TCONS_00000939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000939
Unique NameTCONS_00000939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000939 ID=TCONS_00000939|Name=TCONS_00000939|organism=Clytia hemisphaerica|type=transcript|length=2373bp
TTCGAAATATTAATGTACACATGTACAcagtttaaaagtttataatttaa
aagtcaggaatcgaaaaaaaattcatccctGAGCAATGAACAAAAATGTA
ACAGGGTTTTTGCTAAGCTTAGAACAATATAAATCTCGCTAATCAAGGTA
GCAACATATTCTATAAAATAAATGATACGCAAAGTTTATTGgataaaatt
tactttcacGGAAAGAAACTTTCACGAATATAAGAAAGTTCACAAAATCT
TTGTATTTCGCGAGCGTTAACTTTTGCAAAggagtttttcaaaaatgcag
ttgACGATCTCTAATTCGATTCTCAAGGAGTTCAAGGGGTAttggttttt
attgaatatgGGAGGGTATCGAATAGTGGAACGTCACccaatttatattt
tgaataCCACATATTAAAACGATTACTCGTTGATCGGTATATATTCGCAA
AACCTCCTCAAAACCTGGGCTTAAATAAATGTTAAAGTCtggaaaaccaa
aaaaaaactaaagaaaaattaatatcAAATATCGAGGTACTATAAATATA
AGAATGTAATAAACTATGTCCATTGCAGTATTCTTATTCATCAGGGTTCA
AAGAACATGGATGTCTAAACTCTTGGCCATGTTCGTGTATCCAGAGATTG
GAAACCCATTTCTCACCAAGAAGAACTGGACACGCTGCATGTTTCGTTTC
AAAATCACCTTCTCCATTCTTCTTCAAATTATGCCAGAAAACACCCGAAC
CTTTGACAGCAGACGTTGAAATTCCCGGTCGGACTTTTATAAAGGTTGTG
TCACCTCCTCGTTCGACTGTCTCAAAATAGAATAACATAGTTGCGATTCG
ATTTCCAAAGTCGTATGCACCAAAGATACTCGAATCGTGCGGTGGTTCTG
CGAAATCATAATGTGCCTCATAATTGCCACCTATTCCGTAATTTGCGACT
TGTAAAGGTTCTGAATACGTCATATCCAAGTTGCCAAGAGCTCCGACTCT
GTTAATGACTCGAGCAACGACGCTGTCGTTATACGGATGTAGCCACGTGT
TTTTACTCGTCCGGTATTCGGCTACTCTTAACTTCCCCGTATCTACATCA
TAAACTTGAGCGAAATGTAACTTCATTCTCGCCGATTCTTTGATATGGTC
GACTTCGAAATCACTTAATATACCATGGTATAAATCGATGCGCGGTTCAT
GGTATACTCTTTCCTGTTTCAAAGGTTTCAAGTAAAATTGAGGATGAGGA
GTGTGGTACTTGCAGAACAACGTATCCACGTATTCCTGATCCAAAATCTC
CTCACGTCGACATCGTTTCTCTTGTAATGTTCGGTTTAATGGATCTTCAT
TTGATGGTTCCACAGTTCCTTCAGGGTGTATTCCACTAACTAAGTAAGAT
TCATACCAACCGATATTTTCTTTGCGTTTGATCGCACGTTTGCCAGTTCT
ATCCAACTTTAATGCTTTCTTACTGGCTTTGATAGCTTCAGAGTAGTTCC
TAAGCTTAAAGTTTCCCCATGATATAATATCATAGATATCCGACAATCGG
GTATATTGCCCTAGCGTTAAATCATCAGCTACTTCTAGATTTTCAAACTG
TCTTGTAACATAAGACGCCCACTCTATACCGTGTTGAAACATCCAAAAGT
GATTTGCATACATAGCGATATCGTGAATATCATCGTAAGAGAGCTCATGC
GCAGGCTGTCTCAAACCAGAAACCATTTCAGACACACTTAGTTTGTAAGT
GTCCTGGAGTCTGAAAAGCAGAAGATGGGAACCTCTCAGTTCGTTACTTT
CCTTGAAACCAGTTATACCTTTCTGGTAATGTGTCAAAACCTCAAAATGT
CGTAAAGATTCTTCAGAGGTTCTTATCCAATCCAAATCTTTCCAGTCcgt
taaaaatcttttaagcaGCTTGTAAGAATCGGGCGGGTTTGAGATGACAA
TATCTTTGGTTAGCCCTCTGTTATGAAGCATTTCTACGTCGTTTAAAAAC
CATTCCAATCGGTCTAAACGTGCAGTTTCCCTTTGATAGTAAGCCAAGAA
CTCAGCACCAATGTCCCGTTCAAAACTAACCAAATCCTTCAGCTCCGAAG
CTGTAAAATACATTTCATTCAAACTGGAGCAAAATGTCACTATTATTCCA
AGGAATAACGCCATTGATTTTTGAGAAGCCATTTTAGTCACGAAAAAGGA
ACGCGCAGAAGCGCTTCAACCTGCGGCCCTGCGCTCTCCTCAAAATcttt
tatctaatgttcataaatttgaaaatattttaaacaaaagaaactgAGAA
GCTAATTATGCAGCATGTGTTAAAATACAGCATACAGTTTTATGATATTT
CGACACGTTTTTGTTTAATGTAT
Run BLAST on NCBI

protein sequence of TCONS_00000939-protein

>TCONS_00000939-protein ID=TCONS_00000939-protein|Name=TCONS_00000939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=532bp
MASQKSMALFLGIIVTFCSSLNEMYFTASELKDLVSFERDIGAEFLAYYQ
RETARLDRLEWFLNDVEMLHNRGLTKDIVISNPPDSYKLLKRFLTDWKDL
DWIRTSEESLRHFEVLTHYQKGITGFKESNELRGSHLLLFRLQDTYKLSV
SEMVSGLRQPAHELSYDDIHDIAMYANHFWMFQHGIEWASYVTRQFENLE
VADDLTLGQYTRLSDIYDIISWGNFKLRNYSEAIKASKKALKLDRTGKRA
IKRKENIGWYESYLVSGIHPEGTVEPSNEDPLNRTLQEKRCRREEILDQE
YVDTLFCKYHTPHPQFYLKPLKQERVYHEPRIDLYHGILSDFEVDHIKES
ARMKLHFAQVYDVDTGKLRVAEYRTSKNTWLHPYNDSVVARVINRVGALG
NLDMTYSEPLQVANYGIGGNYEAHYDFAEPPHDSSIFGAYDFGNRIATML
FYFETVERGGDTTFIKVRPGISTSAVKGSGVFWHNLKKNGEGDFETKHAA
CPVLLGEKWVSNLWIHEHGQEFRHPCSLNPDE
Run BLAST on NCBI

transcript from alignment at sc0000005:1286552..1288924

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000939 ID=TCONS_00000939|Name=TCONS_00000939|organism=Clytia hemisphaerica|type=transcript|length=2373bp|location=Sequence derived from alignment at sc0000005:1286552..1288924 (Clytia hemisphaerica)
ATACATTAAACAAAAACGTGTCGAAATATCATAAAACTGTATGCTGTATT
TTAACACATGCTGCATAATTAGCTTCTcagtttcttttgtttaaaatatt
ttcaaatttatgaacattagataaaagATTTTGAGGAGAGCGCAGGGCCG
CAGGTTGAAGCGCTTCTGCGCGTTCCTTTTTCGTGACTAAAATGGCTTCT
CAAAAATCAATGGCGTTATTCCTTGGAATAATAGTGACATTTTGCTCCAG
TTTGAATGAAATGTATTTTACAGCTTCGGAGCTGAAGGATTTGGTTAGTT
TTGAACGGGACATTGGTGCTGAGTTCTTGGCTTACTATCAAAGGGAAACT
GCACGTTTAGACCGATTGGAATGGTTTTTAAACGACGTAGAAATGCTTCA
TAACAGAGGGCTAACCAAAGATATTGTCATCTCAAACCCGCCCGATTCTT
ACAAGCtgcttaaaagatttttaacgGACTGGAAAGATTTGGATTGGATA
AGAACCTCTGAAGAATCTTTACGACATTTTGAGGTTTTGACACATTACCA
GAAAGGTATAACTGGTTTCAAGGAAAGTAACGAACTGAGAGGTTCCCATC
TTCTGCTTTTCAGACTCCAGGACACTTACAAACTAAGTGTGTCTGAAATG
GTTTCTGGTTTGAGACAGCCTGCGCATGAGCTCTCTTACGATGATATTCA
CGATATCGCTATGTATGCAAATCACTTTTGGATGTTTCAACACGGTATAG
AGTGGGCGTCTTATGTTACAAGACAGTTTGAAAATCTAGAAGTAGCTGAT
GATTTAACGCTAGGGCAATATACCCGATTGTCGGATATCTATGATATTAT
ATCATGGGGAAACTTTAAGCTTAGGAACTACTCTGAAGCTATCAAAGCCA
GTAAGAAAGCATTAAAGTTGGATAGAACTGGCAAACGTGCGATCAAACGC
AAAGAAAATATCGGTTGGTATGAATCTTACTTAGTTAGTGGAATACACCC
TGAAGGAACTGTGGAACCATCAAATGAAGATCCATTAAACCGAACATTAC
AAGAGAAACGATGTCGACGTGAGGAGATTTTGGATCAGGAATACGTGGAT
ACGTTGTTCTGCAAGTACCACACTCCTCATCCTCAATTTTACTTGAAACC
TTTGAAACAGGAAAGAGTATACCATGAACCGCGCATCGATTTATACCATG
GTATATTAAGTGATTTCGAAGTCGACCATATCAAAGAATCGGCGAGAATG
AAGTTACATTTCGCTCAAGTTTATGATGTAGATACGGGGAAGTTAAGAGT
AGCCGAATACCGGACGAGTAAAAACACGTGGCTACATCCGTATAACGACA
GCGTCGTTGCTCGAGTCATTAACAGAGTCGGAGCTCTTGGCAACTTGGAT
ATGACGTATTCAGAACCTTTACAAGTCGCAAATTACGGAATAGGTGGCAA
TTATGAGGCACATTATGATTTCGCAGAACCACCGCACGATTCGAGTATCT
TTGGTGCATACGACTTTGGAAATCGAATCGCAACTATGTTATTCTATTTT
GAGACAGTCGAACGAGGAGGTGACACAACCTTTATAAAAGTCCGACCGGG
AATTTCAACGTCTGCTGTCAAAGGTTCGGGTGTTTTCTGGCATAATTTGA
AGAAGAATGGAGAAGGTGATTTTGAAACGAAACATGCAGCGTGTCCAGTT
CTTCTTGGTGAGAAATGGGTTTCCAATCTCTGGATACACGAACATGGCCA
AGAGTTTAGACATCCATGTTCTTTGAACCCTGATGAATAAGAATACTGCA
ATGGACATAGTTTATTACATTCTTATATTTATAGTACCTCGATATTTgat
attaatttttctttagtttttttttggttttccaGACTTTAACATTTATT
TAAGCCCAGGTTTTGAGGAGGTTTTGCGAATATATACCGATCAACGAGTA
ATCGTTTTAATATGTGGtattcaaaatataaattggGTGACGTTCCACTA
TTCGATACCCTCCcatattcaataaaaaccaaTACCCCTTGAACTCCTTG
AGAATCGAATTAGAGATCGTcaactgcatttttgaaaaactccTTTGCAA
AAGTTAACGCTCGCGAAATACAAAGATTTTGTGAACTTTCTTATATTCGT
GAAAGTTTCTTTCCgtgaaagtaaattttatcCAATAAACTTTGCGTATC
ATTTATTTTATAGAATATGTTGCTACCTTGATTAGCGAGATTTATATTGT
TCTAAGCTTAGCAAAAACCCTGTTACATTTTTGTTCATTGCTCagggatg
aattttttttcgattcctgacttttaaattataaacttttaaactgTGTA
CATGTGTACATTAATATTTCGAA

Coding sequence (CDS) from alignment at sc0000005:1286552..1288924

>TCONS_00000939 ID=TCONS_00000939|Name=TCONS_00000939|organism=Clytia hemisphaerica|type=CDS|length=1599bp|location=Sequence derived from alignment at sc0000005:1286552..1288924 (Clytia hemisphaerica)
ATGGCTTCTCAAAAATCAATGGCGTTATTCCTTGGAATAATAGTGACATT
TTGCTCCAGTTTGAATGAAATGTATTTTACAGCTTCGGAGCTGAAGGATT
TGGTTAGTTTTGAACGGGACATTGGTGCTGAGTTCTTGGCTTACTATCAA
AGGGAAACTGCACGTTTAGACCGATTGGAATGGTTTTTAAACGACGTAGA
AATGCTTCATAACAGAGGGCTAACCAAAGATATTGTCATCTCAAACCCGC
CCGATTCTTACAAGCtgcttaaaagatttttaacgGACTGGAAAGATTTG
GATTGGATAAGAACCTCTGAAGAATCTTTACGACATTTTGAGGTTTTGAC
ACATTACCAGAAAGGTATAACTGGTTTCAAGGAAAGTAACGAACTGAGAG
GTTCCCATCTTCTGCTTTTCAGACTCCAGGACACTTACAAACTAAGTGTG
TCTGAAATGGTTTCTGGTTTGAGACAGCCTGCGCATGAGCTCTCTTACGA
TGATATTCACGATATCGCTATGTATGCAAATCACTTTTGGATGTTTCAAC
ACGGTATAGAGTGGGCGTCTTATGTTACAAGACAGTTTGAAAATCTAGAA
GTAGCTGATGATTTAACGCTAGGGCAATATACCCGATTGTCGGATATCTA
TGATATTATATCATGGGGAAACTTTAAGCTTAGGAACTACTCTGAAGCTA
TCAAAGCCAGTAAGAAAGCATTAAAGTTGGATAGAACTGGCAAACGTGCG
ATCAAACGCAAAGAAAATATCGGTTGGTATGAATCTTACTTAGTTAGTGG
AATACACCCTGAAGGAACTGTGGAACCATCAAATGAAGATCCATTAAACC
GAACATTACAAGAGAAACGATGTCGACGTGAGGAGATTTTGGATCAGGAA
TACGTGGATACGTTGTTCTGCAAGTACCACACTCCTCATCCTCAATTTTA
CTTGAAACCTTTGAAACAGGAAAGAGTATACCATGAACCGCGCATCGATT
TATACCATGGTATATTAAGTGATTTCGAAGTCGACCATATCAAAGAATCG
GCGAGAATGAAGTTACATTTCGCTCAAGTTTATGATGTAGATACGGGGAA
GTTAAGAGTAGCCGAATACCGGACGAGTAAAAACACGTGGCTACATCCGT
ATAACGACAGCGTCGTTGCTCGAGTCATTAACAGAGTCGGAGCTCTTGGC
AACTTGGATATGACGTATTCAGAACCTTTACAAGTCGCAAATTACGGAAT
AGGTGGCAATTATGAGGCACATTATGATTTCGCAGAACCACCGCACGATT
CGAGTATCTTTGGTGCATACGACTTTGGAAATCGAATCGCAACTATGTTA
TTCTATTTTGAGACAGTCGAACGAGGAGGTGACACAACCTTTATAAAAGT
CCGACCGGGAATTTCAACGTCTGCTGTCAAAGGTTCGGGTGTTTTCTGGC
ATAATTTGAAGAAGAATGGAGAAGGTGATTTTGAAACGAAACATGCAGCG
TGTCCAGTTCTTCTTGGTGAGAAATGGGTTTCCAATCTCTGGATACACGA
ACATGGCCAAGAGTTTAGACATCCATGTTCTTTGAACCCTGATGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000564XLOC_000564Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000939-proteinTCONS_00000939-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000939-exon-sc0000005-1491911889:1286552..1288924TCONS_00000939-exon-sc0000005-1491911889:1286552..1288924Clytia hemisphaericaexon
TCONS_00000939-exon-sc0000005-1510915933:1286552..1288924TCONS_00000939-exon-sc0000005-1510915933:1286552..1288924Clytia hemisphaericaexon
TCONS_00000939-exon-sc0000005-1575043694:1286552..1288924TCONS_00000939-exon-sc0000005-1575043694:1286552..1288924Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1286552..1288924 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.213129	0.271783	0.259878	0.435857	8.1803	8.33356	27.4011	30.2503	5.99586	3.42251	15.1648	15.1442	11.7321	9.55693	6.61895	20.77	16.0118	15.743	0.121994	0.182369	7.97313	8.69809	4.71821	4.40916	7.72731	8.43596	1.16897	0.623777	0.145573	0.129776
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006620Pro_4_hyd_alph
IPR005123Oxoglu/Fe-dep_dioxygenase
IPR013547Pro_4_hyd_alph_N
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0031418L-ascorbic acid binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491oxidoreductase activity
GO:0004656procollagen-proline 4-dioxygenase activity
GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005783 endoplasmic reticulum
molecular_function GO:0005506 iron ion binding
molecular_function GO:0031418 L-ascorbic acid binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function GO:0004656 procollagen-proline 4-dioxygenase activity
Blast
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BLAST of TCONS_00000939 vs. Swiss-Prot (Human)
Match: P4HA2 (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 3.876e-79
Identity = 182/540 (33.70%), Postives = 270/540 (50.00%), Query Frame = -3 
Query:  605 ALFLGIIVTFCSSLNEMYFTASELKDLVSFERDIGAEFLAYYQRETARLDRLEWFLNDVEMLHNRGLT-KDIVISNPPDSYKLLKRFLTDWKDLDWIRTSEESLRHFEVLTHYQKGITGFKESNELRGSHLLLFRLQDTYKLSVSEMVSGLRQPAHE----LSYDDIHDIAMYANHFWMFQHGIEWASYVTRQFENLEVADDLTLGQYTRLSDIYDIISWGNFKLRNYSEAIKASKKALKLDRTGKRAIKRKENIGWYESYL-------------VSGIHPEGTVEPSNEDPLNRTLQEKRCRREEI-LDQEYVDTLFCKYH--TPHPQFYLKPLKQERVYHEPRIDLYHGILSDFEVDHIKESARMKLHFAQVYDVDTGKLRVAEYRTSKNTWLHPYNDSVVARVINRVGALGNLDMTYSEPLQVANYGIGGNYEAHYDFAEPPHDSSIFGAYDFGNRIATMLFYFETVERGGDTTFIKVRPGISTSAVKGSGVFWHNLKKNGEGDFETKHAACPVLLGEKWVSNLWIHEHGQEFRHPC 2161
            AL +           E + +   + DL+  E+++      Y   E A+L +++ + N +E L ++     +  +++P ++YKL+KR  TDW  L+ +   ++S   F      Q+    F    +  G+   L RLQDTY+L    +  G   P  +    LS DD   +   A +   + H + W   V +Q +  E A        T  S + D +S+  F+L +   A++ +++ L LD + +RA     N+ ++E  L                  PEG  E   +    R + E  CR E + L       LFC+YH     PQ  + P K+E  +  P I  Y+ ++SD E++ IKE A+ KL  A V D  TG L VA YR SK++WL   +D VVARV  R+  +  L +  +E LQVANYG+GG YE H+DF+    +   F     GNR+AT L Y   VE GG T F  +  G +    KG+ VFW+NL ++GEGD+ T+HAACPVL+G KWVSN W HE GQEF  PC
Sbjct:    7 ALLMAWFGVLSCVQAEFFTSIGHMTDLIYAEKELVQSLKEYILVEEAKLSKIKSWANKMEALTSKSAADAEGYLAHPVNAYKLVKRLNTDWPALEDL-VLQDSAAGFIANLSVQRQF--FPTDEDEIGAAKALMRLQDTYRLDPGTISRG-ELPGTKYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEAT-------TTKSQVLDYLSYAVFQLGDLHRALELTRRLLSLDPSHERA---GGNLRYFEQLLEEEREKTLTNQTEAELATPEGIYERPVDYLPERDVYESLCRGEGVKLTPRRQKRLFCRYHHGNRAPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSR-NDERDTFKHLGTGNRVATFLNYMSDVEAGGATVFPDL--GAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRPC 529
The following BLAST results are available for this feature:
BLAST of TCONS_00000939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P4HA23.876e-7933.70Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapie... [more]
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