TCONS_00000937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000937
Unique NameTCONS_00000937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000937 ID=TCONS_00000937|Name=TCONS_00000937|organism=Clytia hemisphaerica|type=transcript|length=440bp
AATTATTGGTTCAGCAATCATGTTCAGTTTAATACTGTCTTTAATCCTAG
TCTTAATACTAAAGAGGACTTTAACCAACACTGGCCAGACCATTGCCAAT
AACATAAGTTTAAAGAATAATCGTAAAGCTATGAACAGACTAGCAGCTAT
TTTTGTTGTCTACGTCATCTCAATATTCCCTTTATCAGTTACGTTGCTTT
TTATGGGACTGACTACGTCTTTATTTCCAGATACGTATGCCAGTAAGGAG
GAACTATTAACCAATCACGCTATTATGATTTGGAGCTACCTTATCTCCAA
TATGTTCAGTGGATTGAATTCTTTGGTGTATATTTTATGGAATAATAAGA
TTATGGCATATTATAAAAATTTGTTCTGTATAGGAAATGCTACTCGGAAT
TACAGATGTGGCAGCTCGAAAGAGACATCTAATAGTGGAC
Run BLAST on NCBI

protein sequence of TCONS_00000937-protein

>TCONS_00000937-protein ID=TCONS_00000937-protein|Name=TCONS_00000937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
IIGSAIMFSLILSLILVLILKRTLTNTGQTIANNISLKNNRKAMNRLAAI
FVVYVISIFPLSVTLLFMGLTTSLFPDTYASKEELLTNHAIMIWSYLISN
MFSGLNSLVYILWNNKIMAYYKNLFCIGNATRNYRCGSSKETSNSG
Run BLAST on NCBI

transcript from alignment at sc0000005:1222879..1223318

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000937 ID=TCONS_00000937|Name=TCONS_00000937|organism=Clytia hemisphaerica|type=transcript|length=440bp|location=Sequence derived from alignment at sc0000005:1222879..1223318 (Clytia hemisphaerica)
GTCCACTATTAGATGTCTCTTTCGAGCTGCCACATCTGTAATTCCGAGTA
GCATTTCCTATACAGAACAAATTTTTATAATATGCCATAATCTTATTATT
CCATAAAATATACACCAAAGAATTCAATCCACTGAACATATTGGAGATAA
GGTAGCTCCAAATCATAATAGCGTGATTGGTTAATAGTTCCTCCTTACTG
GCATACGTATCTGGAAATAAAGACGTAGTCAGTCCCATAAAAAGCAACGT
AACTGATAAAGGGAATATTGAGATGACGTAGACAACAAAAATAGCTGCTA
GTCTGTTCATAGCTTTACGATTATTCTTTAAACTTATGTTATTGGCAATG
GTCTGGCCAGTGTTGGTTAAAGTCCTCTTTAGTATTAAGACTAGGATTAA
AGACAGTATTAAACTGAACATGATTGCTGAACCAATAATT

Coding sequence (CDS) from alignment at sc0000005:1222879..1223318

>TCONS_00000937 ID=TCONS_00000937|Name=TCONS_00000937|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at sc0000005:1222879..1223318 (Clytia hemisphaerica)
TCCACTATTAGATGTCTCTTTCGAGCTGCCACATCTGTAATTCCGAGTAG
CATTTCCTATACAGAACAAATTTTTATAATATGCCATAATCTTATTATTC
CATAAAATATACACCAAAGAATTCAATCCACTGAACATATTGGAGATAAG
GTAGCTCCAAATCATAATAGCGTGATTGGTTAATAGTTCCTCCTTACTGG
CATACGTATCTGGAAATAAAGACGTAGTCAGTCCCATAAAAAGCAACGTA
ACTGATAAAGGGAATATTGAGATGACGTAGACAACAAAAATAGCTGCTAG
TCTGTTCATAGCTTTACGATTATTCTTTAAACTTATGTTATTGGCAATGG
TCTGGCCAGTGTTGGTTAAAGTCCTCTTTAGTATTAAGACTAGGATTAAA
GACAGTATTAAACTGAACATGATTGCTGAACCAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000562XLOC_000562Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000937-proteinTCONS_00000937-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000937-exon-sc0000005-1491911889:1222879..1223318TCONS_00000937-exon-sc0000005-1491911889:1222879..1223318Clytia hemisphaericaexon
TCONS_00000937-exon-sc0000005-1510915933:1222879..1223318TCONS_00000937-exon-sc0000005-1510915933:1222879..1223318Clytia hemisphaericaexon
TCONS_00000937-exon-sc0000005-1575043694:1222879..1223318TCONS_00000937-exon-sc0000005-1575043694:1222879..1223318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1222879..1223318 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.299536	0.173895	0.170129	0.207116	0	0	0.184856	0.258843	0	0.311201	0	0.817147	1.06077	0	0.0935893	0.115294	0.236346	2.77546	2.22095	0.890958	0.869156	0	0.160096	0.494687	0.588662	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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