TCONS_00000935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000935
Unique NameTCONS_00000935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000935 ID=TCONS_00000935|Name=TCONS_00000935|organism=Clytia hemisphaerica|type=transcript|length=708bp
CTTACATTCTCTCAGAGTTAACACCTGTTGGTAATCTGATCAAACTATGG
CGCTTTTAGTAGTATTTTTGTCACTGTTGTTTGCAGAATGTGTATTTTGC
AGACCAACATCGGATGCAAAATCGACACTGAAAGACAATcataatgaaaa
tcaaaatgaaaaattgtttcTTGGAGGTTTTCAAATTGAAGAGAATGGAA
CTCCTTCAAAATTTGCAATGCTTTTACGTGAAGAACTTCATcaacaagaa
aaagaaatttctaagCATCAGGATGAGTCTGGTCCTTCAAATACACGCAG
TCGTCAATCCAGATCACTTTACTTCAAATTGTGTGTGCGATATCGACGTG
GACGATGTATAAGGAGAAAAAGATTTGGTTTATGGCATAGCTACAAGAGG
GGTGGTGGTACACCAAAATCAAGTTGATGATgcttttaaaacattaaaat
gatATCATATATAAAGACAACAAGATGAGACGATGGTTAAATACTCAAAT
CAATTTCTtcgcaaaaatcttttttgtcacCACACGGAGAGGTACAGTGG
gaactaaaaaatgaaatatttcacatttattaattttttttaacatataA
CTTGACAAAGAATGCTGGCTATTctactaaattttaaatttcattttcgt
catttttataaagatttgtgtaaatattttattacttttagaACAAATAG
AATTAGAG
Run BLAST on NCBI

protein sequence of TCONS_00000935-protein

>TCONS_00000935-protein ID=TCONS_00000935-protein|Name=TCONS_00000935-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MALLVVFLSLLFAECVFCRPTSDAKSTLKDNHNENQNEKLFLGGFQIEEN
GTPSKFAMLLREELHQQEKEISKHQDESGPSNTRSRQSRSLYFKLCVRYR
RGRCIRRKRFGLWHSYKRGGGTPKSS
Run BLAST on NCBI

transcript from alignment at sc0000005:1145348..1146055

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000935 ID=TCONS_00000935|Name=TCONS_00000935|organism=Clytia hemisphaerica|type=transcript|length=708bp|location=Sequence derived from alignment at sc0000005:1145348..1146055 (Clytia hemisphaerica)
CTCTAATTCTATTTGTtctaaaagtaataaaatatttacacaaatcttta
taaaaatgacgaaaatgaaatttaaaatttagtagAATAGCCAGCATTCT
TTGTCAAGTtatatgttaaaaaaaattaataaatgtgaaatatttcattt
tttagttcCCACTGTACCTCTCCGTGTGgtgacaaaaaagatttttgcga
AGAAATTGATTTGAGTATTTAACCATCGTCTCATCTTGTTGTCTTTATAT
ATGATatcattttaatgttttaaaagcATCATCAACTTGATTTTGGTGTA
CCACCACCCCTCTTGTAGCTATGCCATAAACCAAATCTTTTTCTCCTTAT
ACATCGTCCACGTCGATATCGCACACACAATTTGAAGTAAAGTGATCTGG
ATTGACGACTGCGTGTATTTGAAGGACCAGACTCATCCTGATGcttagaa
atttctttttcttgttgATGAAGTTCTTCACGTAAAAGCATTGCAAATTT
TGAAGGAGTTCCATTCTCTTCAATTTGAAAACCTCCAAgaaacaattttt
cattttgattttcattatgATTGTCTTTCAGTGTCGATTTTGCATCCGAT
GTTGGTCTGCAAAATACACATTCTGCAAACAACAGTGACAAAAATACTAC
TAAAAGCGCCATAGTTTGATCAGATTACCAACAGGTGTTAACTCTGAGAG
AATGTAAG

Coding sequence (CDS) from alignment at sc0000005:1145348..1146055

>TCONS_00000935 ID=TCONS_00000935|Name=TCONS_00000935|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000005:1145348..1146055 (Clytia hemisphaerica)
TCAACTTGATTTTGGTGTACCACCACCCCTCTTGTAGCTATGCCATAAAC
CAAATCTTTTTCTCCTTATACATCGTCCACGTCGATATCGCACACACAAT
TTGAAGTAAAGTGATCTGGATTGACGACTGCGTGTATTTGAAGGACCAGA
CTCATCCTGATGcttagaaatttctttttcttgttgATGAAGTTCTTCAC
GTAAAAGCATTGCAAATTTTGAAGGAGTTCCATTCTCTTCAATTTGAAAA
CCTCCAAgaaacaatttttcattttgattttcattatgATTGTCTTTCAG
TGTCGATTTTGCATCCGATGTTGGTCTGCAAAATACACATTCTGCAAACA
ACAGTGACAAAAATACTACTAAAAGCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000560XLOC_000560Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000935-proteinTCONS_00000935-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000935-exon-sc0000005-1491911889:1145348..1146055TCONS_00000935-exon-sc0000005-1491911889:1145348..1146055Clytia hemisphaericaexon
TCONS_00000935-exon-sc0000005-1510915933:1145348..1146055TCONS_00000935-exon-sc0000005-1510915933:1145348..1146055Clytia hemisphaericaexon
TCONS_00000935-exon-sc0000005-1575043694:1145348..1146055TCONS_00000935-exon-sc0000005-1575043694:1145348..1146055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1145348..1146055 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0958792	0	0	0	0	0	0	0	1.41855	1.22764	3.5527	3.98589	0.106746	0	0	0.0790874	0	0.301766	0.0815192	0	0	0	0.097489	0.104043	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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