TCONS_00000932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000932
Unique NameTCONS_00000932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000932 ID=TCONS_00000932|Name=TCONS_00000932|organism=Clytia hemisphaerica|type=transcript|length=465bp
GGAGAAGCTGCGTACAATAaagctgacgtcatcataaatattGTTACTGC
TTTAAGGAAACGAGCAGAAGTGATTGATTTCTCTCATCATTTCATTGAGT
CAGCATTTGGCATTCTCAGAGTTGCCAAATACAATAAAGAATTCCCAAAC
TGGAAATTTCTCAAACCCTTAAGCATTTCATTAGAAATAGCATTATTGGT
TACAACTGGGTTGGCATTATTCATCATATCTGTAATTGAGAAAAGTGCAG
CAAATATGAGACGTAAACCTTCAATATTTTTCCCTGAGATCATGGCTTAC
GTTTTTGGTTTGATGTTTCAAAGAGATATGGGCGGTATGAATCCTCGAAT
ATGGTCAGGGCGTATTGTTGCTCTTGGTTATGCATCTGCAATGACCATCA
TCATGTCCATCTATACTGCCAGAATCACTGCGAACTCTATTGGACATGTA
GTGATCGAagatttt
Run BLAST on NCBI

protein sequence of TCONS_00000932-protein

>TCONS_00000932-protein ID=TCONS_00000932-protein|Name=TCONS_00000932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
GEAAYNKADVIINIVTALRKRAEVIDFSHHFIESAFGILRVAKYNKEFPN
WKFLKPLSISLEIALLVTTGLALFIISVIEKSAANMRRKPSIFFPEIMAY
VFGLMFQRDMGGMNPRIWSGRIVALGYASAMTIIMSIYTARITANSIGHV
VIEDF
Run BLAST on NCBI

transcript from alignment at sc0000005:1035193..1035657

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000932 ID=TCONS_00000932|Name=TCONS_00000932|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at sc0000005:1035193..1035657 (Clytia hemisphaerica)
aaaatctTCGATCACTACATGTCCAATAGAGTTCGCAGTGATTCTGGCAG TATAGATGGACATGATGATGGTCATTGCAGATGCATAACCAAGAGCAACA ATACGCCCTGACCATATTCGAGGATTCATACCGCCCATATCTCTTTGAAA CATCAAACCAAAAACGTAAGCCATGATCTCAGGGAAAAATATTGAAGGTT TACGTCTCATATTTGCTGCACTTTTCTCAATTACAGATATGATGAATAAT GCCAACCCAGTTGTAACCAATAATGCTATTTCTAATGAAATGCTTAAGGG TTTGAGAAATTTCCAGTTTGGGAATTCTTTATTGTATTTGGCAACTCTGA GAATGCCAAATGCTGACTCAATGAAATGATGAGAGAAATCAATCACTTCT GCTCGTTTCCTTAAAGCAGTAACaatatttatgatgacgtcagcttTATT GTACGCAGCTTCTCC

Coding sequence (CDS) from alignment at sc0000005:1035193..1035657

>TCONS_00000932 ID=TCONS_00000932|Name=TCONS_00000932|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000005:1035193..1035657 (Clytia hemisphaerica)
aaaatctTCGATCACTACATGTCCAATAGAGTTCGCAGTGATTCTGGCAG
TATAGATGGACATGATGATGGTCATTGCAGATGCATAACCAAGAGCAACA
ATACGCCCTGACCATATTCGAGGATTCATACCGCCCATATCTCTTTGAAA
CATCAAACCAAAAACGTAAGCCATGATCTCAGGGAAAAATATTGAAGGTT
TACGTCTCATATTTGCTGCACTTTTCTCAATTACAGATATGATGAATAAT
GCCAACCCAGTTGTAACCAATAATGCTATTTCTAATGAAATGCTTAAGGG
TTTGAGAAATTTCCAGTTTGGGAATTCTTTATTGTATTTGGCAACTCTGA
GAATGCCAAATGCTGACTCAATGAAATGATGAGAGAAATCAATCACTTCT
GCTCGTTTCCTTAAAGCAGTAACaatatttatgatgacgtcagcttTATT
GTACGCAGCTTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000557XLOC_000557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000932-exon-sc0000005-1491911889:1035193..1035657TCONS_00000932-exon-sc0000005-1491911889:1035193..1035657Clytia hemisphaericaexon
TCONS_00000932-exon-sc0000005-1510915933:1035193..1035657TCONS_00000932-exon-sc0000005-1510915933:1035193..1035657Clytia hemisphaericaexon
TCONS_00000932-exon-sc0000005-1575043694:1035193..1035657TCONS_00000932-exon-sc0000005-1575043694:1035193..1035657Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000932-proteinTCONS_00000932-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1035193..1035657 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.135142 0 0 0 0 0 0.667213 0.350349 0.144654 0.842431 0.184594 0 0 0 0 0 0.213265 0 0.308317 1.20593 0.392139 0.317798 0.577848 0.148793 0.265588 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0004970 ionotropic glutamate receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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