRT-VNPPRSSMCAVQ 221
The following BLAST results are available for this feature:
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