TCONS_00000979 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000979
Unique Name	TCONS_00000979
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3482

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000007:243363..258453+

transcript sequence

>TCONS_00000979 ID=TCONS_00000979|Name=TCONS_00000979|organism=Clytia hemisphaerica|type=transcript|length=3482bp
aaCATAATTGTCTGTTCATTGGATATTGATTTCAGACTCAAAGTGATAGA
AAATGTTTGGAAGTGGAAAGAAAGGCAAATCAAGAGCCAGCAAATCTCCA
AATGATGATATGTCCAATGTGATGGGTTTAGGTGGCATGGATTctgatga
tgaagatgaatCAAGTCTTTTGGCAGAACTTGCTGCTCTTGAAGGGAGAC
CTGTAGCTCCCAAAAAAGCTAAACCCAAAAAAGCCTTGGTGAGCATGGAT
GAGATTGACCGTGAAGCAGAAGCAGGTATGGCTGATATTCATGATGGTGA
GATCAACAATGaagatgattttgatgaaaatgatttgcTGGCTGAATTAA
ATGATATAGTAAGCGATGAAGAAGATAAACCTCCGCCACCCAAAGTAGAG
AAGCCTGCAGCAGCTTCATCTGGTGGGATGCAGAAAACGCTAACAGATCG
TCGTGAAATCTATGTACAGGCTATCGCTAATGCAAAAGCAGAAGGTGCTT
CCTCGAAAGTCCGAAGATTCGATCGTGGTCTGAAGGAAATAGAAAGATTG
ATCAAGAGCGTTTCGAAAGGTGCCACGATTTCTGAAGATGATATTCCACC
TCCAGTAGTTGTCAAATCCAGTTCGCCCATTAACCCTAAAACACAAACac
tacccccacctgaaaaaccAGGACGGGCCACCGTTATCACGCCCGTTGAA
CCCTTCACTGCACCAGTTGAAACTCCACCCACCCGCACACCGGAACCCCA
ACCAGTCACTGCACCCACACCTCAACCACGCCCCACAGCTACACCACCAG
TTCAACCAACAACTCAAgacaatgaaaaattgaatcttCTTTTGGAAAGA
CAAAAGCAATTCAAAGTTTTAGCATTACAAATGAAACAAAGAGGAGATAT
TGATGGTGCCAAGAAAAATTTGGCAATCGCAAAACAATTCGACAGTGTGA
TTGCTGCAGTGAAAGAAGGGAAGGAGGTTGACCTCTCAAGAATGCCACAA
GTTCCCTCAGTATCTGAACCGTCGCCTGCGGCACCACCACAACAACCACA
AGCTGCTAGCTCCCCACCCAAACAGCCAGTAGCACCACCATCATCATCGT
CTACACCAGGTGCTCCTTCCACTGTCTTAGAAGCTTTAGAGCAGCGTTTG
GAGAAATATCGTGAAACTGGTGCTAAAGCTAAAGAGGAGGGGAACAGCGG
CAAAGTGAGACGTATGGGTCGAATTGTAAAGCAATTCGAAGCGGCGATAA
AAGATTACAAAGCGAACAAACCAGTAGATTTCAACGAATTACCATGTCCC
CCAGGCTTCGGTCCAATCCCTGGTGAAACACAAGCAGAAGAACCTGGCGA
CCCTCAAGAAATGGCTCAAATGTTGATAAACGCACCTTTAGACGGACCTG
AAGAAGATGACACGCCCAAACCACCATCGTCCAAATCTGTTGCACCCGCC
CCTTCACGCCCTGCTGTTGTCAACCCTGGAGTATCAGGAAGTCGCAACGA
GAACCAGTATCAATTTCTTGTCACTCGTCAAAAGGAATTCAAGAAAGCAG
CTCTTGAAGCTAAACATGCAGGCAACATTGATCAAGCTAGAGATTATCTC
CGAAAAGCAAAGGGATTGGATCCGATGATCGAAGCTGCATCCAGTGGACT
TGGTGTGGATCTCACAACAGTTCCATCGGTGCGACCGACCAAAGGAGCGT
CAACACAACAAGGCTCATCACCTACTGGTTTAAGAGAAGAAATCAAGATG
ACTGGAACGAACAATGAAAACTATGTGTTCGTTGAAACCGCTCTTCAAAG
ACAAATTGAGGCCGCAGAAAAGAACACAGCTCATTACAAATTGATGGGAA
ATTTAGATGCTGCCAAAAACTTTGAAATGTTGTTAAAGAACTCTCAGAAA
GACATAATGACGCTACAACAATACAAAGCAAATAAATCGCCCGTTCCCAA
ATGCTTCTACGTCAAAAAGACCTTCCCCGTTACAAAGTCCAATCCACATT
TGAGTGATTCTGAATTAGAGATCACCGTGGTTCGATGTTTGAACGTACCG
CTACAACAAGgctACCAACCAAAAGATATGTATACTTATGTCACTTGTGA
GATGGCCTATCCTACGGAGAAGCCGCAAACTGCAACAACGACCACCATCA
AAGAAACCATAAACCCTGaataCAACGGTGTTTTCAAAGTGCTTATTGAT
CGCAAGCAAAGTGCTTTTAAAAGGTTTTGTAGGCGTGGCGTGGTCAACTT
CAAATTATTTTATGTCAGAGGCTTTCTGAAGAGTGACAAAGCAATCGGAC
AAGCGAGCGTCAAATTAACAGGATTCGCCAACAAATGTGAAATCCACGAA
TGTGTTGATATCGTCGACCTGGAGAAAGGTCGTAAAGCAATTGGTGGGAA
GATAGAAATCGTGCTCAAAATACGCGAACCTTTTGTAGACAAAGATACAG
AGATTGTCAACGAGAAATGGTTGATATTAGATGCACATCTGCGCAAACTC
GATATGaaaacccCATCAGCAATTCCTCAAGGAAAAGCCGTTAGCGCATA
CGAAAGTTTAGAAGTCATGAAATCTGAGAAATCGCTCTTTGAACGACAGG
TAGCTGCTTACAAACAGCAAGGCAAACAACCTCCAACAGAGTTATTACAT
AAAATCAAATCTCACAACGAAAGTATGATAGCCATCCAAAATCGCCTGAA
ACAAGGAGGAAAGCCAGCTGTTATAGAATATTTGAAGAATTTGGGTCGTG
GAGTAGAAGTGGAGATGAAGAACGCGCAAGTTGCTGCTAAAAAGAACGAT
GACAAAActgcaaaaaattgtttggttaaGAAGAAATTATTGGACAAAGa
gATTGGAGTATTGAAACAAAGGCTGGGACTTTGATGAGATAAGTGGCTTA
AAGTTATTAccaatttatttttatacattTCTAGGAAAATacgaaatatt
aaaaactaAAATGTATTATTTATGTACAAACTTGAAATAAGatcggaaat
tttcaaaacgtatatggAATATTATCGTAAACTACAGAATATGCATCGAA
GATTTacaaaaatgttagattctGGCTGCCCGGTACACAAAAAACTCTGT
GAAATCTATTTTAAGATGCTCGGACCaatgaaaaatcatgaaaatagtAA
CACGGTTTAGCAGTTGATACGTTGATGAATTTTTCAGCAAATTTCTTCGC
CCAACGTTCCAAATTTTATGGGTTATGCTTTCACAGTATTGTCAACATAT
TAATAATTCTTTACTCCACACACGACGTTTCATTTTCCAATTTGGTATTA
TATTTGTTGCCAGTTTTTTCTAAtcatttgtttatgtttattgTATTGTA
ATTATCAATTGTTTATATGATATTGGAATAAATTTTCCGTCCGAACGTCT
TTTGTAGCGGACGGTAGTTATCACACATCGTCCCTTCTCGATTCACTTTG
GTCGATCGCAACTGCCGAAATTCTTGCAACTG

Run BLAST on NCBI

transcript from alignment at sc0000007:243363..258453+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000979 ID=TCONS_00000979|Name=TCONS_00000979|organism=Clytia hemisphaerica|type=transcript|length=15091bp|location=Sequence derived from alignment at sc0000007:243363..258453+ (Clytia hemisphaerica)
aaCATAATTGTCTGTTCATTGGATATTGATTTCAGACTCAAAGTGATAGA
AAATGTTTGGAAGTGGAAAGAAAGGCAAATCAAGAGCCAGCAAATCTCCA
AATGATGATATGTCCAATGTGGTATGTTACTCCataaaaatgtgattttt
ttgccctttttgtcTAATATTTGATTGTCTATATTCGGATCACCCTAAGT
TAGAAGAGAAGCAGAGTAAATTGGGTTAAGATAAAACgggtgaaaaaaat
taaagtggGAATTAGGGTATATGcattcatttttcatattttgttgcTGT
CATTTTTCAGATGGGTTTAGGTGGCATGGATTctgatgatgaagatgaat
CAAGTCTTTTGGCAGAACTTGCTGCTCTTGAAGGGAGACCTGTAGCTCCC
AAAAAAGCTAAACCCAAAAAAGGTAATAATTATAAAACAATGAAGATAGC
TGAAAGCTATTTcatcaagattttttcaatatttcatttttataacaTTA
TAATGCTATCTACACCGATTAAAAGTTTCTTAAATCTTAATAATATATAG
CCCATTTTATCGTACTCACACAGCCTTGGTGAGCATGGATGAGATTGACC
GTGAAGCAGAAGCAGGTATGGCTGATATTCATGATGGTGAGATCAACAAT
GaagatgattttgatgaaaatgatttgcTGGTAAGATGCCTCAGTTCTGC
TCagttttctttttattagaTTGTAGTTCACTCCCAGAAAATCCCCAATG
GTGATTTGCCCCCTTGAAAATATCCACAAGAAAATTCCCTCTGTTGACCA
ACTATGggtttttcccaaaaaatttttttcattctcgTTCAGAGTTGGTG
CCAATTATTGAGTGCGTAAGGTCTTTAGAAATTAGCTATTAGAGGAAATA
TTTGTTTCAACAGCAAATGAATGTACCTAGGATCCTGGACTTTCTGAGTA
ATAGACTTTTTTGGGTGttttactttaggcgtacaaactttcgcgagcag
aaactttcgcgaggacgaaaaatcgcgaaattcacgacatttactttcgc
gaatttaacggaaaaatattTTTCGCGAGCATAAACattcgcgaatcaag
acgtaaaattgagaattttcacacgaaaaaatggcttagagacacaaata
cttcttgggttggcttgaaacatttgtcctttgacttattagtcttttag
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttctgc
tcgcgaaagtttctacgcctaaagtattctcctcaaacaaatattttagt
aaattcttgaaaaatacttcaaataaggcgaattttctttcttttgaaaa
tctatCGTGGCGAATTCAGGGGAAATCTTCTGCAGAATTTTCTGGAGCAT
TTTCTGGATGGAACTCTTGGTCTTTCTCTACATTTGATGAGTTCAACTTT
CTTGGTAAAAGTaggtattccttttgcagccatttaatttatttttgcgc
atcttttttttgttttcctcaGGCTGAATTAAATGATATAGTAAGCGATG
AAGAAGATAAACCTCCGCCACCCAAAGTAGAGAAGGTAAAGATTTATGCC
ATTAGTTTTTAAAGTTCTTTCGTCTCAGTCAgataaaaatatgatttttg
tCGCAAGATTCAGTAAAATTGTTTATAAACATCGAATAAATTTGGTTGTT
GTGTAAAGCAAttttctgtctcaaaattctaCTATAAGCACACAAATATT
TTAAGAGATGAAATTTAGTCTGGAAGAAATATCACCCCTGCTAGTTTTCT
TTTGTGAAGTGAAGAATGTAGGAGATTGAATAAAGTTTACAACTTTCTGT
ATTTAGCCTGCAGCAGCTTCATCTGGTGGGATGCAGAAAACGCTAACAGA
TCGTCGTGAAATCTATGTACAGGCTATCGCTAATGCAAAAGCAGAAGGTG
CTTCCTCGAAAGTCCGAAGATTCGATCGTGGTCTGAAGGTTTGTTTGATA
TTCTTTGAAATGAGTATTGAATCCAGTGACAAGAGCtgatttaacatttt
ttattattatgttTCTATGATTTTCCTAGGTAtttgcagattttcatgat
CGGATCTGTTctaacattttgattttgtttcaaATCCAATTTCGCATTTT
GTAGGAAATAGAAAGATTGATCAAGAGCGTTTCGAAAGGTGCCACGATTT
CTGAAGATGATATTCCACCTCCAGTAGTTGTCAAATCCAGTTCGCCCATT
AACCCTAAAACACAAACactacccccacctgaaaaaccAGGACGGGCCAC
CGTTATCACGCCCGTTGAACCCTTCACTGCACCAGTTGAAACTCCACCCA
CCCGCACACCGGAACCCCAACCAGTCACTGCACCCACACCTCAACCACGC
CCCACAGCTACACCACCAGTTCAACCAACAACTCAAgacaatgaaaaatt
gaatcttCTTTTGGAAAGACAAAAGCAATTCAAAGTTTTAGCATTACAAA
TGAAACAAAGAGGAGATATTGATGGTGCCAAGAAAAATTTGGCAATCGCA
AAAGTAAGTGGGTATATTTTTAGGAATTCCCTGACTTCAAATCAAATAAC
TTTCAAATCTCAATCTCAACCAATGAATTGATATTTTAAGTTCTTATATT
TTCTCATCTTTAGCAATTCGACAGTGTGATTGCTGCAGTGAAAGAAGGGA
AGGAGGTTGACCTCTCAAGAATGCCACAAGTTCCCTCAGGTGAGAAAATC
GTTACTTGGGTGACGGCGTTGTTTATTAGGTAATAGTAAGTAATAGTTGT
AATAttctatttgttttattttcatcataGTATCTGAACCGTCGCCTGCG
GCACCACCACAACAACCACAAGCTGCTAGCTCCCCACCCAAACAGCCAGT
AGCACCACCATCATCATCGTCTACACCAGGTGCTCCTTCCACTGTCTTAG
AAGCTTTAGAGCAGCGTTTGGAGAAATATCGTGAAACTGGTGCTAAAGCT
AAAGAGGAGGGGAACAGCGGCAAAGTGAGACGTATGGGTCGAATTGTAAA
GGTAGTTATTAGCCTGTTTAGATCTTTCATCATCTATGATACAAACTTCA
TTTTTGAATTTGCTTGTAATTTCAATTATATCTTCTCACGCTTGTATTTC
CAAGTCATATGAACaccaaaaacattattttgtgCATTGTATTAGATAAT
ATGTaatcttgtttttctttcttgttttttcagCAATTCGAAGCGGCGAT
AAAAGATTACAAAGCGAACAAACCAGTAGATTTCAACGAATTACCATGTC
CCCCAGGCTTCGGTCCAATCCCTGGTGAAACACAAGCAGAAGAACCTGGC
GACCCTCAAGAAATGGCTCAAATGGTGAGACATGATCATGTTCTGTTTAT
TACCTTCAGTAGAATGATTTACAcgaggattatatttcgcgagtTTCACG
ATTTTCCCCGAAAATTCGTGAAATTTAATGCTCGCAAGAATTTTTTAACC
aagtttttttcccaaaaacctTCTTTGATTCTTTTCCAAAACCTCTATGA
AAAATGGTTTAGATGGGACGATGGCTTCGTTTCATTACATTATTAATACT
ATGCTACACTGTGGCTATTCAACAAGAATTTCTGAACGACCACACTATCA
TTCGTTTGAAGAGATTCaactttgaaataaatattCTCGCTTTTTCCACA
GTTGATAAACGCACCTTTAGACGGACCTGAAGAAGATGACACGCCCAAAC
CACCATCGTCCAAATCTGTTGCACCCGCCCCTTCACGCCCTGCTGTTGTC
AACCCTGGAGTATCAGGAAGTCGCAACGAGAACCAGTATCAATTTCTTGT
CACTCGTCAAAAGGAATTCAAGAAAGCAGCTCTTGAAGCTAAACATGCAG
GCAACATTGATCAAGCTAGAGATTATCTCCGAAAAGCAAAGGTACGCTAT
CATCAAGCTGACATTCAttagacaaaaatatttgtgaacattttttgatt
tgtttaaaCTATTTCAATGTTGCTCTTTCTCGTTTCAAGGGATTGGATCC
GATGATCGAAGCTGCATCCAGTGGACTTGGTGTGGATCTCACAACAGTAC
GTGATCGCTTTGATCCTCACTGAAAGCTTTTTTGATCACTCATTAATTCA
TCTACCTTTCCTCAATATTTCTAGAAATCTTTTATGTGATAAAATAATCA
AGTTGAAAGTTACGAAAATTATATGATAAGTTAAAATTACCAATGACGAC
GAAAGTTCTAAGttgaaagttaaaaacatcGTGATGATGTACATGCTTTT
GCCAATTTTAGGTTCCATCGGTGCGACCGACCAAAGGAGCGTCAACACAA
CAAGGCTCATCACCTACTGGTTTAAGAGAAGAAATCAAGATGACTGGAAC
GAACAATGAAAACTATGTGTTCGTTGAAACCGCTCTTCAAAGACAAATTG
AGGTCAGTGCTTCTTTACCATTGTTACCTCACAAAATTAAGTATTTTATT
TCTTGACGGTGAAGTTCGTTTGATAAAGACGattgttttaagttttttaa
tttttcatacatAGGCCGCAGAAAAGAACACAGCTCATTACAAATTGATG
GGAAATTTAGATGCTGCCAAAAAGTAAGTTTTCCAGCTNTTTGGCGTGGA
TCTCACAACAGTACGTGATCCTCACTGAAAGCTTTTTTGATCACTCATTA
ATTCATCTACCTTTCTTCAATATTTCTAGAAATCTTTTATGTGATAAAAT
AATCAAGTTGAAAGTTACGAAAATTATATGATAAGTTAAAATTACCAATG
ACGACGAAAGTTCTAAGttgaaagttaaaaacatcGTGATGATGTACATG
CTTTTGCCAATTTTAGGTTCCATCGGTGCGACCGACCAAAGGAGCGTCAA
CACAACAAGGCTCATCACCTACTGGTTTAAGAGAAGAAATCAAGATGACT
GGAACGAACAATGAAAACTATGTGTTCGTTGAAACCGCTCTTCAAAGACA
AATTGAGGTCAGTGCTTCTTTACCATTGTTACCTCACAAAATTAAGTATT
TTATTTCTTGACGGTGAAGTTCGTTTGATAAAGACGattgttttaagttt
tttaatttttcatacatAGGCCGCAGAAAAGAACACAGCTCATTACAAAT
TGATGGGAAATTTAGATGCTGCCAAAAAGTAAGTTTTCCAGCTTTTCCGG
CTTCAACATTCTTCTGTATAAATATCAACGGTTTGATTGATGTAATTTTA
CCTTGCAATTACataattctttttaatttctttcataGCTTTGAAATGTT
GTTAAAGAACTCTCAGAAAGACATAATGACGCTACAACAATACAAAGCAA
ATAAATCGCCCGTTCCCAAATGCTTCTACGTCAAAAAGACCTTCCCCGTT
ACAAAgtaattttttcttctctttggTTTACGGAATCAGTAATATCTGAT
AGTGACTTGACAAAACTAGTCAGTTCTCGATGTAAGTGCTTTTTTCACat
gataaatttttcatttttcttacatACAGGTCCAATCCACATTTGAGTGA
TTCTGAATTAGAGATCACCGTGGTTCGATGTTTGAACGTACCGCTACAAC
AAGGTGAGTGACAATGCTTTCTTTTGTTGAATGAACTTCACTTCACTTTC
TATTGATTTTTGAACTTTGCCTGGATGTCCACTTTGACTTTCGATTTCTC
CGAACAACTCCTTACGTAAAAAGTCTCATCTTTTGTTTAGACAACAACCA
ctgctttttttttatttcaggctACCAACCAAAAGATATGTATACTTATG
TCACTTNGTCAACACAACAAGGCTCATCACCTACTGGTTTAAGAGAAGAA
ATCAAGATGACTGGAACGAACAATGAAAACTATGTGTTCGTTGAAACCGC
TCTTCAAAGACAAATTGAGGTCAGTGCTTCTTTACCATTGTTACCTCACA
AAATTAAGTATTTTATTTCTTGACGGTGAAGTTCGTTTGATAAAGACGat
tgttttaagttttttaatttttcatacatAGGCCGCAGAAAAGAACACAG
CTCATTACAAATTGATGGGAAATTTAGATGCTGCCAAAAAGTAAGTTTTC
CAGCTTTTCCGGCTTCAACATTCTTCTGTATAAATATCAACGGTTTGATT
GATGTAATTTTACCTTGCAATTACataattctttttaatttctttcataG
CTTTGAAATGTTGTTAAAGAACTCTCAGAAAGACATAATGACGCTACAAC
AATACAAAGCAAATAAATCGCCCGTTCCCAAATGCTTCTACGTCAAAAAG
ACCTTCCCCGTTACAAAgtaattttttcttctctttggTTTACGGAATCA
GTAATATCTGATAGTGACTTGACAAAACTAGTCAGTTCTCGATGTAAGTG
CTTTTTTCACatgataaatttttcatttttcttacatACAGGTCCAATCC
ACATTTGAGTGATTCTGAATTAGAGATCACCGTGGTTCGATGTTTGAACG
TACCGCTACAACAAGGTGAGTGACAATGCTTTCTTTTGTTGAATGAACTT
CACTTCACTTTCTATTGATTTTTGAACTTTGCCTGGATGTCCACTTTGAC
TTTCGATTTCTCCGAACAACTCCTTGCGTAAAAAGTCTCATCTTTTGTTT
AGACAACAACCActgctttttttttatttcaggctACCAACCAAAAGATA
TGTATACTTATGTCACTTGTGAGATGGCCTATCCTACGGTATGTACTGTA
ATCATTCtttatattttatgattttgaaggttttataaATAACTGAAAAT
ATGATTCATTTCCACCACCGTTCCCATTTGCATAACTgcgatattttgaa
aattcgaattCGTGTTCTCGGATCAAAATCCCAGTGTCAAACTTTCAGAA
ATGTATTTGTGAAAAAGTTTCATaagttttctaaaaattaaGTTAAGCCA
AAACTTCAATAGATCTAACATCTAAATGCAGCTCTAAGGGAGTATGGTGT
GTACAATGCTATGTAATGATAGTAAGGAATGAAAGAAATGGTGCATAAGG
GTTGCAAGGATTTTATTTATTCTATGAAAGTATTTAAAGATTTGTGAACA
ATTATTGTCGTTGAGTTAGATCGATAACGACTGGTTGTTGGTTGATGGCT
GACAAGTTGGGAATGGGTGTGATGTTTCGTTTTGCTTGTTTTCGTGGTCT
TTGAATATATTGGGGGGTAGTATTTTGTTGATAAGCTTGGGTGTAAATTC
CTGATGGTTGAGGAATGTATGGAAAATAAGCGATATTTTGTGTGGTGTTT
TGTTGAGTCATCATTCGAGGGCGTTTATGATAGAAAGCTGGGAAGACGAT
GTTGTTGCCAACATTGTGTCTTTTGCGAGAACGTAAAGAAGCTATGTCAT
AGTATGGTTTGAGTGGATTGATTGGTCGAACAGGAGCTGCGGGTTTTGGT
GCAGGGGGTGTGATTTCTTTTGGTTTTTCGAACAAAGCCTCAAACAGGTC
CTCTTTGGAGGGCTTTGGTGTCACATCGTCATTTTGTGTCACGCGTGACT
TTTTGCAAGCTATTTGATCGCCAGAAGAAGATCTTTTTGATCCAACTCGA
CGGAAGTTCAAAGAATCCGAAAATTCAGACAATTCTGTATTCAAAGCATC
AGTTGAAGATGTAGTTTGGTTTTGTCCGCCAAGTGATGGTTCTTGTGCGA
CTGCACTGTTGCATGTATCAAGGGGTTTTAGCTCTTTGCTAAACAAACca
tttgaattgcttttgagagATGCTTGTTGTGATGTCTTTGGAATGACGTC
ATCTTTGGTTTGTTGAacaattttgattggttcatttGGTTGATATCGTT
CAAGATATCCTCTGCAAGCATCGAGTTGTGATtcttgaattttggtgaaa
ttcTCCAAATCATCGAAACTAGAAAAGAGGAAAAGAGTTGATCGAATTCT
GAAATGATTTGgtggaaaatatttcaattcgatGTATGAACAAGTTCAAA
AAACGAACAACcactcaacaacaacaatacATCATTTGAAATCGATTTCT
TACCTTTCTTTTAGATATTGATAAATTGATTTTAATTCGTTGATATCTTT
GATACAGTCCAAACCTCCAtcaatttcttttaatttcCGTTGGCAAATTT
TATGGCGATCCCCAAAATCACGTGTCAAGTATTTTGCTTCTTCGATCACC
TGATTTAAATTCGCCAAGATTTTTTCTTGAGATGGCGAAAGGTTTCTTCG
GCCATTCTTCATCAAAGAAGAAACAATTTCTGCCGAAGCAAATAAGTTGA
TTTGAATTTGTGTGATGTACGTATTCAAGTCGTTGTATCTAAAATTGGGG
AAATAAGATCAgttataaacatcaaaacaccTTTTTAGCGCTGACAGTCA
CTCCCTTTACTTCCCTTCTACATGTTTTTACATCTAACAGAATGATTTAG
GGTTCAATNAAAACACCTTTTTGGCGCTGACAGTCACTCCCTTTACTTCC
CTTCTACATGTTTTACATCTAACAGAATGATTTAGGGTTCAATGAAAAGT
ATGTAGATGAAATTTTACCTCTCTCGGAGATTTCTATATGCTTTTCGGAC
ATCAGATCTCTTTGTGATGATATCTAAAAGAATATCTTCTGCATCATCTT
GTATCTGACTGCAAAACATGGGACCACAATATCGATATTGATCTTTGTTT
CCAACTGCTTCGTCGATCAAATCTTTCAACTCGCCCCAGGCTTTCGCGTT
GTCGAATTTGGAATTCATTTTCAAGTTTCGACGAATTTGGAACAAAAGGA
TGCACCAGAACAAATTTAGTATGCAAAACAATCCAATGAAATAGTATTTC
TCGCGAATAATCGAAAGAAATAGCGAGAGCTGATAAAACACAGCCACTCT
TCAGAATCAAAATTCCTACctaaatttcatttcaacacCGCGCGTGTTTT
CTTAAAgcgaaaaaaatttgacgtcaatatTTTAATTGACGTCATTCAAG
CTACATATCGACAGCAATGATGACGAAACCAAATGGTGGAGAGGATTGTT
CATTCTTGGAGACGCAAAGGGGATTTTGGACTTGGACTTTTGGGGTTTCT
AAGTAACTTTAGCTAATTAATTCCTGTGTCATATATTGTCATATATTACA
CGATAAATTTCATATTCAGGAGAAGCCGCAAACTGCAACAACGACCACCA
TCAAAGAAACCATAAACCCTGGTGAGGACATTCGCTTCGCTATGCTATGG
GATTTTGGTGGAAGTTTGATTTAGATGTTGAAAAGATTTTAGTTATTTAT
TAAGTTTTTTATGGGATTTTCCTGAGATTTTACCTTTATCTTTCTTGCAC
AGAGAAGCGTGTCAGCAATTTcgattttgctattttttccctTGTAAAAT
TCCTGAGATTTGTCGAGTAACAATGCTCTGCTTTCTTATTTCAACATTCT
TCATCATTCTGATTTCACACAATTCTGGTGACTTTAATCTGTTCACTATT
ATTTTCACTAATTGTTGCTAAGCTACTTTTTTTCCTGCAATTCCTTTGGG
CGTATTTTTCACTCCCTTTTGTCTCTTTCGACAAAGCTAATCTTTCTttt
catatttcattttcagaataCAACGGTGTTTTCAAAGTGCTTATTGATCG
CAAGCAAAGTGCTTTTAAAAGGTTTTGTAGGCGTGGCGTGGTCAACTTCA
AATTATTTTATGTCAGGTAGGTGGAATGTTgagtctatatattaatacgc
ttaaacgtgtgtgtttacaacattttgtaaaaagttttcgcaaatctaac
aaagctctacaaagcctcctcttcatggcgttgaaccatcatctttttgc
accctaagcagatttcctaccactagactaactttgagaccccaagatac
tattttctacTCACCAAGTCtttggagcttgatgggttaaaatcaaccat
cttcccaatttttttttctcgttttaaagaattcttattcttaaaacttt
ctgtttacaatagcggctccctatcactttcaaaacttttcaaagtctat
aaaagtcaccctcgaatgtccaaccacgatggctagccacgatggctaaa
aagatctaaaatatatatacttttgctaagccatttatttaattgtggtt
aaaaattacaatgcaatgttatcttctttctcctttatttcttaaaatca
aaatcaaatcatcacTCGGCGGCTATCTTTCTTCCGttagaattttttag
atgtgtagtgattcactggaatgggacacgcagcgtgcgacgctgcgcat
acggctagttgATTTTAAACGTTCTCAATTTACTAACTACAGTGCagtca
taactcgaacacgaaCGGGGAATGCAataaacttgttcgagttgtagagg
ttcgagttaaagagacgcCACTGTATAACCCATAGTGTCCTAGTAGGTTG
GTTCCCCaacttgaaaatcgaaaaaagtcCCTCTTTAGTCCCCCCTaagg
ttttacaaaaaaatttccccTTTGAAAATTGTGTTAAACTTCTCACAAAA
CCCACATTTAGTATGGAAGTATTATTTTAAAAGAATACTATGTAACCAAA
GAGAAAAAAGATATCGAAACTTGAATCGCATTGTATTTGTCCATTAAACT
GCTTGCTTTTTTCTGGTTGTAGAGGCTTTCTGAAGAGTGACAAAGCAATC
GGACAAGCGAGCGTCAAATTAACAGGATTCGCCAACAAATGTGAAATCCA
CGAATGTGTTGATGTAAGTtcgctttcattttcttctccTAAATCTCTTC
AAACATTTCCAATCTAAATCGCTGGCCTGGGACATTCCAAGACAGGACCA
CGATTCGCTATGCTTGTTCCTTTAATCTTACCCAtccaattcaatttttc
aatttctctaCATTTTTTCCGTAGATCGTCGACCTGGAGAAAGGTCGTAA
AGCAATTGGTGGGAAGATAGAAATCGTGCTCAAAATACGCGAACCTTTTG
TAGACAAAGATACAGAGATTGTCAACGAGAAATGGTTGATATTAGATGCA
CATCTGCGCAAACTCGATATGGTAAGATGTTAGAAATGCTGTGTGATACC
AAGCACTGCGATTTGCTTTGAAATAACATTATCTTTCCTTTAAACAAATA
CTACTTTTCCAGGAGGGAttcgttttattttgattgtGTTTCATTGAtct
tccaactttttttttcagaaaacccCATCAGCAATTCCTCAAGGAAAAGC
CGTTAGCGCGTGAGTATagacattttcttttcttttgaattatttcaaaa
taatttacttcTCCCCACCTGCTTAGGTATCAGAGATATCCACCAATATG
CAATTTTTGACCTCCACCATGAAGAATTCAAGAAATTTGAGATAGTTCAC
CAGGCATTTGTCTGTCTGTCTTTTGACCGGCATCTTTGTTCTGATCTCTA
GCCATCCATCGAACGGTCATCAACACATCAAACTACATTCTTTATGAACG
AATCTTTCTTCCGATAATTTTCTCTTTCTACTATTTCTTTCTTCTCCATA
GAAATTCGAAAGTTTGCGCCATTTCTTGAATTCTTATTGGTGGAGCATAA
TCCATTGCAGAAGTTTTGTTCGAAATTTTATTTACtatcatttttattgt
tttttacacaggatataattttttgaaggggatttttagttttctttgta
aatattttttgtacataAGATGCTTTTATAAGACTGttaatataagaaaa
aaaggagCACCATGATGAATTGAATCATTACATTGTCAGTATTCTTGTCT
ATGCAATTAATATATTGTGTAGATTGTGTAGATCATGAAATCAATGATTT
TACCCAATTAAATAACTGAGAGAAGCTGAACCGTTTCATATTTTTTGTCT
TTAGATACGAAAGTTTAGAAGTCATGAAATCTGAGAAATCGCTCTTTGAA
CGACAGGTAATAATCATACCTTTCAAAtccctttttttttaattgcgtAT
CTCCCTAACTTGtaacatttttggacctacctccgggtaccccggtggag
gttctataaattaacccatgtccgttcgtccgtccgtccgttcgtccgtc
tgttaccagcttttctcaggattgactcattagttttttctgattttttg
cggagcccgatttttgagaaaaaatttatttgggcaaatttgggccaaaa
actacctaaaaatagggttttttggactttgtgcaaaatcctgtcattac
ttttttctgattttttgtacaaagatggagggcaagattctctaaagaat
ggctgaagtggtttttttccgaaaaattcttattcgccttaaaaaacgga
tttccgtattttggggaaattacctttaaccaaataagaaaatatagctt
ttctcaaagttgactcattatttttttctgattttttgcacaatgatgca
aaatggcaatgcctaaaatgtgacagatGTTTCGGCTTTTTTTACCTTTA
TGCCCGCACTCCATAACTCTATATTACTCTCCATAACTTGCTCGAACATT
TCACTGAGTTTCTGACTATGTTCAATGAATTAATAATTTCTCCTTATAGG
TAGCTGCTTACAAACAGCAAGGCAAACAACCTCCAACAGAGTTATTACAT
AAAATCAAATCTCACAACGAAAGTATGATAGCCATCCAAAATCGCCTGAA
ACAAGGAGGAAAGCCAGCTGTTATAGGTTCGTAAgtctttgtcaaatttt
cttcCCAAATCGGCTGTTAGATAATTTCAAGTGATTTTGTCTCTGTATGa
cctttttggatttttatGGATATCTTCGGTTTTTTGTTTAGAATATTTGA
AGAATTTGGGTCGTGGAGTAGAAGTGGAGATGAAGAACGCGCAAGTTGCT
GCTAAAAAGAACGATGACGTAAGAAATATTACAATACCAATGCAAAGTCG
AACCCAGTTCCTTTGTTCACTTTTTNTGCTAAAAAGAACGATGACGTAAG
AAATATCACAATACCAATGCAAAGTCGAACCCAGTTCCTttgttcacttt
tttatgattctaaaGTTTGTCCCAAAAGTATGTGGACGCTTtagtttttg
aacattttctcaGCACCCATTAATGTTATGTTAGAAAGTTaaacaccgtt
ggaaagatatttccaaggaaaataaaataaatgaaattctTTAGAATGTT
TGAATCTTGCTGATTTTAAAACAGCAAAAATGACCAACTTCACAgtgctg
taactttttatctaaggaaaatacaaaaattctGAATAGAGATGTAAAAT
CAGCAAGGTTCAAACATTCTAAAGAATTTCATGAAGTTCATgtcatgatt
tttaaaacaatacaatttttttcattttttttctttatttttcaactttt
aaaaaatcttttatcctttagattaTTTTCTTGAGAAATATCATTCTAAC
GGTGTATAACTTTCTAACATAGCATGAATAAGTGCtcagaaaatgtcaaa
aaactaaagtgtccacatactttaGAGAGAGAGAGTTTGATACGTATCGT
AAATTGAAAAAGTGTCTCGAAGCATTCAAGGATTAATTTAATCACATCTT
TTTTGCTAGTGGGTATGTGAACTATGAAAATGTAGAAATTGCGGAATTGG
AACGAGTTTCTTATTATGATAAATAAAGGAACTGTTTTTCTCCCGTTAGG
ATATCATTCTCTGACAAACCCTCCTTTTTCAGAAAActgcaaaaaattgt
ttggttaaGAAGAAATTATTGGACAAAGaggtaaaatataaattttcttt
gtcttcgATTTTCCCTCCTACTATTATTCACTCGAATCCAGCGGCAAATC
CAGCAAATGGCTTTTTTTTTATCCAAAGACGGttaaaagggaagaaattt
tgacgggaatttaatttggattAGGAAAAATGCTAATTATGGAGTATGAC
GGATTTTTTTCAGGGTTAAAACAATGTGACTTtcaactttgtgaaaaatt
aaattaaagaatAATAATAGTGGGAActtgatttggcggatttcTGACAT
ATCCGCCAAATtctcttcccgccaaaatttgcTTCCCGTAAAGTATATGA
TAAATTTAAGGAAATTCAGCTATCTTAGCTTTGGCAAACTGAATCTTGGT
TTAGGGAAatgaaattaggtattttttttaacaaaaaggaAACGGTTCTT
CTTGTTTCAGATTGGAGTATTGAAACAAAGGCTGGGACTTTGATGAGATA
AGTGGCTTAAAGTTATTAccaatttatttttatacattTCTAGGAAAATa
cgaaatattaaaaactaAAATGTATTATTTATGTACAAACTTGAAATAAG
atcggaaattttcaaaacgtatatggAATATTATCGTAAACTACAGAATA
TGCATCGAAGATTTacaaaaatgttagattctGGCTGCCCGGTACACAAA
AAACTCTGTGAAATCTATTTTAAGATGCTCGGACCaatgaaaaatcatga
aaatagtAACACGGTTTAGCAGTTGATACGTTGATGAATTTTTCAGCAAA
TTTCTTCGCCCAACGTTCCAAATTTTATGGGTTATGCTTTCACAGTATTG
TCAACATATTAATAATTCTTTACTCCACACACGACGTTTCATTTTCCAAT
TTGGTATTATATTTGTTGCCAGTTTTTTCTAAtcatttgtttatgtttat
tgTATTGTAATTATCAATTGTTTATATGATATTGGAATAAATTTTCCGTC
CGAACGTCTTTTGTAGCGGACGGTAGTTATCACACATCGTCCCTTCTCGA
TTCACTTTGGTCGATCGCAACTGCCGAAATTCTTGCAACTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000572	XLOC_000572	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000007	supercontig	sc0000007:243363..258453 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.42591e-08	7.80148e-09	2.67858e-09	6.28259e-07	0.00409414	0.100407	0.00743993	0.00161384	0	3.05522e-08	0	0	1.57702e-10	0	0	0	0	0	1.0293e-08	0	1.00349e-08	0	1.81968e-10	2.49577e-10	0.157707	0.00118701	0	4.97219e-10	7.66151e-10	0

Blast

[Close]

BLAST of TCONS_00000979 vs. Swiss-Prot (Human)
Match: C2D1A (Coiled-coil and C2 domain-containing protein 1A OS=Homo sapiens GN=CC2D1A PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 6.484e-71
Identity = 232/829 (27.99%), Postives = 380/829 (45.84%), Query Frame = 2

Query:  527 GLKEIERLIKSVSKGATISEDDXXXXXXXXXXXXXXXXTQTLPPPEKPGRATVITPV------EPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNEKLNLLLERQKQFKVLALQMKQRGDIDGAKKNLAIAKQFDSVIAAVKEGKEVDLSRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEALEQRLEKYRETGAKAKEEGNSGKVRRMGRIVKQFEAAIKDYKANKPVDFNELPCPPGFGPIPGETQAEEPGDPQ-----EMAQMLIN--------------------APLDGPEEDDTXXXXXXXXXXXXXXXXXXXNPGVSGSRNENQYQFLVTRQKEFKKAALEAKHAGNIDQARDYLRKAKGLDPMIEAASSGLGVDLTTVPSVRPTKGASTQQGSSPTGLREEIKMTGTNNENYVFVETALQRQIEAAEKNTAHYKLMGNLDAAKNFEMLLKNSQKDIMTLQQYKANKSPVPKCFYVKKTFPVTKSNPHLSDSELEITVVRCLNVPLQQGYQPKDMYTYVTCEMAYXXXXXXXXXXXXXXXXXN-PEYNGVFKVLIDRKQSAFKRFCRRGVVNFKLFYVRGFLKSDKAIGQASVKLTGFANKCEIHECVDIVDLEKGRKAIGGKIEIVLKIREPFVDKDTEIVNEKWLILDAHLRKLDMKTPSAI--PQGKA--------------VSAYESLEVMKSEKSLFERQVAAYKQQGKQPPTELLHKIKSHNESMIAIQNRLKQGGKPAVIEYLKNLGRGVEVEMKNAQVXXXXXXXXXXXXCLVKKKLLDKEIGVLKQ 2869
            GLK +E L+ S+ KG  I E D                   +PPP   G+    TP       +P       P  R     P           A P + P       L  L  RQ+ +K+ AL  KQ+GD   A ++  +AK FD+V+ A+  G+ VDLS          P P   P  P +  S P  P   PS++  P  P T+LEALEQR+E+Y+   A+AK +G+  K R   RIVKQ++ AI+ +KA + VD  ELP PPGF PI G  +A +P         E A  L N                    AP   P+   +  P S  +            P  + +R + Q  FL  R+K+  +AAL AK   +++ A+ +LR+AKGL+PM+EA+ +GL VD+T VP     K           GL +E          Y  +   +++Q E    ++  +  +GN+     FE L ++ ++ +  L+Q      P P   + ++TF V K  P LS +++ + +V+ +N+P   G  P D+  +V  +  YP  +      T++ +  + PE+   FK+ I+R    F+R  +   + F++ +  G  K+D+ +G A +KL      CE+ E ++++D   GR+  GG++E++++IREP   +  E   E+WL++D     +    P+ +  P+GKA                   SL V+  ++   ER++ A +Q  +  P E+  + +   +     + +L+QGG     EY   L R ++   + A+          AK  L ++ L++ E+  L++
Sbjct:  169 GLKTLENLLASIRKGNAIDEAD-------------------IPPPVAIGKGPASTPTYSPAPTQPAPRIASAPEPRVTLEGPSATAPASSPGLAKPQMPPGPCSPGPLAQLQSRQRDYKLAALHAKQQGDTTAAARHFRVAKSFDAVLEALSRGEPVDLS-------CLPPPPDQLPPDPPSPPSQPPTPATAPSTTEVPPPPRTLLEALEQRMERYQVAAAQAKSKGDQRKARMHERIVKQYQDAIRAHKAGRAVDVAELPVPPGFPPIQG-LEATKPTQQSLVGVLETAMKLANQDEGPEDEEDEVPKKQNSPVAPTAQPKAPPSRTPQSGSAPTAKAP------PKATSTRAQQQLAFLEGRKKQLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEASRNGLPVDITKVPPAPVNKDDFALVQRPGPGLSQEAA------RRYGELTKLIRQQHEMCLNHSNQFTQLGNITETTKFEKLAEDCKRSMDILKQAFVRGLPTPTARFEQRTFSVIKIFPDLSSNDMLLFIVKGINLPTPPGLSPGDLDVFVRFDFPYPNVEEAQKDKTSVIKNTDSPEFKEQFKLCINRSHRGFRRAIQTKGIKFEVVHKGGLFKTDRVLGTAQLKLDALEIACEVREILEVLD---GRRPTGGRLEVMVRIREPLTAQQLETTTERWLVIDP----VPAAVPTQVAGPKGKAPPVPAPARESGNRSARPLHSLSVLAFDQERLERKILALRQARRPVPPEVAQQYQDIMQRSQWQRAQLEQGGVGIRREYAAQLERQLQFYTEAARRLGNDGSRDAAKEALYRRNLVESELQRLRR 951

The following BLAST results are available for this feature:

BLAST of TCONS_00000979 vs. Swiss-Prot (Human)

BLAST of TCONS_00000979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
C2D1A	6.484e-71	27.99	Coiled-coil and C2 domain-containing protein 1A OS...	[more]

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TCONS_00000979 (transcript) - C. hemisphaerica