TCONS_00000933 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000933
Unique NameTCONS_00000933
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length644

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000933 ID=TCONS_00000933|Name=TCONS_00000933|organism=Clytia hemisphaerica|type=transcript|length=644bp
AAACAAGAGGCccaagggcatgaaggcccagagtctaaaaatttcttctc
gcgaaaatttcttcccttaaggtagtttgTTTTTGCTTCCGAAGTCCTTA
CTCGCACAAATTTTGCACGGCGGGATCGCAAAAATCATGCTTTGGAAATT
TAGAAGGGAACAGGTACAAGAAATGAGAGTTAAATAACAATATCaatgta
tttatttcttttaaaccGAGCAAACTCAAGGAATTCGAATTGGTTGAGTA
AGCTGTAAGATGGGTCGAATTCGCTATATAAATCTGAGCCGAGTAAACCG
AGTAGATACCGAGTATATCAATGTAAGTCGAGTAGATTCAAGTTTAGCCG
AGTTTTCCGAATAAATCAGTGTAACAGAGTTAAACGAGTTTGCCGAGTAA
ATCCGTATAAGCTGAATAGATTCCAGATTAGCTGAGTTTTTAAAGTAAAT
CCGTGAAAGCTGAATAGATGCTAGTTCGCTAATTTATAACTATTGTTGCA
CTCCACCTGATGATGATGCAATGATacctaaaacagaaaaaattcaatat
atCATAAATGTATACATCTCAAGATCTTCAATTAAAaggggtgttttaaa
attaaacaacattGATCTGTTGATGTGATTCTATGCAATTGAGC
Run BLAST on NCBI

transcript from alignment at sc0000005:1095995..1096638

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000933 ID=TCONS_00000933|Name=TCONS_00000933|organism=Clytia hemisphaerica|type=transcript|length=644bp|location=Sequence derived from alignment at sc0000005:1095995..1096638 (Clytia hemisphaerica)
GCTCAATTGCATAGAATCACATCAACAGATCaatgttgtttaattttaaa acacccctTTTAATTGAAGATCTTGAGATGTATACATTTATGatatattg aattttttctgttttaggtATCATTGCATCATCATCAGGTGGAGTGCAAC AATAGTTATAAATTAGCGAACTAGCATCTATTCAGCTTTCACGGATTTAC TTTAAAAACTCAGCTAATCTGGAATCTATTCAGCTTATACGGATTTACTC GGCAAACTCGTTTAACTCTGTTACACTGATTTATTCGGAAAACTCGGCTA AACTTGAATCTACTCGACTTACATTGATATACTCGGTATCTACTCGGTTT ACTCGGCTCAGATTTATATAGCGAATTCGACCCATCTTACAGCTTACTCA ACCAATTCGAATTCCTTGAGTTTGCTCggtttaaaagaaataaatacatt GATATTGTTATTTAACTCTCATTTCTTGTACCTGTTCCCTTCTAAATTTC CAAAGCATGATTTTTGCGATCCCGCCGTGCAAAATTTGTGCGAGTAAGGA CTTCGGAAGCAAAAAcaaactaccttaagggaagaaattttcgcgagaag aaatttttagactctgggccttcatgcccttggGCCTCTTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000558XLOC_000558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000933-exon-sc0000005-1491911889:1095995..1096638TCONS_00000933-exon-sc0000005-1491911889:1095995..1096638Clytia hemisphaericaexon
TCONS_00000933-exon-sc0000005-1510915933:1095995..1096638TCONS_00000933-exon-sc0000005-1510915933:1095995..1096638Clytia hemisphaericaexon
TCONS_00000933-exon-sc0000005-1575043694:1095995..1096638TCONS_00000933-exon-sc0000005-1575043694:1095995..1096638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1095995..1096638 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.829072 0.755779 2.18686 2.77464 4.32888 2.02411 2.8409 2.36088 1.56925 1.31049 3.26625 2.3578 2.13045 1.52622 0.18801 0.509463 0.19346 0.127467 0.260094 0.640315 0.583223 0.422469 0 0.290285 2.19098 2.6201 0.457655 0.254965 0.0945658 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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