TCONS_00000913 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000913
Unique NameTCONS_00000913
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000913 ID=TCONS_00000913|Name=TCONS_00000913|organism=Clytia hemisphaerica|type=transcript|length=1373bp
ATGAATCgcaatttacaaatttgataaaataaagAATGTACATAAATGCG
GCTTCAAATAcactttgttttctttcttatGTTCCTTAGCTGGAAGTGTA
ACTGGCGCAATCGACTGTAGTTCTAGAATGCcgaaaaaaatgttattttg
tttCATAGAATGTCTCATAGTAGTTAATTTGCTATCTgcagcgaaaataa
aaaatgctgatAGTTGTACCACTTATCCTTGTGTGATATTCGAGGAGAAT
TTCGATACATTGGATCATAAGACATGGACCCATTGGATATCTGCCGCAGC
TACTGGTAACAAAGAATTCCAGTATTATGCTAACAATCGATCCAATAGTT
ATGTCAAAGAGGGACGTTTGAATCTGAAAGCCACTTTAACTAATAATACA
TTTGATGATGAATTTCTAACTGGCGGCGCTTTGGATTTATGGCCGGGTAA
CAAATGCACCTCAAATCGTGGAAACAAAGGATGTTATTATAAAGGGAGTA
AAGAAATCATTGTAAAACCCATCCAATCTGCTGCAATCAGTACCGAGGGT
GTGTTTTCTTTTAAATATGGTGAATTAGAAGTGTCAGCAAAAATGCCGAA
AGGTGATTGGCTATGGCCTGCTGTCTGGTTGATGCCAGAGCTTGAGGAAT
ATGGGAACTGGCCAGCTTCTGGTGAAATTGATCTGATCGAATCCAGAGGA
AACACTCATCTGACTGATGATGACGCAAAAACCGACGTTGGCAACAAACG
AATCATGCAATCGTTACACTGGGGTCCTTATTTCCCCTTAAATGGACAAC
CGTATACCCTTGCCAAAACAAACAAGAAAACAGGATCATTTGCAGATGCC
TTTCATAAATACAGGATGACTTGGACACCTGATAGTATTATATTCTTTAT
CGATTCACATTGTACTTTAAATGTATCGAGATCAGATACTAGTTTCTGGG
AATTGGCAAAGTTTCCAAGCTATTTAGATAACCCATGGCAAGGTGGTACA
AAATTAGCACCTTTCGATAAGaactttcatattattatcaatttagCTGT
TGGTGGGACTAATAACTATTTTCACCCTACCTATAAGCCAACACCACCTT
GGAAATCAAATGACGAGAAAGCTCAGACTGAATTCTGGGATGCCAGATCA
CAATGGTTACCCACGTGGGATGACCCAGTCTTTCAAATAGATTATGTTAA
AGTAACAAAGACGGTAAAAAACCCATAGTTTTTGAACATTGTAAAgtctt
aagagccattttctgtaagaaTCAGACAGGTCGAGGAAGTGATATCCGca
gattttgccaatttttggatattttgctcaaatacatgaaaataacatcc
tgtgaaaatttttttgaaaaatc
Run BLAST on NCBI

protein sequence of TCONS_00000913-protein

>TCONS_00000913-protein ID=TCONS_00000913-protein|Name=TCONS_00000913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
MPKKMLFCFIECLIVVNLLSAAKIKNADSCTTYPCVIFEENFDTLDHKTW
THWISAAATGNKEFQYYANNRSNSYVKEGRLNLKATLTNNTFDDEFLTGG
ALDLWPGNKCTSNRGNKGCYYKGSKEIIVKPIQSAAISTEGVFSFKYGEL
EVSAKMPKGDWLWPAVWLMPELEEYGNWPASGEIDLIESRGNTHLTDDDA
KTDVGNKRIMQSLHWGPYFPLNGQPYTLAKTNKKTGSFADAFHKYRMTWT
PDSIIFFIDSHCTLNVSRSDTSFWELAKFPSYLDNPWQGGTKLAPFDKNF
HIIINLAVGGTNNYFHPTYKPTPPWKSNDEKAQTEFWDARSQWLPTWDDP
VFQIDYVKVTKTVKNP
Run BLAST on NCBI

transcript from alignment at sc0000005:523279..524651

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000913 ID=TCONS_00000913|Name=TCONS_00000913|organism=Clytia hemisphaerica|type=transcript|length=1373bp|location=Sequence derived from alignment at sc0000005:523279..524651 (Clytia hemisphaerica)
gatttttcaaaaaaattttcacaggatgttattttcatgtatttgagcaa aatatccaaaaattggcaaaatctgCGGATATCACTTCCTCGACCTGTCT GAttcttacagaaaatggctcttaagacTTTACAATGTTCAAAAACTATG GGTTTTTTACCGTCTTTGTTACTTTAACATAATCTATTTGAAAGACTGGG TCATCCCACGTGGGTAACCATTGTGATCTGGCATCCCAGAATTCAGTCTG AGCTTTCTCGTCATTTGATTTCCAAGGTGGTGTTGGCTTATAGGTAGGGT GAAAATAGTTATTAGTCCCACCAACAGctaaattgataataatatgaaag ttCTTATCGAAAGGTGCTAATTTTGTACCACCTTGCCATGGGTTATCTAA ATAGCTTGGAAACTTTGCCAATTCCCAGAAACTAGTATCTGATCTCGATA CATTTAAAGTACAATGTGAATCGATAAAGAATATAATACTATCAGGTGTC CAAGTCATCCTGTATTTATGAAAGGCATCTGCAAATGATCCTGTTTTCTT GTTTGTTTTGGCAAGGGTATACGGTTGTCCATTTAAGGGGAAATAAGGAC CCCAGTGTAACGATTGCATGATTCGTTTGTTGCCAACGTCGGTTTTTGCG TCATCATCAGTCAGATGAGTGTTTCCTCTGGATTCGATCAGATCAATTTC ACCAGAAGCTGGCCAGTTCCCATATTCCTCAAGCTCTGGCATCAACCAGA CAGCAGGCCATAGCCAATCACCTTTCGGCATTTTTGCTGACACTTCTAAT TCACCATATTTAAAAGAAAACACACCCTCGGTACTGATTGCAGCAGATTG GATGGGTTTTACAATGATTTCTTTACTCCCTTTATAATAACATCCTTTGT TTCCACGATTTGAGGTGCATTTGTTACCCGGCCATAAATCCAAAGCGCCG CCAGTTAGAAATTCATCATCAAATGTATTATTAGTTAAAGTGGCTTTCAG ATTCAAACGTCCCTCTTTGACATAACTATTGGATCGATTGTTAGCATAAT ACTGGAATTCTTTGTTACCAGTAGCTGCGGCAGATATCCAATGGGTCCAT GTCTTATGATCCAATGTATCGAAATTCTCCTCGAATATCACACAAGGATA AGTGGTACAACTatcagcattttttattttcgctgcAGATAGCAAATTAA CTACTATGAGACATTCTATGaaacaaaataacatttttttcgGCATTCTA GAACTACAGTCGATTGCGCCAGTTACACTTCCAGCTAAGGAACataagaa agaaaacaaagtgTATTTGAAGCCGCATTTATGTACATTctttattttat caaatttgtaaattgcGATTCAT

Coding sequence (CDS) from alignment at sc0000005:523279..524651

>TCONS_00000913 ID=TCONS_00000913|Name=TCONS_00000913|organism=Clytia hemisphaerica|type=CDS|length=1101bp|location=Sequence derived from alignment at sc0000005:523279..524651 (Clytia hemisphaerica)
CTATGGGTTTTTTACCGTCTTTGTTACTTTAACATAATCTATTTGAAAGA
CTGGGTCATCCCACGTGGGTAACCATTGTGATCTGGCATCCCAGAATTCA
GTCTGAGCTTTCTCGTCATTTGATTTCCAAGGTGGTGTTGGCTTATAGGT
AGGGTGAAAATAGTTATTAGTCCCACCAACAGctaaattgataataatat
gaaagttCTTATCGAAAGGTGCTAATTTTGTACCACCTTGCCATGGGTTA
TCTAAATAGCTTGGAAACTTTGCCAATTCCCAGAAACTAGTATCTGATCT
CGATACATTTAAAGTACAATGTGAATCGATAAAGAATATAATACTATCAG
GTGTCCAAGTCATCCTGTATTTATGAAAGGCATCTGCAAATGATCCTGTT
TTCTTGTTTGTTTTGGCAAGGGTATACGGTTGTCCATTTAAGGGGAAATA
AGGACCCCAGTGTAACGATTGCATGATTCGTTTGTTGCCAACGTCGGTTT
TTGCGTCATCATCAGTCAGATGAGTGTTTCCTCTGGATTCGATCAGATCA
ATTTCACCAGAAGCTGGCCAGTTCCCATATTCCTCAAGCTCTGGCATCAA
CCAGACAGCAGGCCATAGCCAATCACCTTTCGGCATTTTTGCTGACACTT
CTAATTCACCATATTTAAAAGAAAACACACCCTCGGTACTGATTGCAGCA
GATTGGATGGGTTTTACAATGATTTCTTTACTCCCTTTATAATAACATCC
TTTGTTTCCACGATTTGAGGTGCATTTGTTACCCGGCCATAAATCCAAAG
CGCCGCCAGTTAGAAATTCATCATCAAATGTATTATTAGTTAAAGTGGCT
TTCAGATTCAAACGTCCCTCTTTGACATAACTATTGGATCGATTGTTAGC
ATAATACTGGAATTCTTTGTTACCAGTAGCTGCGGCAGATATCCAATGGG
TCCATGTCTTATGATCCAATGTATCGAAATTCTCCTCGAATATCACACAA
GGATAAGTGGTACAACTatcagcattttttattttcgctgcAGATAGCAA
ATTAACTACTATGAGACATTCTATGaaacaaaataacatttttttcgGCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000538XLOC_000538Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000913-proteinTCONS_00000913-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000913-exon-sc0000005-1491911889:523279..524651TCONS_00000913-exon-sc0000005-1491911889:523279..524651Clytia hemisphaericaexon
TCONS_00000913-exon-sc0000005-1510915933:523279..524651TCONS_00000913-exon-sc0000005-1510915933:523279..524651Clytia hemisphaericaexon
TCONS_00000913-exon-sc0000005-1575043694:523279..524651TCONS_00000913-exon-sc0000005-1575043694:523279..524651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:523279..524651 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.121917 0.326942 0.111178 0.101288 1.06867 1.07184 3.25242 3.52178 1.92632 1.17712 0.679348 2.17199 9.72995 8.25006 5.71133 10.9953 6.06336 6.80104 0.1296 0.101713 7.18989 6.939 4.75277 5.62359 5.32671 7.27217 1.37917 0.401423 0.067659 0.172334
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000757GH16
IPR013320ConA-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top