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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000922 ID=TCONS_00000922|Name=TCONS_00000922|organism=Clytia hemisphaerica|type=transcript|length=1887bp
TAGATTTGCTAGTTATAATAACACTAAATGTGAGCGATTCAACTCGAAAT
TCTACGTTCCTGGGACGGAAGCGGTGGATGCATTTACGCAGGATTGGCGT
TTTGAAAACAACCTTTGGGTTCCTCCGGCTAATTTAATCACCCGGGTGCT
GAGAACTATCATATCTACGCATGGTATTAGAGGGGTTTTGATAATTCCGT
ATTGGCGTTCCGCTCCATTTTGGTCACTGCTTCAAAACGGAccgatattt
tcaagttttgttgTCGATCATATGGTTTTCAAAGATACTGCTGGTATCCT
GAAGTTGGGCAACTACAAGTATTCCCTTCTCGGTTCTCCTCATTATCGTG
GGAGTATTGTGgcatttttgataaaaagttgAGTTTTGGGTTCTGGGCCT
TATTGGATAAGCTGTCCCACCTTCCCAAGTACTTTCGCCCAGGTGGGCAG
GGTTAGCCTCAGAGGTAACCCATTATTCATTAGATTTTTGGACCTAGATG
GGGTCCTCCTATGCTCAACCGGGTTGAGAGAAATAGAAAGTGTAACGGGG
TTACACTGTGTAACTGGATTACACCGTGGCTTGGGCCACTTGCTCAGAAG
GTTTTGTAAGAAAAATTGGCCTTATCAGGTTATTTAACCCAAGCTGACTA
ATTCTGCATTTTTAGGATCCAGCTCGCTTCAAATCGTTAACCAGGTACAG
GATGACCACCTGAAGGAAGTAGCACACGGTTTACAAGACGTGCTGTCGAA
ATCAAGAGCGAATAACACGATAAAGAAATATGCTACCTACTTCAAGCGTT
GGTCAAATTGGAGTGCAAAGTTCGATGAAGTTGTTGAATTCCCTGCCAAA
GACGTACACGTGGTGCTGTTTTTCGTCAGCCTCATACAGTAGGGAATATC
ATTCTCAGTGATCGAAAGCTGCTTTTACGCAATCAAACACACTCATAATG
TCAATAACCAACCTGACCCAACAGATTCAGTATTGGCCAGTTGTGCCTTA
GAGGCGTACGTACTTGTTCTAAGCCAGTGACCAAGAAGCTTCCAATCACA
CCTGAACACATCAAACGAGTGTACGAACCCATTATCGAGGAGGGTAAGAT
GTCTTTGCTATCCTTGAGGGATTTTTCATTGATATTGTTATGTTTTTGTG
GATTTCTGAGGTTCGAGGAAGCGGCTAACATCACTCTTGGGGGCGTAGTA
TTCAACCAAATGTACATGAAAATATTCATTGAAGAATCAAAAACTGATCA
ATATAGGATTGGAGCCTGGGTATTCATTGCCAAGCTAGACTCCCAACTTT
TCCCCATCGACTTTATCAGAAATTATATTAATAGGGCTGAGATCGTTAAC
GATGATGAGTTTTTGTTCAGGGGAATgtctttctttaaaactttgaatga
CCACAAGCTGAAATGTCGAAATAAGCCTACTTCTTGTTCTACTGCAAGAT
CAGCAGGAAGTCTTGTGAAACGAATCGGGGTCAATGAAAAGCTATTTGGG
ACCCACAGCATGCGTCGTGGAGGAGCCACATGTGCCGCAAACAACGGGGT
AAAGGATCATCTTTTCCAGAAACACGGTAGATGGAAATCTGTCAGTGCTA
AAGATGGCTATGTGGATGATAATCTGAAACAACTGATGTCTGTTTCTTTG
GGGCTAGGCCTCTAAAAGTTTTATAGTATATGATGATTATTTAGAGGATT
TGATGTCTAATTCTGTGAGGCTAGGCCTCTGATgttatttcttatatttt
tcaatcgcgTTCTTCTGTTACAACCATTTACAGGGCTTTCTAGACAACCC
ACTAACGTGATAACNTATAGATCGCGTTCTTCTGCTACAACCATTTACAG
GGCTTTCTAGACGACCCACTAACGTGATAAGAAGAGA Run BLAST on NCBI protein sequence of TCONS_00000922-protein >TCONS_00000922-protein ID=TCONS_00000922-protein|Name=TCONS_00000922-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MSLLSLRDFSLILLCFCGFLRFEEAANITLGGVVFNQMYMKIFIEESKTD
QYRIGAWVFIAKLDSQLFPIDFIRNYINRAEIVNDDEFLFRGMSFFKTLN
DHKLKCRNKPTSCSTARSAGSLVKRIGVNEKLFGTHSMRRGGATCAANNG
VKDHLFQKHGRWKSVSAKDGYVDDNLKQLMSVSLGLGL Run BLAST on NCBI transcript from alignment at sc0000005:627037..628923 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000922 ID=TCONS_00000922|Name=TCONS_00000922|organism=Clytia hemisphaerica|type=transcript|length=1887bp|location=Sequence derived from alignment at sc0000005:627037..628923 (Clytia hemisphaerica)
TCTCTTCTTATCACGTTAGTGGGTCGTCTAGAAAGCCCTGTAAATGGTTG
TAGCAGAAGAACGCGATCTATANGTTATCACGTTAGTGGGTTGTCTAGAA
AGCCCTGTAAATGGTTGTAACAGAAGAAcgcgattgaaaaatataagaaa
taacATCAGAGGCCTAGCCTCACAGAATTAGACATCAAATCCTCTAAATA
ATCATCATATACTATAAAACTTTTAGAGGCCTAGCCCCAAAGAAACAGAC
ATCAGTTGTTTCAGATTATCATCCACATAGCCATCTTTAGCACTGACAGA
TTTCCATCTACCGTGTTTCTGGAAAAGATGATCCTTTACCCCGTTGTTTG
CGGCACATGTGGCTCCTCCACGACGCATGCTGTGGGTCCCAAATAGCTTT
TCATTGACCCCGATTCGTTTCACAAGACTTCCTGCTGATCTTGCAGTAGA
ACAAGAAGTAGGCTTATTTCGACATTTCAGCTTGTGGtcattcaaagttt
taaagaaagacATTCCCCTGAACAAAAACTCATCATCGTTAACGATCTCA
GCCCTATTAATATAATTTCTGATAAAGTCGATGGGGAAAAGTTGGGAGTC
TAGCTTGGCAATGAATACCCAGGCTCCAATCCTATATTGATCAGTTTTTG
ATTCTTCAATGAATATTTTCATGTACATTTGGTTGAATACTACGCCCCCA
AGAGTGATGTTAGCCGCTTCCTCGAACCTCAGAAATCCACAAAAACATAA
CAATATCAATGAAAAATCCCTCAAGGATAGCAAAGACATCTTACCCTCCT
CGATAATGGGTTCGTACACTCGTTTGATGTGTTCAGGTGTGATTGGAAGC
TTCTTGGTCACTGGCTTAGAACAAGTACGTACGCCTCTAAGGCACAACTG
GCCAATACTGAATCTGTTGGGTCAGGTTGGTTATTGACATTATGAGTGTG
TTTGATTGCGTAAAAGCAGCTTTCGATCACTGAGAATGATATTCCCTACT
GTATGAGGCTGACGAAAAACAGCACCACGTGTACGTCTTTGGCAGGGAAT
TCAACAACTTCATCGAACTTTGCACTCCAATTTGACCAACGCTTGAAGTA
GGTAGCATATTTCTTTATCGTGTTATTCGCTCTTGATTTCGACAGCACGT
CTTGTAAACCGTGTGCTACTTCCTTCAGGTGGTCATCCTGTACCTGGTTA
ACGATTTGAAGCGAGCTGGATCCTAAAAATGCAGAATTAGTCAGCTTGGG
TTAAATAACCTGATAAGGCCAATTTTTCTTACAAAACCTTCTGAGCAAGT
GGCCCAAGCCACGGTGTAATCCAGTTACACAGTGTAACCCCGTTACACTT
TCTATTTCTCTCAACCCGGTTGAGCATAGGAGGACCCCATCTAGGTCCAA
AAATCTAATGAATAATGGGTTACCTCTGAGGCTAACCCTGCCCACCTGGG
CGAAAGTACTTGGGAAGGTGGGACAGCTTATCCAATAAGGCCCAGAACCC
AAAACTcaactttttatcaaaaatgcCACAATACTCCCACGATAATGAGG
AGAACCGAGAAGGGAATACTTGTAGTTGCCCAACTTCAGGATACCAGCAG
TATCTTTGAAAACCATATGATCGAcaacaaaacttgaaaatatcggTCCG
TTTTGAAGCAGTGACCAAAATGGAGCGGAACGCCAATACGGAATTATCAA
AACCCCTCTAATACCATGCGTAGATATGATAGTTCTCAGCACCCGGGTGA
TTAAATTAGCCGGAGGAACCCAAAGGTTGTTTTCAAAACGCCAATCCTGC
GTAAATGCATCCACCGCTTCCGTCCCAGGAACGTAGAATTTCGAGTTGAA
TCGCTCACATTTAGTGTTATTATAACTAGCAAATCTA Coding sequence (CDS) from alignment at sc0000005:627037..628923 >TCONS_00000922 ID=TCONS_00000922|Name=TCONS_00000922|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0000005:627037..628923 (Clytia hemisphaerica)
TTAGAGGCCTAGCCCCAAAGAAACAGACATCAGTTGTTTCAGATTATCAT
CCACATAGCCATCTTTAGCACTGACAGATTTCCATCTACCGTGTTTCTGG
AAAAGATGATCCTTTACCCCGTTGTTTGCGGCACATGTGGCTCCTCCACG
ACGCATGCTGTGGGTCCCAAATAGCTTTTCATTGACCCCGATTCGTTTCA
CAAGACTTCCTGCTGATCTTGCAGTAGAACAAGAAGTAGGCTTATTTCGA
CATTTCAGCTTGTGGtcattcaaagttttaaagaaagacATTCCCCTGAA
CAAAAACTCATCATCGTTAACGATCTCAGCCCTATTAATATAATTTCTGA
TAAAGTCGATGGGGAAAAGTTGGGAGTCTAGCTTGGCAATGAATACCCAG
GCTCCAATCCTATATTGATCAGTTTTTGATTCTTCAATGAATATTTTCAT
GTACATTTGGTTGAATACTACGCCCCCAAGAGTGATGTTAGCCGCTTCCT
CGAACCTCAGAAATCCACAAAAACATAACAATATCAATGAAAAATCCCTC
AAGGATAGCAAAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000922-exon-sc0000005-1491911889:627037..628923 | TCONS_00000922-exon-sc0000005-1491911889:627037..628923 | Clytia hemisphaerica | exon |
| TCONS_00000922-exon-sc0000005-1510915933:627037..628923 | TCONS_00000922-exon-sc0000005-1510915933:627037..628923 | Clytia hemisphaerica | exon |
| TCONS_00000922-exon-sc0000005-1575043694:627037..628923 | TCONS_00000922-exon-sc0000005-1575043694:627037..628923 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:627037..628923 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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