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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000942 ID=TCONS_00000942|Name=TCONS_00000942|organism=Clytia hemisphaerica|type=transcript|length=1083bp
CCTCAAACGGAAAGCCGAAAGTCTACCTACCCTATTAGAAGCAGCTTACG
CAAAATCTACTTTGAGAAAATACAAGCCAGCATGGGAGAAATGGGTATCT
TGGGCTGACCCCTTCGAAGAAATAAACAGTTGTCCTGCGGATTCACTTAA
CGTCGCCATCTACTTAAACGATCTCACAAATTCTTTCGCAACCGAAGGCG
CACTGACAGCAGCAATCTTGGGCATAAGGTGGGGACATTTGAATTCAGGT
TTTGATTCTCCGACAGATCACCAACTTGTTAAGTTAGCACTCAAAGGAGG
TAAACGCATCATCGCAGAGAGGCGATCCCCATCAGACAGACACCGCCGAA
AGGAGCCCTTGCCTTCAGAGCTTATTAGAAACCTCGCAAAAACATATTTC
ACTTCAACAAATTTAGTCGAAATTCGCTTTCTTCTCATGGTCATTCTAGG
TTTTGCAGGATTTTTCAGAATTAGCGAAATCCTTCAAATTCAGATAAAGG
AAATCACTTTTGACAATTTCGGTGCAACAATTTTTCTACCAAAGTCAAAA
ACCGACCAAGTTCGTGAAGGTAATATCGTTTTCATTAGCAAGACAGGAAC
AAAATGCTGTCCAATCTACTGGCTTCGCAAATATTTGTCACTATCCAAAT
TAAATTACAAACCCGAGGCTTACCTAATTTGTCATCTTTACAAAACAAAG
AGAGGTCACAATGCCCATGGTCTTCTTCCGATATCCTACACGACCGCTTT
GAAAACTTTCAAGAATCAtctttcaaaagaaaccaaTCCTTCCATTTACG
GCTTGCACTCATTAAGATCAGGAGGTGCATCAGAGGCAGCAAACAATGGT
ATTTCGGACCGTCTCATTTCAAAACACGGTCGTTGGTCATCGAACACCAG
CAGAAACACGTATATCAAAGATAATGCcgaaaaacgttttaaaatttCCC
GTTCTTTAGGGATTTAGACATTCCgacttcctttttctttctcgtgTTAA
TGCAAGCAAATACCAAACAAAAAGTAGAAACAACTATcgttttttattgt
ttgtttcattTCGAAAAGGAGAAATAGTAGANN Run BLAST on NCBI protein sequence of TCONS_00000942-protein >TCONS_00000942-protein ID=TCONS_00000942-protein|Name=TCONS_00000942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
LKRKAESLPTLLEAAYAKSTLRKYKPAWEKWVSWADPFEEINSCPADSLN
VAIYLNDLTNSFATEGALTAAILGIRWGHLNSGFDSPTDHQLVKLALKGG
KRIIAERRSPSDRHRRKEPLPSELIRNLAKTYFTSTNLVEIRFLLMVILG
FAGFFRISEILQIQIKEITFDNFGATIFLPKSKTDQVREGNIVFISKTGT
KCCPIYWLRKYLSLSKLNYKPEAYLICHLYKTKRGHNAHGLLPISYTTAL
KTFKNHLSKETNPSIYGLHSLRSGGASEAANNGISDRLISKHGRWSSNTS
RNTYIKDNAEKRFKISRSLGI Run BLAST on NCBI transcript from alignment at sc0000005:1348827..1349909 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000942 ID=TCONS_00000942|Name=TCONS_00000942|organism=Clytia hemisphaerica|type=transcript|length=1083bp|location=Sequence derived from alignment at sc0000005:1348827..1349909 (Clytia hemisphaerica)
NNTCTACTATTTCTCCTTTTCGAaatgaaacaaacaataaaaaacgATAG
TTGTTTCTACTTTTTGTTTGGTATTTGCTTGCATTAAcacgagaaagaaa
aaggaagtcGGAATGTCTAAATCCCTAAAGAACGGGaaattttaaaacgt
ttttcgGCATTATCTTTGATATACGTGTTTCTGCTGGTGTTCGATGACCA
ACGACCGTGTTTTGAAATGAGACGGTCCGAAATACCATTGTTTGCTGCCT
CTGATGCACCTCCTGATCTTAATGAGTGCAAGCCGTAAATGGAAGGAttg
gtttcttttgaaagaTGATTCTTGAAAGTTTTCAAAGCGGTCGTGTAGGA
TATCGGAAGAAGACCATGGGCATTGTGACCTCTCTTTGTTTTGTAAAGAT
GACAAATTAGGTAAGCCTCGGGTTTGTAATTTAATTTGGATAGTGACAAA
TATTTGCGAAGCCAGTAGATTGGACAGCATTTTGTTCCTGTCTTGCTAAT
GAAAACGATATTACCTTCACGAACTTGGTCGGTTTTTGACTTTGGTAGAA
AAATTGTTGCACCGAAATTGTCAAAAGTGATTTCCTTTATCTGAATTTGA
AGGATTTCGCTAATTCTGAAAAATCCTGCAAAACCTAGAATGACCATGAG
AAGAAAGCGAATTTCGACTAAATTTGTTGAAGTGAAATATGTTTTTGCGA
GGTTTCTAATAAGCTCTGAAGGCAAGGGCTCCTTTCGGCGGTGTCTGTCT
GATGGGGATCGCCTCTCTGCGATGATGCGTTTACCTCCTTTGAGTGCTAA
CTTAACAAGTTGGTGATCTGTCGGAGAATCAAAACCTGAATTCAAATGTC
CCCACCTTATGCCCAAGATTGCTGCTGTCAGTGCGCCTTCGGTTGCGAAA
GAATTTGTGAGATCGTTTAAGTAGATGGCGACGTTAAGTGAATCCGCAGG
ACAACTGTTTATTTCTTCGAAGGGGTCAGCCCAAGATACCCATTTCTCCC
ATGCTGGCTTGTATTTTCTCAAAGTAGATTTTGCGTAAGCTGCTTCTAAT
AGGGTAGGTAGACTTTCGGCTTTCCGTTTGAGG Coding sequence (CDS) from alignment at sc0000005:1348827..1349909 >TCONS_00000942 ID=TCONS_00000942|Name=TCONS_00000942|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at sc0000005:1348827..1349909 (Clytia hemisphaerica)
CTAAATCCCTAAAGAACGGGaaattttaaaacgtttttcgGCATTATCTT
TGATATACGTGTTTCTGCTGGTGTTCGATGACCAACGACCGTGTTTTGAA
ATGAGACGGTCCGAAATACCATTGTTTGCTGCCTCTGATGCACCTCCTGA
TCTTAATGAGTGCAAGCCGTAAATGGAAGGAttggtttcttttgaaagaT
GATTCTTGAAAGTTTTCAAAGCGGTCGTGTAGGATATCGGAAGAAGACCA
TGGGCATTGTGACCTCTCTTTGTTTTGTAAAGATGACAAATTAGGTAAGC
CTCGGGTTTGTAATTTAATTTGGATAGTGACAAATATTTGCGAAGCCAGT
AGATTGGACAGCATTTTGTTCCTGTCTTGCTAATGAAAACGATATTACCT
TCACGAACTTGGTCGGTTTTTGACTTTGGTAGAAAAATTGTTGCACCGAA
ATTGTCAAAAGTGATTTCCTTTATCTGAATTTGAAGGATTTCGCTAATTC
TGAAAAATCCTGCAAAACCTAGAATGACCATGAGAAGAAAGCGAATTTCG
ACTAAATTTGTTGAAGTGAAATATGTTTTTGCGAGGTTTCTAATAAGCTC
TGAAGGCAAGGGCTCCTTTCGGCGGTGTCTGTCTGATGGGGATCGCCTCT
CTGCGATGATGCGTTTACCTCCTTTGAGTGCTAACTTAACAAGTTGGTGA
TCTGTCGGAGAATCAAAACCTGAATTCAAATGTCCCCACCTTATGCCCAA
GATTGCTGCTGTCAGTGCGCCTTCGGTTGCGAAAGAATTTGTGAGATCGT
TTAAGTAGATGGCGACGTTAAGTGAATCCGCAGGACAACTGTTTATTTCT
TCGAAGGGGTCAGCCCAAGATACCCATTTCTCCCATGCTGGCTTGTATTT
TCTCAAAGTAGATTTTGCGTAAGCTGCTTCTAATAGGGTAGGTAGACTTT
CGGCTTTCCGTTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000942-exon-sc0000005-1491911889:1348827..1349909 | TCONS_00000942-exon-sc0000005-1491911889:1348827..1349909 | Clytia hemisphaerica | exon |
| TCONS_00000942-exon-sc0000005-1510915933:1348827..1349909 | TCONS_00000942-exon-sc0000005-1510915933:1348827..1349909 | Clytia hemisphaerica | exon |
| TCONS_00000942-exon-sc0000005-1575043694:1348827..1349909 | TCONS_00000942-exon-sc0000005-1575043694:1348827..1349909 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:1348827..1349909 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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