TCONS_00000906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000906
Unique NameTCONS_00000906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000906 ID=TCONS_00000906|Name=TCONS_00000906|organism=Clytia hemisphaerica|type=transcript|length=355bp
GCTCCGGGTAGTAGCCAAAGGATGGACCAAAAGAAACGACTTTTTCCCAC
CAATCTCGGACGCGATCGAGTTTACCTGCACCACCCAAATCGTCAGCAAA
GGCTACCTGCTGCACCGACTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGCGTGGTTCCTTCAGTTGATGAGATTTCTAGTCCTCC
CTGTACAAATAAGCGCGAAGGAACTTTGTAACAGTTCGAAACATATGTTG
CCAAGACGGGACAAagatacctaaaatcctttaaattgagaaataatgat
aaaaaattaacgccgcttttaggttaaaattgcaaaGTCTTGGCTCTTTT
TAGGC
Run BLAST on NCBI

transcript from alignment at sc0000005:238483..238837

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000906 ID=TCONS_00000906|Name=TCONS_00000906|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0000005:238483..238837 (Clytia hemisphaerica)
GCCTAAAAAGAGCCAAGACtttgcaattttaacctaaaagcggcgttaat
tttttatcattatttctcaatttaaaggattttaggtatctTTGTCCCGT
CTTGGCAACATATGTTTCGAACTGTTACAAAGTTCCTTCGCGCTTATTTG
TACAGGGAGGACTAGAAATCTCATCAACTGAAGGAACCACGCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGTCGGTGCAGCAGG
TAGCCTTTGCTGACGATTTGGGTGGTGCAGGTAAACTCGATCGCGTCCGA
GATTGGTGGGAAAAAGTCGTTTCTTTTGGTCCATCCTTTGGCTACTACCC
GGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000531XLOC_000531Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000906-exon-sc0000005-1491911889:238483..238837TCONS_00000906-exon-sc0000005-1491911889:238483..238837Clytia hemisphaericaexon
TCONS_00000906-exon-sc0000005-1510915933:238483..238837TCONS_00000906-exon-sc0000005-1510915933:238483..238837Clytia hemisphaericaexon
TCONS_00000906-exon-sc0000005-1575043694:238483..238837TCONS_00000906-exon-sc0000005-1575043694:238483..238837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:238483..238837 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.30848	1.99986	0.717484	3.2724	14.2815	9.86502	12.4174	16.4093	4.37167	6.22991	2.83942	3.91673	3.25262	3.68511	2.74272	5.93471	6.37697	5.01796	2.38709	3.11199	2.16014	4.82984	2.11609	2.63646	9.85964	12.7524	2.6555	1.77385	0	0.680287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top