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TCONS_00000914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000914
Unique NameTCONS_00000914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000914 ID=TCONS_00000914|Name=TCONS_00000914|organism=Clytia hemisphaerica|type=transcript|length=1475bp
ACAaacatttctgaaaatttccCTCCCACTTGGGTTGGTCGAAGACAAAC
GtataaaacgaaatatgaattcTTCAATATGAAAAGATAAAACACAAACT
TTAATTATCAAATATTGTATCTCTCTTTTtgtatcaaaaattatatatac
taaaattctattattatttttttccacaaaaatatcatatttatatacat
ttaacaaacttttaatagaattattttattttacatgACATAATAATTTA
ATTCACCTGGggaaatcaaatttctaaaatcttcaaaataattttcaagc
AGATATGGTAAAGAAGAGCTAAAATGAATTTACTCAAAATTCACGTTGAC
ACTTACCCAGTATCCTCAAAACTAaggttttttctaaaaaagaatgtGCA
GAATTTCTAGGAGACAAAATAGAGTGCTTTTTGCGTTATAAAACACAAAT
AGCAAAAAACAAATCCCTCGGTTTGATAATCCCTCGGTGTTAAAGTCTAT
TTTccgctgttttttatctttcatAATTCCGTCCATCAAATTCTCCGTCA
CTCCGGTCAGAAGTACGTCTTTGCGTGGTCGTCGCCGATGGTGTCATCGC
TTGTTTCGGCTCACCTAGCACGGATTGTAGAAGTTTAATATAACGAATGG
CCCCTCGTAAAGTTTCAACTTTCGACAATCGTTTCTCAGTCGGCTCCAAC
GGTAAATGGTCGCGTAACCTCGCGTATCCTTCGTTTACGTTCCGTACTCT
CATGCGTTCGCGTTCATTACGCTTACGTATGAAACCTGGTTCGCTGCTGA
GGCATTCTTGTAAGTAGGGATACGTAAAGAATCCGTAAGGCACTGATGGC
GTATCATACGGCGGAGATTGTTGGTGCACATTAACCCAATGGTCAACCAT
AGCTTGGTTATGACGTAACTCGTAATCCGCTAATAATGCTTGAGGGTCGA
CACTGCTACTGCTCACAACCGGTGGATAGTCGTAAACTTCGAAAGGTACC
GGcgaaaaagcactattttcagaATACTGGAACGTAGATGCCATGCTGTA
CATGTGTTAAACTTtgacttgaatttttttgtatgATTTTCAATGATCGA
CTTGACTcgaatctcaaaaaaaatttatgtgtATTGCAAAGTAATACGAC
TTGCAATTTATGCGATTTTTCTTTCGCTTTCGAAATAAAGGACCTGGGCC
CGAATAATCATTTAAATTTCTGTTTAGTCTATTGTTTGAATAAGACTTCT
TTGTTGCGTTTTatgtacattttatttttttctcttccTATTCTGATGTT
AAAATCTCGGATGAGGAAATTTCCAAGGACGAAAAAGGACTGGGCTTTAG
TTTACACAGCTCTGCAagcaaattttaacaaaaatttgaggaagaaaatg
aaattgtaatTTTCAAGATTAAAGTTAACAAAACGatcaattataaaaaa
atgatcaaaaaaagaaaaatcgaag
Run BLAST on NCBI

protein sequence of achaete-scute like

>TCONS_00000914-protein ID=TCONS_00000914-protein|Name=achaete-scute like|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MYSMASTFQYSENSAFSPVPFEVYDYPPVVSSSSVDPQALLADYELRHNQ
AMVDHWVNVHQQSPPYDTPSVPYGFFTYPYLQECLSSEPGFIRKRNERER
MRVRNVNEGYARLRDHLPLEPTEKRLSKVETLRGAIRYIKLLQSVLGEPK
QAMTPSATTTQRRTSDRSDGEFDGRNYER
Run BLAST on NCBI

transcript from alignment at sc0000005:536338..537812

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000914 ID=TCONS_00000914|Name=TCONS_00000914|organism=Clytia hemisphaerica|type=transcript|length=1475bp|location=Sequence derived from alignment at sc0000005:536338..537812 (Clytia hemisphaerica)
cttcgatttttctttttttgatcatttttttataattgatCGTTTTGTTA ACTTTAATCTTGAAAattacaatttcattttcttcctcaaatttttgtta aaatttgctTGCAGAGCTGTGTAAACTAAAGCCCAGTCCTTTTTCGTCCT TGGAAATTTCCTCATCCGAGATTTTAACATCAGAATAggaagagaaaaaa ataaaatgtacatAAAACGCAACAAAGAAGTCTTATTCAAACAATAGACT AAACAGAAATTTAAATGATTATTCGGGCCCAGGTCCTTTATTTCGAAAGC GAAAGAAAAATCGCATAAATTGCAAGTCGTATTACTTTGCAATacacata aattttttttgagattcgAGTCAAGTCGATCATTGAAAATcatacaaaaa aattcaagtcaAAGTTTAACACATGTACAGCATGGCATCTACGTTCCAGT ATtctgaaaatagtgctttttcgCCGGTACCTTTCGAAGTTTACGACTAT CCACCGGTTGTGAGCAGTAGCAGTGTCGACCCTCAAGCATTATTAGCGGA TTACGAGTTACGTCATAACCAAGCTATGGTTGACCATTGGGTTAATGTGC ACCAACAATCTCCGCCGTATGATACGCCATCAGTGCCTTACGGATTCTTT ACGTATCCCTACTTACAAGAATGCCTCAGCAGCGAACCAGGTTTCATACG TAAGCGTAATGAACGCGAACGCATGAGAGTACGGAACGTAAACGAAGGAT ACGCGAGGTTACGCGACCATTTACCGTTGGAGCCGACTGAGAAACGATTG TCGAAAGTTGAAACTTTACGAGGGGCCATTCGTTATATTAAACTTCTACA ATCCGTGCTAGGTGAGCCGAAACAAGCGATGACACCATCGGCGACGACCA CGCAAAGACGTACTTCTGACCGGAGTGACGGAGAATTTGATGGACGGAAT TatgaaagataaaaaacagcggAAAATAGACTTTAACACCGAGGGATTAT CAAACCGAGGGATTTGTTTTTTGCTATTTGTGTTTTATAACGCAAAAAGC ACTCTATTTTGTCTCCTAGAAATTCTGCacattcttttttagaaaaaacc tTAGTTTTGAGGATACTGGGTAAGTGTCAACGTGAATTTTGAGTAAATTC ATTTTAGCTCTTCTTTACCATATCTgcttgaaaattattttgaagatttt agaaatttgatttccCCAGGTGAATTAAATTATTATGTcatgtaaaataa aataattctattaaaagtttgttaaatgtatataaatatgatatttttgt ggaaaaaaataataatagaattttagtatatataatttttgatacaAAAA GAGAGATACAATATTTGATAATTAAAGTTTGTGTTTTATCTTTTCATATT GAAgaattcatatttcgttttataCGTTTGTCTTCGACCAACCCAAGTGG GAGggaaattttcagaaatgttTGT

Coding sequence (CDS) from alignment at sc0000005:536338..537812

>TCONS_00000914 ID=TCONS_00000914|Name=TCONS_00000914|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0000005:536338..537812 (Clytia hemisphaerica)
ATGTACAGCATGGCATCTACGTTCCAGTATtctgaaaatagtgctttttc
gCCGGTACCTTTCGAAGTTTACGACTATCCACCGGTTGTGAGCAGTAGCA
GTGTCGACCCTCAAGCATTATTAGCGGATTACGAGTTACGTCATAACCAA
GCTATGGTTGACCATTGGGTTAATGTGCACCAACAATCTCCGCCGTATGA
TACGCCATCAGTGCCTTACGGATTCTTTACGTATCCCTACTTACAAGAAT
GCCTCAGCAGCGAACCAGGTTTCATACGTAAGCGTAATGAACGCGAACGC
ATGAGAGTACGGAACGTAAACGAAGGATACGCGAGGTTACGCGACCATTT
ACCGTTGGAGCCGACTGAGAAACGATTGTCGAAAGTTGAAACTTTACGAG
GGGCCATTCGTTATATTAAACTTCTACAATCCGTGCTAGGTGAGCCGAAA
CAAGCGATGACACCATCGGCGACGACCACGCAAAGACGTACTTCTGACCG
GAGTGACGGAGAATTTGATGGACGGAATTatgaaagataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000539XLOC_000539Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
achaete-scute likeTCONS_00000914-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000914-exon-sc0000005-1491911889:536338..537812TCONS_00000914-exon-sc0000005-1491911889:536338..537812Clytia hemisphaericaexon
TCONS_00000914-exon-sc0000005-1510915933:536338..537812TCONS_00000914-exon-sc0000005-1510915933:536338..537812Clytia hemisphaericaexon
TCONS_00000914-exon-sc0000005-1575043694:536338..537812TCONS_00000914-exon-sc0000005-1575043694:536338..537812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:536338..537812 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09292 1.58498 0.444215 0.37251 2.34306 1.73206 1.80143 0.978157 0.661216 0.936026 1.44797 0.597232 6.67224 5.24528 6.63558 5.08886 7.65752 7.99964 19.8994 20.1999 9.75409 9.03964 9.41444 7.74116 8.93601 12.1373 1.1912 1.31229 6.50071 8.99994
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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