|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000939 ID=TCONS_00000939|Name=TCONS_00000939|organism=Clytia hemisphaerica|type=transcript|length=2373bp
TTCGAAATATTAATGTACACATGTACAcagtttaaaagtttataatttaa
aagtcaggaatcgaaaaaaaattcatccctGAGCAATGAACAAAAATGTA
ACAGGGTTTTTGCTAAGCTTAGAACAATATAAATCTCGCTAATCAAGGTA
GCAACATATTCTATAAAATAAATGATACGCAAAGTTTATTGgataaaatt
tactttcacGGAAAGAAACTTTCACGAATATAAGAAAGTTCACAAAATCT
TTGTATTTCGCGAGCGTTAACTTTTGCAAAggagtttttcaaaaatgcag
ttgACGATCTCTAATTCGATTCTCAAGGAGTTCAAGGGGTAttggttttt
attgaatatgGGAGGGTATCGAATAGTGGAACGTCACccaatttatattt
tgaataCCACATATTAAAACGATTACTCGTTGATCGGTATATATTCGCAA
AACCTCCTCAAAACCTGGGCTTAAATAAATGTTAAAGTCtggaaaaccaa
aaaaaaactaaagaaaaattaatatcAAATATCGAGGTACTATAAATATA
AGAATGTAATAAACTATGTCCATTGCAGTATTCTTATTCATCAGGGTTCA
AAGAACATGGATGTCTAAACTCTTGGCCATGTTCGTGTATCCAGAGATTG
GAAACCCATTTCTCACCAAGAAGAACTGGACACGCTGCATGTTTCGTTTC
AAAATCACCTTCTCCATTCTTCTTCAAATTATGCCAGAAAACACCCGAAC
CTTTGACAGCAGACGTTGAAATTCCCGGTCGGACTTTTATAAAGGTTGTG
TCACCTCCTCGTTCGACTGTCTCAAAATAGAATAACATAGTTGCGATTCG
ATTTCCAAAGTCGTATGCACCAAAGATACTCGAATCGTGCGGTGGTTCTG
CGAAATCATAATGTGCCTCATAATTGCCACCTATTCCGTAATTTGCGACT
TGTAAAGGTTCTGAATACGTCATATCCAAGTTGCCAAGAGCTCCGACTCT
GTTAATGACTCGAGCAACGACGCTGTCGTTATACGGATGTAGCCACGTGT
TTTTACTCGTCCGGTATTCGGCTACTCTTAACTTCCCCGTATCTACATCA
TAAACTTGAGCGAAATGTAACTTCATTCTCGCCGATTCTTTGATATGGTC
GACTTCGAAATCACTTAATATACCATGGTATAAATCGATGCGCGGTTCAT
GGTATACTCTTTCCTGTTTCAAAGGTTTCAAGTAAAATTGAGGATGAGGA
GTGTGGTACTTGCAGAACAACGTATCCACGTATTCCTGATCCAAAATCTC
CTCACGTCGACATCGTTTCTCTTGTAATGTTCGGTTTAATGGATCTTCAT
TTGATGGTTCCACAGTTCCTTCAGGGTGTATTCCACTAACTAAGTAAGAT
TCATACCAACCGATATTTTCTTTGCGTTTGATCGCACGTTTGCCAGTTCT
ATCCAACTTTAATGCTTTCTTACTGGCTTTGATAGCTTCAGAGTAGTTCC
TAAGCTTAAAGTTTCCCCATGATATAATATCATAGATATCCGACAATCGG
GTATATTGCCCTAGCGTTAAATCATCAGCTACTTCTAGATTTTCAAACTG
TCTTGTAACATAAGACGCCCACTCTATACCGTGTTGAAACATCCAAAAGT
GATTTGCATACATAGCGATATCGTGAATATCATCGTAAGAGAGCTCATGC
GCAGGCTGTCTCAAACCAGAAACCATTTCAGACACACTTAGTTTGTAAGT
GTCCTGGAGTCTGAAAAGCAGAAGATGGGAACCTCTCAGTTCGTTACTTT
CCTTGAAACCAGTTATACCTTTCTGGTAATGTGTCAAAACCTCAAAATGT
CGTAAAGATTCTTCAGAGGTTCTTATCCAATCCAAATCTTTCCAGTCcgt
taaaaatcttttaagcaGCTTGTAAGAATCGGGCGGGTTTGAGATGACAA
TATCTTTGGTTAGCCCTCTGTTATGAAGCATTTCTACGTCGTTTAAAAAC
CATTCCAATCGGTCTAAACGTGCAGTTTCCCTTTGATAGTAAGCCAAGAA
CTCAGCACCAATGTCCCGTTCAAAACTAACCAAATCCTTCAGCTCCGAAG
CTGTAAAATACATTTCATTCAAACTGGAGCAAAATGTCACTATTATTCCA
AGGAATAACGCCATTGATTTTTGAGAAGCCATTTTAGTCACGAAAAAGGA
ACGCGCAGAAGCGCTTCAACCTGCGGCCCTGCGCTCTCCTCAAAATcttt
tatctaatgttcataaatttgaaaatattttaaacaaaagaaactgAGAA
GCTAATTATGCAGCATGTGTTAAAATACAGCATACAGTTTTATGATATTT
CGACACGTTTTTGTTTAATGTAT Run BLAST on NCBI protein sequence of TCONS_00000939-protein >TCONS_00000939-protein ID=TCONS_00000939-protein|Name=TCONS_00000939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=532bp
MASQKSMALFLGIIVTFCSSLNEMYFTASELKDLVSFERDIGAEFLAYYQ
RETARLDRLEWFLNDVEMLHNRGLTKDIVISNPPDSYKLLKRFLTDWKDL
DWIRTSEESLRHFEVLTHYQKGITGFKESNELRGSHLLLFRLQDTYKLSV
SEMVSGLRQPAHELSYDDIHDIAMYANHFWMFQHGIEWASYVTRQFENLE
VADDLTLGQYTRLSDIYDIISWGNFKLRNYSEAIKASKKALKLDRTGKRA
IKRKENIGWYESYLVSGIHPEGTVEPSNEDPLNRTLQEKRCRREEILDQE
YVDTLFCKYHTPHPQFYLKPLKQERVYHEPRIDLYHGILSDFEVDHIKES
ARMKLHFAQVYDVDTGKLRVAEYRTSKNTWLHPYNDSVVARVINRVGALG
NLDMTYSEPLQVANYGIGGNYEAHYDFAEPPHDSSIFGAYDFGNRIATML
FYFETVERGGDTTFIKVRPGISTSAVKGSGVFWHNLKKNGEGDFETKHAA
CPVLLGEKWVSNLWIHEHGQEFRHPCSLNPDE Run BLAST on NCBI transcript from alignment at sc0000005:1286552..1288924 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000939 ID=TCONS_00000939|Name=TCONS_00000939|organism=Clytia hemisphaerica|type=transcript|length=2373bp|location=Sequence derived from alignment at sc0000005:1286552..1288924 (Clytia hemisphaerica)
ATACATTAAACAAAAACGTGTCGAAATATCATAAAACTGTATGCTGTATT
TTAACACATGCTGCATAATTAGCTTCTcagtttcttttgtttaaaatatt
ttcaaatttatgaacattagataaaagATTTTGAGGAGAGCGCAGGGCCG
CAGGTTGAAGCGCTTCTGCGCGTTCCTTTTTCGTGACTAAAATGGCTTCT
CAAAAATCAATGGCGTTATTCCTTGGAATAATAGTGACATTTTGCTCCAG
TTTGAATGAAATGTATTTTACAGCTTCGGAGCTGAAGGATTTGGTTAGTT
TTGAACGGGACATTGGTGCTGAGTTCTTGGCTTACTATCAAAGGGAAACT
GCACGTTTAGACCGATTGGAATGGTTTTTAAACGACGTAGAAATGCTTCA
TAACAGAGGGCTAACCAAAGATATTGTCATCTCAAACCCGCCCGATTCTT
ACAAGCtgcttaaaagatttttaacgGACTGGAAAGATTTGGATTGGATA
AGAACCTCTGAAGAATCTTTACGACATTTTGAGGTTTTGACACATTACCA
GAAAGGTATAACTGGTTTCAAGGAAAGTAACGAACTGAGAGGTTCCCATC
TTCTGCTTTTCAGACTCCAGGACACTTACAAACTAAGTGTGTCTGAAATG
GTTTCTGGTTTGAGACAGCCTGCGCATGAGCTCTCTTACGATGATATTCA
CGATATCGCTATGTATGCAAATCACTTTTGGATGTTTCAACACGGTATAG
AGTGGGCGTCTTATGTTACAAGACAGTTTGAAAATCTAGAAGTAGCTGAT
GATTTAACGCTAGGGCAATATACCCGATTGTCGGATATCTATGATATTAT
ATCATGGGGAAACTTTAAGCTTAGGAACTACTCTGAAGCTATCAAAGCCA
GTAAGAAAGCATTAAAGTTGGATAGAACTGGCAAACGTGCGATCAAACGC
AAAGAAAATATCGGTTGGTATGAATCTTACTTAGTTAGTGGAATACACCC
TGAAGGAACTGTGGAACCATCAAATGAAGATCCATTAAACCGAACATTAC
AAGAGAAACGATGTCGACGTGAGGAGATTTTGGATCAGGAATACGTGGAT
ACGTTGTTCTGCAAGTACCACACTCCTCATCCTCAATTTTACTTGAAACC
TTTGAAACAGGAAAGAGTATACCATGAACCGCGCATCGATTTATACCATG
GTATATTAAGTGATTTCGAAGTCGACCATATCAAAGAATCGGCGAGAATG
AAGTTACATTTCGCTCAAGTTTATGATGTAGATACGGGGAAGTTAAGAGT
AGCCGAATACCGGACGAGTAAAAACACGTGGCTACATCCGTATAACGACA
GCGTCGTTGCTCGAGTCATTAACAGAGTCGGAGCTCTTGGCAACTTGGAT
ATGACGTATTCAGAACCTTTACAAGTCGCAAATTACGGAATAGGTGGCAA
TTATGAGGCACATTATGATTTCGCAGAACCACCGCACGATTCGAGTATCT
TTGGTGCATACGACTTTGGAAATCGAATCGCAACTATGTTATTCTATTTT
GAGACAGTCGAACGAGGAGGTGACACAACCTTTATAAAAGTCCGACCGGG
AATTTCAACGTCTGCTGTCAAAGGTTCGGGTGTTTTCTGGCATAATTTGA
AGAAGAATGGAGAAGGTGATTTTGAAACGAAACATGCAGCGTGTCCAGTT
CTTCTTGGTGAGAAATGGGTTTCCAATCTCTGGATACACGAACATGGCCA
AGAGTTTAGACATCCATGTTCTTTGAACCCTGATGAATAAGAATACTGCA
ATGGACATAGTTTATTACATTCTTATATTTATAGTACCTCGATATTTgat
attaatttttctttagtttttttttggttttccaGACTTTAACATTTATT
TAAGCCCAGGTTTTGAGGAGGTTTTGCGAATATATACCGATCAACGAGTA
ATCGTTTTAATATGTGGtattcaaaatataaattggGTGACGTTCCACTA
TTCGATACCCTCCcatattcaataaaaaccaaTACCCCTTGAACTCCTTG
AGAATCGAATTAGAGATCGTcaactgcatttttgaaaaactccTTTGCAA
AAGTTAACGCTCGCGAAATACAAAGATTTTGTGAACTTTCTTATATTCGT
GAAAGTTTCTTTCCgtgaaagtaaattttatcCAATAAACTTTGCGTATC
ATTTATTTTATAGAATATGTTGCTACCTTGATTAGCGAGATTTATATTGT
TCTAAGCTTAGCAAAAACCCTGTTACATTTTTGTTCATTGCTCagggatg
aattttttttcgattcctgacttttaaattataaacttttaaactgTGTA
CATGTGTACATTAATATTTCGAA Coding sequence (CDS) from alignment at sc0000005:1286552..1288924 >TCONS_00000939 ID=TCONS_00000939|Name=TCONS_00000939|organism=Clytia hemisphaerica|type=CDS|length=1599bp|location=Sequence derived from alignment at sc0000005:1286552..1288924 (Clytia hemisphaerica)
ATGGCTTCTCAAAAATCAATGGCGTTATTCCTTGGAATAATAGTGACATT
TTGCTCCAGTTTGAATGAAATGTATTTTACAGCTTCGGAGCTGAAGGATT
TGGTTAGTTTTGAACGGGACATTGGTGCTGAGTTCTTGGCTTACTATCAA
AGGGAAACTGCACGTTTAGACCGATTGGAATGGTTTTTAAACGACGTAGA
AATGCTTCATAACAGAGGGCTAACCAAAGATATTGTCATCTCAAACCCGC
CCGATTCTTACAAGCtgcttaaaagatttttaacgGACTGGAAAGATTTG
GATTGGATAAGAACCTCTGAAGAATCTTTACGACATTTTGAGGTTTTGAC
ACATTACCAGAAAGGTATAACTGGTTTCAAGGAAAGTAACGAACTGAGAG
GTTCCCATCTTCTGCTTTTCAGACTCCAGGACACTTACAAACTAAGTGTG
TCTGAAATGGTTTCTGGTTTGAGACAGCCTGCGCATGAGCTCTCTTACGA
TGATATTCACGATATCGCTATGTATGCAAATCACTTTTGGATGTTTCAAC
ACGGTATAGAGTGGGCGTCTTATGTTACAAGACAGTTTGAAAATCTAGAA
GTAGCTGATGATTTAACGCTAGGGCAATATACCCGATTGTCGGATATCTA
TGATATTATATCATGGGGAAACTTTAAGCTTAGGAACTACTCTGAAGCTA
TCAAAGCCAGTAAGAAAGCATTAAAGTTGGATAGAACTGGCAAACGTGCG
ATCAAACGCAAAGAAAATATCGGTTGGTATGAATCTTACTTAGTTAGTGG
AATACACCCTGAAGGAACTGTGGAACCATCAAATGAAGATCCATTAAACC
GAACATTACAAGAGAAACGATGTCGACGTGAGGAGATTTTGGATCAGGAA
TACGTGGATACGTTGTTCTGCAAGTACCACACTCCTCATCCTCAATTTTA
CTTGAAACCTTTGAAACAGGAAAGAGTATACCATGAACCGCGCATCGATT
TATACCATGGTATATTAAGTGATTTCGAAGTCGACCATATCAAAGAATCG
GCGAGAATGAAGTTACATTTCGCTCAAGTTTATGATGTAGATACGGGGAA
GTTAAGAGTAGCCGAATACCGGACGAGTAAAAACACGTGGCTACATCCGT
ATAACGACAGCGTCGTTGCTCGAGTCATTAACAGAGTCGGAGCTCTTGGC
AACTTGGATATGACGTATTCAGAACCTTTACAAGTCGCAAATTACGGAAT
AGGTGGCAATTATGAGGCACATTATGATTTCGCAGAACCACCGCACGATT
CGAGTATCTTTGGTGCATACGACTTTGGAAATCGAATCGCAACTATGTTA
TTCTATTTTGAGACAGTCGAACGAGGAGGTGACACAACCTTTATAAAAGT
CCGACCGGGAATTTCAACGTCTGCTGTCAAAGGTTCGGGTGTTTTCTGGC
ATAATTTGAAGAAGAATGGAGAAGGTGATTTTGAAACGAAACATGCAGCG
TGTCCAGTTCTTCTTGGTGAGAAATGGGTTTCCAATCTCTGGATACACGA
ACATGGCCAAGAGTTTAGACATCCATGTTCTTTGAACCCTGATGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000939-exon-sc0000005-1491911889:1286552..1288924 | TCONS_00000939-exon-sc0000005-1491911889:1286552..1288924 | Clytia hemisphaerica | exon |
| TCONS_00000939-exon-sc0000005-1510915933:1286552..1288924 | TCONS_00000939-exon-sc0000005-1510915933:1286552..1288924 | Clytia hemisphaerica | exon |
| TCONS_00000939-exon-sc0000005-1575043694:1286552..1288924 | TCONS_00000939-exon-sc0000005-1575043694:1286552..1288924 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:1286552..1288924 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0031418 | L-ascorbic acid binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| GO:0016491 | oxidoreductase activity |
| GO:0004656 | procollagen-proline 4-dioxygenase activity |
| GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005783 | endoplasmic reticulum |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| cellular_component |
GO:0005783 |
endoplasmic reticulum |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0031418 |
L-ascorbic acid binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| molecular_function |
GO:0016702 |
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| molecular_function |
GO:0004656 |
procollagen-proline 4-dioxygenase activity |
Blast
BLAST of TCONS_00000939 vs. Swiss-Prot (Human)
Match: P4HA2 (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 3.876e-79 Identity = 182/540 (33.70%), Postives = 270/540 (50.00%), Query Frame = -3 Query: 605 ALFLGIIVTFCSSLNEMYFTASELKDLVSFERDIGAEFLAYYQRETARLDRLEWFLNDVEMLHNRGLT-KDIVISNPPDSYKLLKRFLTDWKDLDWIRTSEESLRHFEVLTHYQKGITGFKESNELRGSHLLLFRLQDTYKLSVSEMVSGLRQPAHE----LSYDDIHDIAMYANHFWMFQHGIEWASYVTRQFENLEVADDLTLGQYTRLSDIYDIISWGNFKLRNYSEAIKASKKALKLDRTGKRAIKRKENIGWYESYL-------------VSGIHPEGTVEPSNEDPLNRTLQEKRCRREEI-LDQEYVDTLFCKYH--TPHPQFYLKPLKQERVYHEPRIDLYHGILSDFEVDHIKESARMKLHFAQVYDVDTGKLRVAEYRTSKNTWLHPYNDSVVARVINRVGALGNLDMTYSEPLQVANYGIGGNYEAHYDFAEPPHDSSIFGAYDFGNRIATMLFYFETVERGGDTTFIKVRPGISTSAVKGSGVFWHNLKKNGEGDFETKHAACPVLLGEKWVSNLWIHEHGQEFRHPC 2161
AL + E + + + DL+ E+++ Y E A+L +++ + N +E L ++ + +++P ++YKL+KR TDW L+ + ++S F Q+ F + G+ L RLQDTY+L + G P + LS DD + A + + H + W V +Q + E A T S + D +S+ F+L + A++ +++ L LD + +RA N+ ++E L PEG E + R + E CR E + L LFC+YH PQ + P K+E + P I Y+ ++SD E++ IKE A+ KL A V D TG L VA YR SK++WL +D VVARV R+ + L + +E LQVANYG+GG YE H+DF+ + F GNR+AT L Y VE GG T F + G + KG+ VFW+NL ++GEGD+ T+HAACPVL+G KWVSN W HE GQEF PC
Sbjct: 7 ALLMAWFGVLSCVQAEFFTSIGHMTDLIYAEKELVQSLKEYILVEEAKLSKIKSWANKMEALTSKSAADAEGYLAHPVNAYKLVKRLNTDWPALEDL-VLQDSAAGFIANLSVQRQF--FPTDEDEIGAAKALMRLQDTYRLDPGTISRG-ELPGTKYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEAT-------TTKSQVLDYLSYAVFQLGDLHRALELTRRLLSLDPSHERA---GGNLRYFEQLLEEEREKTLTNQTEAELATPEGIYERPVDYLPERDVYESLCRGEGVKLTPRRQKRLFCRYHHGNRAPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSR-NDERDTFKHLGTGNRVATFLNYMSDVEAGGATVFPDL--GAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRPC 529
The following BLAST results are available for this feature:
|
