Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000990
Unique NameTCONS_00000990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000990 ID=TCONS_00000990|Name=TCONS_00000990|organism=Clytia hemisphaerica|type=transcript|length=3243bp
TATCTATCTTAAGGATGTTGGATAATATctttatgaatttattttcagca
aaaataacAATGTGTTAATAAATATTATGTTTCATGACATTACATTATAA
GAAACTGTCATGGGAGGTGTTGTACCGAAAGGCAAAAATAATGATGAACT
AGTTGATAATTTGATTGAAGCGAAATATTTATCTGATCCACGAATATGTA
GGATCTTCAGGCAAGTTGATCGAGGAGATTTTTACCCTGGTGAATATTAT
GAAGATGCTTATCGAGATCAAGCCATGAAATCTGGTAACCTTCATCTGAG
TGCTCCTTGTATTTATTGTTCTGTTATGGAAAACATGGACTTGTATCCAG
GTCTGTCCTTTTTGAATATTGGAAGTGGTACAGGCTATCTTTCAACAATG
GTAGGCCAAGTGTTAGGACCATTTGACACGAATCATGGCATTGAACTTTT
TGAAGATGCTATAAACTATTCGCAATCTAACATCGAACGTTTTATGAAAT
ACAGTGATGGTTTTCAAGTGACACATTTTTGTAAACCTCGTATCGTGCAA
GGAAATGTACATTCTTTCGACATCACTTTTCGTCAGTACGACCGTGTGTA
CGTTGGTGCAAGACTGATGGATTTACATATGAAGGAGAAAATCAAAGAGT
TGGTCAAAGTTGGTGGTGTTCTTATCTTCCCAACTGGTGAAAATCTgatg
aaattcaacaaagtttcaGAGACAGAATGGGAAGAGAAGTCATTATTGAA
TGTTCAATTTTCTGATTTGATCGATGAAAAGCCTGGTGATACAAAAGATA
TCAGGATATATACACAACCACCAACACTGAAAGAACTTTCTCGTCAAATC
ATTCTACAAAGTGTCTTCACTTTGACCGCACCCGAAGATGAAATCTCCTT
CGCTCAACTAGATATTTTAGATGACTTACCATTACCTAGAATATTGATCA
AATATTTGCGATATTTTCGCGACGCCAACCACCCTAAgccagtttcattg
aaaaagcATCGAACATTTTCCAGCGATGAGGACTCTTTCAGTAGTGACGA
CggagatgatgatgatgatgaaaatggAGGCGGTGGTGGTGGCGGGGGTG
GTGGTAATAGAATACGATTTCGTATCATTATAAGGTGAGCGGTGAAAAAA
TTCCGAATAAAAAGTTTGCTACTCTATTGACTGGTGTACTAACTAATGTC
ACATTCTGACACGCACAAAATGATAACGAACTGCCCGGAATACGACTCGA
ATCTAGAAAAGGGTAGCCACTCTTCATTTCTCGTCGAACGCAGAAAATAC
TTGTATTTGAGTATATGTTAAAATTGACAGTTCCCGTCCAATATTCAATA
GTCATCATTAGTCATCATTTGATGGGACGGGGGATAACATCTTAAGCTGA
TTATCGTCGCTTTTTTGTTGGTGTTTTGTTTCGTTTTTAGGGATCATTGA
ATACTATTTACTAATGCTTACATGCTTTCCCCCATAATACaggttttaaa
gaaaaacactgAGATACATGATAATAAACATATCCTTTTAGTATTCCAAC
TAACTAATATATGAGCCATTTCTGCATCTATATAAAATATCCAGTGCTCA
AATATTAAGGAAAAAGCATAGCAAGGTTTCCATTTACTTTATGGTGCGAG
GTAATGCGGCATTTAGGTTTTGGGTTCTGATCCGATTTATTAGATTCCTC
TTTCAGTaatgtttttgtaaaaatgttgttttgcattttcacgaaatttt
taCTGTACCAATAcgctcttctcgagatgcataaatttattgttgtcctc
gttttcaacacatttcattgctatgaaattatacatttaaaccaatttaa
attcccaaaaggcaacaaaagtacttgaaattcaaaatgtctcatgaggt
gtgaacaacacaattatcattgtgaatatgtaattttatagcaataaaat
ctgtttgaaaacgagggcaacaataaatttatgcatctcgagaagagtgt
attaattTGAATTTAGGAGAAATAGGAGTTATAGTTAGGTTTCGAAATTC
AGGAGATATACTGTGAAATGCAATGTAGGGATTGGCTTTTCGACAATAGt
gttatttgaaattttctttaagcATTGACAATGTACAtagtaattttatt
tttttagacaGAAATTctcatatttatatattttcatgaaaagtaaattt
ttaacAGCCTGGGAAttcttataataagagtcatTACATTACAAGGTTCA
CCCTTACTCAAGTGAATGTACATATTGGCTGTTTACCTAACTTAAGTTAT
CAGATAGggaacttttaaaatattttttcatgtgtTACAATTTGCTAATT
CATATGCTAAAATATGACCTTATCCCTTACGCTAATTATCAATTTTAAGA
ATCCCACAGTAATGCGTGAAATTGTAAATTGTTTGACTCTTTTCAGAGAA
Agcccaaaaaactgttttttgtatttataattttttctttaaaaaaataa
ccgATCTAAAGTAGATCAACCCCTGTAAATAGATTTGACAAATCTTATAA
TTTATTATTTCTATGTTACATAAATCTTGTTTTGGACTAAACACCATGTG
CATAGGTTAATTttcattctcttctttttttccagaAGAATTACATGTAT
CAATCGAAATTCATGACAACATGAAATTAAATATCCATAGTTCATTATTT
TTGCAGAAGGTTGCGACAAAGAAGCCTCTGTATCATAGGTTGTCTTAACA
CTGTTAAAGTATTATTCGAAAAATACGACCAACCATATTTGTTCGATGTC
TGCAACAGAAGAATTCAAAAATctcgattttattttttcttgataTCAAC
AATTTCAATGTTCAGACTGTTGATTATTCTCTTTATGAGCGGTTGAAAGT
TGTTGTTGTGGTCTTGGATGTTAGTTCTTCGGTGATGATGGTCATGGTAT
TCATCATCATGGTGAGGATATCGGACTTGAAACATGGGAAGTTCTCTTTG
TGGTGGTGCGAATAAAGGTGTGTGGTATGACTGGTGCAAAGGTGTAGGGA
AAGTGTGCTCATGCTCGTAATACAAATCATCATCATGGTGATCATCGTTG
CCATGGTGAGATCCATGAAAACTTCCATGGTCAGTCGTCTGATGGTAATG
ATCACGTGCTGGATGGTCCAATTCATGGTGTTCGTATTGGTGAGGATTGT
GATGTTTTACGTATCTGTTGtgaagaaaaacaaatcaatcCCT
Run BLAST on NCBI

protein sequence of TCONS_00000990-protein

>TCONS_00000990-protein ID=TCONS_00000990-protein|Name=TCONS_00000990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MGGVVPKGKNNDELVDNLIEAKYLSDPRICRIFRQVDRGDFYPGEYYEDA
YRDQAMKSGNLHLSAPCIYCSVMENMDLYPGLSFLNIGSGTGYLSTMVGQ
VLGPFDTNHGIELFEDAINYSQSNIERFMKYSDGFQVTHFCKPRIVQGNV
HSFDITFRQYDRVYVGARLMDLHMKEKIKELVKVGGVLIFPTGENLMKFN
KVSETEWEEKSLLNVQFSDLIDEKPGDTKDIRIYTQPPTLKELSRQIILQ
SVFTLTAPEDEISFAQLDILDDLPLPRILIKYLRYFRDANHPKPVSLKKH
RTFSSDEDSFSSDDGDDDDDENGGGGGGGGGGNRIRFRIIIR
Run BLAST on NCBI

transcript from alignment at sc0000007:343603..347532+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000990 ID=TCONS_00000990|Name=TCONS_00000990|organism=Clytia hemisphaerica|type=transcript|length=3930bp|location=Sequence derived from alignment at sc0000007:343603..347532+ (Clytia hemisphaerica)
TATCTATCTTAAGGATGTTGGATAATATctttatgaatttattttcagca aaaataacAATGTGTTAATAAATATTATGTTTCATGACATTACATTATAA GAAACTGTCATGGGAGGTGTTGTACCGAAAGGCAAAAATAATGATGAACT AGTTGATAATTTGATTGAAGCGAAATATTTATCTGATCCACGAATATGTA GGATCTTCAGGCAAGTTGATCGAGGAGATTTTTACCCTGGTGAATATTAT GAAGATGCTTATCGAGATCAAGCCATGAAATCTGGTAACCTTCATCTGAG TGCTCCTTGTATTTATTGTTCTGTTATGGAAAACATGGACTTGTATCCAG GTAATgcttctttgtatttttttatttattgctgTCCATTCTCAATGTTT TATATTTAGCTTGTTATCGCTTTTAATGTTGGTCAAATATCaacgaaaaa aggaaaacattgaCAGACTGGGGTAAAGTAATGATAACGATATTTTAATC CTTTTTAATGGCTACCATTAATTTTTACGATCAAGACTGAAAAATCTAAT TACTTTGAACATCTAAACCTTCCGAAACTTCCCAAGATCCATATACATCA TCATTGCCTCAAAATCTTTCGTCATATCGCGCTTGTCATAAAGTATGTTT TGCTGTTCTATTTACAGGTCTGTCCTTTTTGAATATTGGAAGTGGTACAG GCTATCTTTCAACAATGGTAGGCCAAGTGTTAGGACCATTTGACACGAAT CATGGCATTGAACTTTTTGAAGATGCTATAAACTATTCGCAATCTAACAT CGAACGTTTTATGAAATACAGTGATGGTTTTCAAGTGACACATTTTTGTA AACCTCGTATCGTGCAAGGAAATGTACATTCTTTCGACATCACTTTTCGT CAGTACGACCGTGTGTACGTTGGTGCAAGACTGATGGATTTACATATGAA GGAGAAAATCAAAGAGTTGGTCAAAGTTGGTGGTGTTCTTATCTTCCCAA CTGGTGAAAATGTAAGTCATGTTGCTCCTCgttctatttcaaattatttt caaatttcacaaaaatgtaacaGTTACAACAGCTATTAAAGAAATGTTCA AACCGGTTCAAACCCCCAAACATATCTTGATATTTAAAGCGAGAACTATT GACGCGAAgagtttgttttcttttaccTGAAACTATGAAGCATTATATTC ATTGATTTCAGCTgatgaaattcaacaaagtttcaGAGACAGAATGGGAA GAGAAGTCATTATTGAATGTTCAATTTTCTGATTTGATCGATGAAAAGCC TGGTGATACAAAAGATATCAGGATATGTAAGCTGTCTTGAAAATTGCTCT TGCTTTATCTTGGTTCtatgattttgtttttcttttacagTTGATCTTTT GCTGCATTTCGGTCCTATTCTCAtcatcacttttaaaaattttatccGGC TTCTTTGCATCACTATCTAAACACTAAGATGATCTTTCTTCTTTAGATAC ACAACCACCAACACTGAAAGAACTTTCTCGTCAAATCATTCTACAAAGTG TCTTCACTTTGACCGCACCCGAAGATGAAATCTCCTTCGCTCAACTAGAT ATTTTAGATGACTTACCATTACCTAGAATATTGATCAAATATTTGCGATA TTTTCGCGACGCCAACCACCCTAAgccagtttcattgaaaaagcATCGAA CATTTTCCAGCGATGAGGACTCTTTCAGTAGTGACGACggagatgatgat gatgatgaaaatggAGGCGGTGGTGGTGGCGGGGGTGGTGGTAATAGAAT ACGATTTCGTATCATTATAAGGTGAGCGGTGAAAAAATTCCGAATAAAAA GTTTGCTACTCTATTGACTGGTGTACTAACTAATGTCACATTCTGACACG CACAAAATGATAACGAACTGCCCGGAATACGACTCGAATCTAGAAAAGGG TAGCCACTCTTCATTTCTCGTCGAACGCAGAAAATACTTGTATTTGAGTA TATGTTAAAATTGACAGTTCCCGTCCAATATTCAATAGTCATCATTAGTC ATCATTTGATGGGACGGGGGATAACATCTTAAGCTGATTATCGTCGCTTT TTTGTTGGTGTTTTGTTTCGTTTTTAGGGATCATTGAATACTATTTACTA ATGCTTACATGCTTTCCCCCATAATACaggttttaaagaaaaacactgAG ATACATGATAATAAACATATCCTTTTAGTATTCCAACTAACTAATATATG AGCCATTTCTGCATCTATATAAAATATCCAGTGCTCAAATATTAAGGAAA AAGCATAGCAAGGTTTCCATTTACTTTATGGTGCGAGGTAATGCGGCATT TAGGTTTTGGGTTCTGATCCGATTTATTAGATTCCTCTTTCAGTaatgtt tttgtaaaaatgttgttttgcattttcacgaaatttttaCTGTACCAATA cgctcttctcgagatgcataaatttattgttgtcctcgttttcaacacat ttcattgctatgaaattatacatttaaaccaatttaaattcccaaaaggc aacaaaagtacttgaaattcaaaatgtctcatgaggtgtgaacaacacaa ttatcattgtgaatatgtaattttatagcaataaaatctgtttgaaaacg agggcaacaataaatttatgcatctcgagaagagtgtattaattTGAATT TAGGAGAAATAGGAGTTATAGTTAGGTTTCGAAATTCAGGAGATATACTG TGAAATGCAATGTAGGGATTGGCTTTTCGACAATAGtgttatttgaaatt ttctttaagcATTGACAATGTACAtagtaattttatttttttagacaGAA ATTctcatatttatatattttcatgaaaagtaaatttttaacAGCCTGGG AAttcttataataagagtcatTACATTACAAGGTTCACCCTTACTCAAGT GAATGTACATATTGGCTGTTTACCTAACTTAAGTTATCAGATAGggaact tttaaaatattttttcatgtgtTACAATTTGCTAATTCATATGCTAAAAT ATGACCTTATCCCTTACGCTAATTATCAATTTTAAGAATCCCACAGTAAT GCGTGAAATTGTAAATTGTTTGACTCTTTTCAGAGAAAgcccaaaaaact gttttttgtatttataattttttctttaaaaaaataaccgATCTAAAGTA GATCAACCCCTGTAAATAGATTTGACAAATCTTATAATTTATTATTTCTA TGTTACATAAATCTTGTTTTGGACTAAACACCATGTGCATAGGTTAATTt tcattctcttctttttttccagaAGAATTACATGTATCAATCGAAATTCA TGACAACATGAAATTAAATATCCATAGTTCATTATTTTTGCAGAAGGTTG CGACAAAGAAGCCTCTGTATCATAGGTTGTCTTAACACTGTTAAAGTATT ATTCGAAAAATACGACCAACCATATTTGTTCGATGTCTGCAACAGAAGAA TTCAAAAATctcgattttattttttcttgataTCAACAATTTCAATGTTC AGACTGTTGATTATTCTCTTTATGAGCGGTTGAAAGTTGTTGTTGTGGTC TTGGATGTTAGTTCTTCGGTGATGATGGTCATGGTATTCATCATCATGGT GAGGATATCGGACTTGAAACATGGGAAGTTCTCTTTGTGGTGGTGCGAAT AAAGGTGTGTGGTATGACTGGTGCAAAGGTGTAGGGAAAGTGTGCTCATG CTCGTAATACAAATCATCATCATGGTGATCATCGTTGCCATGGTGAGATC CATGAAAACTTCCATGGTCAGTCGTCTGATGGTAATGATCACGTGCTGGA TGGTCCAATTCATGGTGTTCGTATTGGTGAGGATTGTGATGTTTTACGTA TCTGTTGtgaagaaaaacaaatcaatcCCT

Coding sequence (CDS) from alignment at sc0000007:343603..347532+

>TCONS_00000990 ID=TCONS_00000990|Name=TCONS_00000990|organism=Clytia hemisphaerica|type=CDS|length=4116bp|location=Sequence derived from alignment at sc0000007:343603..347532+ (Clytia hemisphaerica)
ATGGGAGGTGTTGTACCGAAAGGCAAAAATAATGATGAACTAGTTGATAA
TTTGATTGAAGCGAAATATTTATCTGATCCACGAATATGTAGGATCTTCA
GGCAAGTTGATCGAGGAGATTTTTACCCTGGTGAATATTATGAAGATGCT
TATCGAGATCAAGCCATGAAATCTGGTAACCTTCATCTGAGTGCTCCTTG
TATTTATTGTTCTGTTATGGAAAACATGGACTTGTATCCAGGTCTGTCCT
TTTTGAATATTGGAAGTGGTACAGGCTATCTTTCAACAATGGTAGGCCAA
GTGTTAGGACCATTTGACACGAATCATGGCATTGAACTTTTTGAAGATGC
TATAAACTATTCGCAATCTAACATCGAACGTTTTATGAAATACAGTGATG
GTTTTCAAGTGACACATTTTTGTAAACCTCGTATCGTGCAAGGAAATGTA
CATTCTTTCGACATCACTTTTCGTCAGTACGACCGTGTGTACGTTGGTGC
AAGACTGATGGATTTACATATGAAGGAGAAAATCAAAGAGTTGGTCAAAG
TTGGTGGTGTTCTTATCTTCCCAACTGGTGAAAATCTgatgaaattcaac
aaagtttcaGAGACAGAATGGGAAGAGAAGTCATTATTGAATGTTCAATT
TTCTGATTTGATCGATGAAAAGCCTGGTGATACAAAAGATATCAGGATAT
ATACACAACCACCAACACTGAAAGAACTTTCTCGTCAAATCATTCTACAA
AGTGTCTTCACTTTGACCGCACCCGAAGATGAAATCTCCTTCGCTCAACT
AGATATTTTAGATGACTTACCATTACCTAGAATATTGATCAAATATTTGC
GATATTTTCGCGACGCCAACCACCCTAAgccagtttcattgaaaaagcAT
CGAACATTTTCCAGCGATGAGGACTCTTTCAGTAGTGACGACggagatga
tgatgatgatgaaaatggAGGCGGTGGTGGTGGCGGGGGTGGTGGTAATA
GAATACGATTTCGTATCATTATAAGGTGAATGGGAGGTGTTGTACCGAAA
GGCAAAAATAATGATGAACTAGTTGATAATTTGATTGAAGCGAAATATTT
ATCTGATCCACGAATATGTAGGATCTTCAGGCAAGTTGATCGAGGAGATT
TTTACCCTGGTGAATATTATGAAGATGCTTATCGAGATCAAGCCATGAAA
TCTGGTAACCTTCATCTGAGTGCTCCTTGTATTTATTGTTCTGTTATGGA
AAACATGGACTTGTATCCAGGTCTGTCCTTTTTGAATATTGGAAGTGGTA
CAGGCTATCTTTCAACAATGGTAGGCCAAGTGTTAGGACCATTTGACACG
AATCATGGCATTGAACTTTTTGAAGATGCTATAAACTATTCGCAATCTAA
CATCGAACGTTTTATGAAATACAGTGATGGTTTTCAAGTGACACATTTTT
GTAAACCTCGTATCGTGCAAGGAAATGTACATTCTTTCGACATCACTTTT
CGTCAGTACGACCGTGTGTACGTTGGTGCAAGACTGATGGATTTACATAT
GAAGGAGAAAATCAAAGAGTTGGTCAAAGTTGGTGGTGTTCTTATCTTCC
CAACTGGTGAAAATCTgatgaaattcaacaaagtttcaGAGACAGAATGG
GAAGAGAAGTCATTATTGAATGTTCAATTTTCTGATTTGATCGATGAAAA
GCCTGGTGATACAAAAGATATCAGGATATATACACAACCACCAACACTGA
AAGAACTTTCTCGTCAAATCATTCTACAAAGTGTCTTCACTTTGACCGCA
CCCGAAGATGAAATCTCCTTCGCTCAACTAGATATTTTAGATGACTTACC
ATTACCTAGAATATTGATCAAATATTTGCGATATTTTCGCGACGCCAACC
ACCCTAAgccagtttcattgaaaaagcATCGAACATTTTCCAGCGATGAG
GACTCTTTCAGTAGTGACGACggagatgatgatgatgatgaaaatggAGG
CGGTGGTGGTGGCGGGGGTGGTGGTAATAGAATACGATTTCGTATCATTA
TAAGGTGAATGGGAGGTGTTGTACCGAAAGGCAAAAATAATGATGAACTA
GTTGATAATTTGATTGAAGCGAAATATTTATCTGATCCACGAATATGTAG
GATCTTCAGGCAAGTTGATCGAGGAGATTTTTACCCTGGTGAATATTATG
AAGATGCTTATCGAGATCAAGCCATGAAATCTGGTAACCTTCATCTGAGT
GCTCCTTGTATTTATTGTTCTGTTATGGAAAACATGGACTTGTATCCAGG
TCTGTCCTTTTTGAATATTGGAAGTGGTACAGGCTATCTTTCAACAATGG
TAGGCCAAGTGTTAGGACCATTTGACACGAATCATGGCATTGAACTTTTT
GAAGATGCTATAAACTATTCGCAATCTAACATCGAACGTTTTATGAAATA
CAGTGATGGTTTTCAAGTGACACATTTTTGTAAACCTCGTATCGTGCAAG
GAAATGTACATTCTTTCGACATCACTTTTCGTCAGTACGACCGTGTGTAC
GTTGGTGCAAGACTGATGGATTTACATATGAAGGAGAAAATCAAAGAGTT
GGTCAAAGTTGGTGGTGTTCTTATCTTCCCAACTGGTGAAAATCTgatga
aattcaacaaagtttcaGAGACAGAATGGGAAGAGAAGTCATTATTGAAT
GTTCAATTTTCTGATTTGATCGATGAAAAGCCTGGTGATACAAAAGATAT
CAGGATATATACACAACCACCAACACTGAAAGAACTTTCTCGTCAAATCA
TTCTACAAAGTGTCTTCACTTTGACCGCACCCGAAGATGAAATCTCCTTC
GCTCAACTAGATATTTTAGATGACTTACCATTACCTAGAATATTGATCAA
ATATTTGCGATATTTTCGCGACGCCAACCACCCTAAgccagtttcattga
aaaagcATCGAACATTTTCCAGCGATGAGGACTCTTTCAGTAGTGACGAC
ggagatgatgatgatgatgaaaatggAGGCGGTGGTGGTGGCGGGGGTGG
TGGTAATAGAATACGATTTCGTATCATTATAAGGTGAATGGGAGGTGTTG
TACCGAAAGGCAAAAATAATGATGAACTAGTTGATAATTTGATTGAAGCG
AAATATTTATCTGATCCACGAATATGTAGGATCTTCAGGCAAGTTGATCG
AGGAGATTTTTACCCTGGTGAATATTATGAAGATGCTTATCGAGATCAAG
CCATGAAATCTGGTAACCTTCATCTGAGTGCTCCTTGTATTTATTGTTCT
GTTATGGAAAACATGGACTTGTATCCAGGTCTGTCCTTTTTGAATATTGG
AAGTGGTACAGGCTATCTTTCAACAATGGTAGGCCAAGTGTTAGGACCAT
TTGACACGAATCATGGCATTGAACTTTTTGAAGATGCTATAAACTATTCG
CAATCTAACATCGAACGTTTTATGAAATACAGTGATGGTTTTCAAGTGAC
ACATTTTTGTAAACCTCGTATCGTGCAAGGAAATGTACATTCTTTCGACA
TCACTTTTCGTCAGTACGACCGTGTGTACGTTGGTGCAAGACTGATGGAT
TTACATATGAAGGAGAAAATCAAAGAGTTGGTCAAAGTTGGTGGTGTTCT
TATCTTCCCAACTGGTGAAAATCTgatgaaattcaacaaagtttcaGAGA
CAGAATGGGAAGAGAAGTCATTATTGAATGTTCAATTTTCTGATTTGATC
GATGAAAAGCCTGGTGATACAAAAGATATCAGGATATATACACAACCACC
AACACTGAAAGAACTTTCTCGTCAAATCATTCTACAAAGTGTCTTCACTT
TGACCGCACCCGAAGATGAAATCTCCTTCGCTCAACTAGATATTTTAGAT
GACTTACCATTACCTAGAATATTGATCAAATATTTGCGATATTTTCGCGA
CGCCAACCACCCTAAgccagtttcattgaaaaagcATCGAACATTTTCCA
GCGATGAGGACTCTTTCAGTAGTGACGACggagatgatgatgatgatgaa
aatggAGGCGGTGGTGGTGGCGGGGGTGGTGGTAATAGAATACGATTTCG
TATCATTATAAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000576XLOC_000576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000990-exon-sc0000007-1491911889:343603..343952TCONS_00000990-exon-sc0000007-1491911889:343603..343952Clytia hemisphaericaexon
TCONS_00000990-exon-sc0000007-1510915933:343603..343952TCONS_00000990-exon-sc0000007-1510915933:343603..343952Clytia hemisphaericaexon
TCONS_00000990-exon-sc0000007-1575043694:343603..343952TCONS_00000990-exon-sc0000007-1575043694:343603..343952Clytia hemisphaericaexon
TCONS_00000990-exon-sc0000007-1491911889:344270..344613TCONS_00000990-exon-sc0000007-1491911889:344270..344613Clytia hemisphaericaexon
TCONS_00000990-exon-sc0000007-1510915933:344270..344613TCONS_00000990-exon-sc0000007-1510915933:344270..344613Clytia hemisphaericaexon
TCONS_00000990-exon-sc0000007-1575043694:344270..344613TCONS_00000990-exon-sc0000007-1575043694:344270..344613Clytia hemisphaericaexon
TCONS_00000990-exon-sc0000007-1491911889:344814..344928TCONS_00000990-exon-sc0000007-1491911889:344814..344928Clytia hemisphaericaexon
TCONS_00000990-exon-sc0000007-1510915933:344814..344928TCONS_00000990-exon-sc0000007-1510915933:344814..344928Clytia hemisphaericaexon
TCONS_00000990-exon-sc0000007-1575043694:344814..344928TCONS_00000990-exon-sc0000007-1575043694:344814..344928Clytia hemisphaericaexon
TCONS_00000990-exon-sc0000007-1491911889:345099..347532TCONS_00000990-exon-sc0000007-1491911889:345099..347532Clytia hemisphaericaexon
TCONS_00000990-exon-sc0000007-1510915933:345099..347532TCONS_00000990-exon-sc0000007-1510915933:345099..347532Clytia hemisphaericaexon
TCONS_00000990-exon-sc0000007-1575043694:345099..347532TCONS_00000990-exon-sc0000007-1575043694:345099..347532Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000990-proteinTCONS_00000990-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:343603..347532 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.992719 0.959039 0.482825 0.372066 5.16456 3.4508 10.1709 9.90865 9.31456 8.52541 6.85914 7.72129 4.08716 3.30042 2.29663 2.82545 2.47707 3.65722 3.08144 2.81588 4.23033 2.91059 3.12192 3.44782 5.23425 5.14424 2.10911 1.80634 1.57954 1.36132
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001496SOCS_box
IPR029063SAM-dependent_MTases
Vocabulary: Biological Process
TermDefinition
GO:0035556intracellular signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035556 intracellular signal transduction
Blast
BLAST of TCONS_00000990 vs. Swiss-Prot (Human)
Match: PCMD2 (Protein-L-isoaspartate O-methyltransferase domain-containing protein 2 OS=Homo sapiens GN=PCMTD2 PE=2 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 1.734e-70
Identity = 119/256 (46.48%), Postives = 163/256 (63.67%), Query Frame = 2
Query:  110 MGGVVPKGKNNDELVDNLIEAKYLSDPRICRIFRQVDRGDFYPGEYYEDAYRDQAMKSGNLHLSAPCIYCSVMENMDLYPGLSFLNIGSGTGYLSTMVGQVLGPFDTNHGIELFEDAINYSQSNIERFMKYSDGFQVTHFCKPRIVQGNVHSFDITFRQYDRVYVGARLMDLHMKEKIKELVKVGGVLIFPTGENLMKFNKVSETEWEEKSLLNVQFSDLIDEKPGDTKDIRIYTQPP----TLKELSRQIILQSV 865
            MGG V  G++NDEL+DNL EA+Y+    + + FR +DR D+Y  E+ E+AY+D A K GN+HLSAPCIY  VME +DL PGLSFLN+GSGTGYLS+MVG +LGPF  NHG+EL  D I Y++  ++ F++ SD F    FC+P  V GN         QYDRVY GA +   H +E +K L+KVGG+L+ P  E L K  +   + WE K +L V F+ LI     ++   R+   PP    +L++L+R  I  ++
Sbjct:    1 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGNIHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEYAKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEH-EEYMKNLLKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAPLIQPCHSESGKSRLVQLPPVAVRSLQDLARIAIRGTI 255          
The following BLAST results are available for this feature:
BLAST of TCONS_00000990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCMD21.734e-7046.48Protein-L-isoaspartate O-methyltransferase domain-... [more]
back to top