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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000914 ID=TCONS_00000914|Name=TCONS_00000914|organism=Clytia hemisphaerica|type=transcript|length=1475bp
ACAaacatttctgaaaatttccCTCCCACTTGGGTTGGTCGAAGACAAAC
GtataaaacgaaatatgaattcTTCAATATGAAAAGATAAAACACAAACT
TTAATTATCAAATATTGTATCTCTCTTTTtgtatcaaaaattatatatac
taaaattctattattatttttttccacaaaaatatcatatttatatacat
ttaacaaacttttaatagaattattttattttacatgACATAATAATTTA
ATTCACCTGGggaaatcaaatttctaaaatcttcaaaataattttcaagc
AGATATGGTAAAGAAGAGCTAAAATGAATTTACTCAAAATTCACGTTGAC
ACTTACCCAGTATCCTCAAAACTAaggttttttctaaaaaagaatgtGCA
GAATTTCTAGGAGACAAAATAGAGTGCTTTTTGCGTTATAAAACACAAAT
AGCAAAAAACAAATCCCTCGGTTTGATAATCCCTCGGTGTTAAAGTCTAT
TTTccgctgttttttatctttcatAATTCCGTCCATCAAATTCTCCGTCA
CTCCGGTCAGAAGTACGTCTTTGCGTGGTCGTCGCCGATGGTGTCATCGC
TTGTTTCGGCTCACCTAGCACGGATTGTAGAAGTTTAATATAACGAATGG
CCCCTCGTAAAGTTTCAACTTTCGACAATCGTTTCTCAGTCGGCTCCAAC
GGTAAATGGTCGCGTAACCTCGCGTATCCTTCGTTTACGTTCCGTACTCT
CATGCGTTCGCGTTCATTACGCTTACGTATGAAACCTGGTTCGCTGCTGA
GGCATTCTTGTAAGTAGGGATACGTAAAGAATCCGTAAGGCACTGATGGC
GTATCATACGGCGGAGATTGTTGGTGCACATTAACCCAATGGTCAACCAT
AGCTTGGTTATGACGTAACTCGTAATCCGCTAATAATGCTTGAGGGTCGA
CACTGCTACTGCTCACAACCGGTGGATAGTCGTAAACTTCGAAAGGTACC
GGcgaaaaagcactattttcagaATACTGGAACGTAGATGCCATGCTGTA
CATGTGTTAAACTTtgacttgaatttttttgtatgATTTTCAATGATCGA
CTTGACTcgaatctcaaaaaaaatttatgtgtATTGCAAAGTAATACGAC
TTGCAATTTATGCGATTTTTCTTTCGCTTTCGAAATAAAGGACCTGGGCC
CGAATAATCATTTAAATTTCTGTTTAGTCTATTGTTTGAATAAGACTTCT
TTGTTGCGTTTTatgtacattttatttttttctcttccTATTCTGATGTT
AAAATCTCGGATGAGGAAATTTCCAAGGACGAAAAAGGACTGGGCTTTAG
TTTACACAGCTCTGCAagcaaattttaacaaaaatttgaggaagaaaatg
aaattgtaatTTTCAAGATTAAAGTTAACAAAACGatcaattataaaaaa
atgatcaaaaaaagaaaaatcgaag Run BLAST on NCBI protein sequence of achaete-scute like >TCONS_00000914-protein ID=TCONS_00000914-protein|Name=achaete-scute like|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MYSMASTFQYSENSAFSPVPFEVYDYPPVVSSSSVDPQALLADYELRHNQ
AMVDHWVNVHQQSPPYDTPSVPYGFFTYPYLQECLSSEPGFIRKRNERER
MRVRNVNEGYARLRDHLPLEPTEKRLSKVETLRGAIRYIKLLQSVLGEPK
QAMTPSATTTQRRTSDRSDGEFDGRNYER Run BLAST on NCBI transcript from alignment at sc0000005:536338..537812 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000914 ID=TCONS_00000914|Name=TCONS_00000914|organism=Clytia hemisphaerica|type=transcript|length=1475bp|location=Sequence derived from alignment at sc0000005:536338..537812 (Clytia hemisphaerica)
cttcgatttttctttttttgatcatttttttataattgatCGTTTTGTTA
ACTTTAATCTTGAAAattacaatttcattttcttcctcaaatttttgtta
aaatttgctTGCAGAGCTGTGTAAACTAAAGCCCAGTCCTTTTTCGTCCT
TGGAAATTTCCTCATCCGAGATTTTAACATCAGAATAggaagagaaaaaa
ataaaatgtacatAAAACGCAACAAAGAAGTCTTATTCAAACAATAGACT
AAACAGAAATTTAAATGATTATTCGGGCCCAGGTCCTTTATTTCGAAAGC
GAAAGAAAAATCGCATAAATTGCAAGTCGTATTACTTTGCAATacacata
aattttttttgagattcgAGTCAAGTCGATCATTGAAAATcatacaaaaa
aattcaagtcaAAGTTTAACACATGTACAGCATGGCATCTACGTTCCAGT
ATtctgaaaatagtgctttttcgCCGGTACCTTTCGAAGTTTACGACTAT
CCACCGGTTGTGAGCAGTAGCAGTGTCGACCCTCAAGCATTATTAGCGGA
TTACGAGTTACGTCATAACCAAGCTATGGTTGACCATTGGGTTAATGTGC
ACCAACAATCTCCGCCGTATGATACGCCATCAGTGCCTTACGGATTCTTT
ACGTATCCCTACTTACAAGAATGCCTCAGCAGCGAACCAGGTTTCATACG
TAAGCGTAATGAACGCGAACGCATGAGAGTACGGAACGTAAACGAAGGAT
ACGCGAGGTTACGCGACCATTTACCGTTGGAGCCGACTGAGAAACGATTG
TCGAAAGTTGAAACTTTACGAGGGGCCATTCGTTATATTAAACTTCTACA
ATCCGTGCTAGGTGAGCCGAAACAAGCGATGACACCATCGGCGACGACCA
CGCAAAGACGTACTTCTGACCGGAGTGACGGAGAATTTGATGGACGGAAT
TatgaaagataaaaaacagcggAAAATAGACTTTAACACCGAGGGATTAT
CAAACCGAGGGATTTGTTTTTTGCTATTTGTGTTTTATAACGCAAAAAGC
ACTCTATTTTGTCTCCTAGAAATTCTGCacattcttttttagaaaaaacc
tTAGTTTTGAGGATACTGGGTAAGTGTCAACGTGAATTTTGAGTAAATTC
ATTTTAGCTCTTCTTTACCATATCTgcttgaaaattattttgaagatttt
agaaatttgatttccCCAGGTGAATTAAATTATTATGTcatgtaaaataa
aataattctattaaaagtttgttaaatgtatataaatatgatatttttgt
ggaaaaaaataataatagaattttagtatatataatttttgatacaAAAA
GAGAGATACAATATTTGATAATTAAAGTTTGTGTTTTATCTTTTCATATT
GAAgaattcatatttcgttttataCGTTTGTCTTCGACCAACCCAAGTGG
GAGggaaattttcagaaatgttTGT Coding sequence (CDS) from alignment at sc0000005:536338..537812 >TCONS_00000914 ID=TCONS_00000914|Name=TCONS_00000914|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0000005:536338..537812 (Clytia hemisphaerica)
ATGTACAGCATGGCATCTACGTTCCAGTATtctgaaaatagtgctttttc
gCCGGTACCTTTCGAAGTTTACGACTATCCACCGGTTGTGAGCAGTAGCA
GTGTCGACCCTCAAGCATTATTAGCGGATTACGAGTTACGTCATAACCAA
GCTATGGTTGACCATTGGGTTAATGTGCACCAACAATCTCCGCCGTATGA
TACGCCATCAGTGCCTTACGGATTCTTTACGTATCCCTACTTACAAGAAT
GCCTCAGCAGCGAACCAGGTTTCATACGTAAGCGTAATGAACGCGAACGC
ATGAGAGTACGGAACGTAAACGAAGGATACGCGAGGTTACGCGACCATTT
ACCGTTGGAGCCGACTGAGAAACGATTGTCGAAAGTTGAAACTTTACGAG
GGGCCATTCGTTATATTAAACTTCTACAATCCGTGCTAGGTGAGCCGAAA
CAAGCGATGACACCATCGGCGACGACCACGCAAAGACGTACTTCTGACCG
GAGTGACGGAGAATTTGATGGACGGAATTatgaaagataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000914-exon-sc0000005-1491911889:536338..537812 | TCONS_00000914-exon-sc0000005-1491911889:536338..537812 | Clytia hemisphaerica | exon |
| TCONS_00000914-exon-sc0000005-1510915933:536338..537812 | TCONS_00000914-exon-sc0000005-1510915933:536338..537812 | Clytia hemisphaerica | exon |
| TCONS_00000914-exon-sc0000005-1575043694:536338..537812 | TCONS_00000914-exon-sc0000005-1575043694:536338..537812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:536338..537812 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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