TCONS_00000882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000882
Unique NameTCONS_00000882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000882 ID=TCONS_00000882|Name=TCONS_00000882|organism=Clytia hemisphaerica|type=transcript|length=3696bp
TCCTTATCTTCATAGTTTCAGAAAGGTGTATATCTTTAACAATTATGATT
TATAGAACAgataagaaatttttttaatagaaagTTAAAAGAGGAACtga
aaaggaaatcaaaagGGGGACATTACCCTCTGAAAAGCCCTGGACGCGAG
CAATTAAGCCACCAAAGATGGAAAAAATTGATATCTTTCATCCTTGAAAA
GACTTTTCGAAATCTTGTGATAAAGAAGTATTCACAGTCGTTGGTCAATT
TTTACTGGCGCATTCAAACTTCAAGATTTCCTAAATCGAAGTGAAGTCTA
GTAATATACAAAATCGCACGTGCTTATCATGCTTGTTTTTTATATGATGG
TATTGTGTGCGGCTATGTCAACGAATCGTCATTTTTTCGCTCATTCGTAT
GATAATAACCCATATCCTGGCTTCAATCTGGGTATGTTTGGCAATCGTGG
ATATTATTTTAATCTAGccTATGAAAGTTTGGACGAAGGTGAACAGAGGC
TTTTGAAATATCTGAAGAATTTTAGCGTGAACTCGAGGCCAGTCAATATC
TCATCAACAGCTGTATACGTTAATGTTACCATGGAAATTGTTCGACTCGA
TGCCGTGAGTGAAAAGGGACAGTCTGTTCGGATGAAATTACATATTAATT
ATctttGGAGGAACCCATATTTAGTATGGAATCCGCTTAACTATAAAGGT
GTTTCCGAAGTCATTTTACCCGAAGGTGAAATCTGGATACCGCCCATACG
CCTCTTCAATGAAGCGAGCAAAACACAAGGTGAATACAATGAGGACAATC
ACGCGCGGACCGTGCTTCTAACGAATGATGGCAACTGTTCACTAACCTAT
GCCCAGTTCTTCAAATCCACATGCGAAATTGATGTCAGTGATTTTCCATT
TGACCAGCAATATTGCGATATGACGTTTGGTAGTTGGAGTATGGATGAAC
GGTTGCTACAACTGAGAGCTGTCAAGGAAGAAGCTATATCTGAGCAATTG
TACAAGGAAAATGGTGAATGGCATTTAACTGAAGCCACATTGAAGACCCA
TGATGTCAGATATCCGATTCACCGTCACAAACACAGCACCATCAAACTCT
CCATACTCATAAAGCGAAAGTACATCTTTTTCATCATGAATTTGGTGGTA
CCATGTGCTCTCATTGCATGCATGATTTTCTTGGTGTTTGTACTACCAGC
CAAATCAGGAGAAAGAATCTCTCTTGGTATTACTGTCATGTTATCTATGG
CTATCTTTCAAGAATTGTCGTCAGAGAAATTGCCAAGTAGTTCTGATAAC
TATCCGTTACTTGgtgtTTATTACACGACTTCAATGTTTGAAATTGGTAT
TGCCCTGGTCATGAACTGCTTCATTCTTAATGTTTACTATCGCAACTATG
AAATGCAGCCGTGGATGCGTCGATTGTTATTCGATAAACTCGCTCGACTC
GTTCGAATCGATATCCCACATACTCGAACGCAGCATTACATTGATCGAAT
GTCGACTGGTCAGTTCCGAGAATTGAATCCATTGGCTGAAACCACCCTCA
ATAATACGGCGCACAATGCTCACAATATTGACGGTGAATCGGCACTTGGT
AACGGGAACGGAGAAATGTcatattttccaaaatcgacGCTCCATCGGGA
AGACACACAGACTATTCAACGGAAAACCAAGAAGTTTTCTGTCAACCAAA
ACGGCAGCAGTAGCGATTTGACGTACACCAAATCGAATTTGTCGGCAAAA
ATTTCACTCTCTTTGTCATCTGATCCAAGTACGCGTATCGAAGAGCGAAA
ACTCTTAGGTGAGGACTGGAAAACAGCGGCTAGAATTCTAGATCGCTGTA
TGTTAGCTATAGCGATTAGCGTTGGAGTTATCTCAGCACTTACCATTTTT
ATGCAAGCGGCAAGGTTTCGTGAGATGTTTATTCCTTGAGAATGCTCTCA
CTGCTTTGCTTACACTCAACACAAGTAAGTGCTTGCCATCTGTTGTTGCT
ATGGTAAATTTTATGATGTTCAAGGAGGAGTTATGGAGAAAGAAAGATGG
TAGCACCATTACGTATTGCTAAGGTTGGTAACCCTTGGTTACAGGAGACC
TCGTTTCATGGGTTGTATAAATGACACAGATACAATATCTATAAAAGCGA
AAATTTGTTTCTACCGCAAAATAAAATGACTGAGTTGAAATGGTTTAGAT
AATGAGCTTATTAAACAAACAAAGCTAACTTATTATTAATAATGCTTAGC
TGATAGAAAGAGGAAAGTTTGTATTTACTAAAATCACTTTCAAATCAAGG
CCGCTTTTTACATTACGTGCTTGATGCAAAAACATAAAGAATGGCTTTGG
CGAAACAATCTTGGCCCAAACATACAATCAAAGTAAAAGCGTCTCTTTGC
Naataattaacataatatatgcatggatcgtgcatcgtgcatcgtgaatc
gttggatcgcgcatcgtaaatagacgatatcgcgtttagataaatgcaat
gcattctggtttctcggggactctcaaaggaattataatgtcGATTATAT
AATAATCtggaatagattataattcccttgagggtccccgagaaaccaga
atgcattgcatttatctaaacgcgatatcgtctattactcTGGTAcatct
ttttgtatttttcgtGTTGAGGACGGCAGCCTTGAGAAATGAGTACCATT
TAGAAAAGTCAAGTAAAGGAATTGTCACTTGAAGTTTTCAAATTCGCCGT
AATTAGATTATACATTATATCTGGAAAAAGAACTTGATACAGTTTTTGGG
TCCCGAGTTAAATTCGTCATAAGAAAAACTCTACCGTGATAAAAAACTTA
TTTGGAACAATAATTTCTTCATAGTACAGTTAAACATTTTGTAtgacttc
aattttcaattcttttactGGACATAGATATGCATTGCAAAAACAAgtca
ggctcggatacagagggaggctataaccaatggaggagagtgcactttat
catcgtattaccttatatggaaactaattactctccacgaataagatagc
ctacctcctgtatccgacacTGNAtgacttcaattttcaattcCTTTACT
GGACATAGATATGCATTGCAAAAACAAGTCTTTTTTCAGTTGATTTTAAA
TTTATACGATTTGATACATAACATATTATTCTATATGATACGGTAGTCGT
ATTGGTCGGAAAGTTTTTGGAATTCCTcacaaaaatttgataaattaaaG
GTTATTTTTGCCTTTTCGTATCAGTAAGCAAATCAATGAAAACTGCAATT
GCAAACTGGCTGCAATTTGGACGTAGTTATCACACTCCCGACAGCTTAAA
TTTATAatataaataaacaaatttttaattaactGGAATTTGGATTTCTA
AGTTTTAGTACCAGATATGAAATCCAAATGCTCGACTAGATTGCAAATCT
GTAAGAATTCATGCGACAGATATATTACGACTTTAAATTCGTGACTTAAA
AAAGACATAATTTAAATTAGcactatttatttatttatttattgaacatt
tgtcaatattttgctttaatttattgtttttatagtAATAAGTGTCGATT
CTTCATAGTTTTGCAATCCTCAATATTTGTTTTCGACCCTCGTGAGTCCT
GGGACGATGACcaatttacatgtttttttataagcataaaaaattc
Run BLAST on NCBI

transcript from alignment at sc0000005:1369793..1379647-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000882 ID=TCONS_00000882|Name=TCONS_00000882|organism=Clytia hemisphaerica|type=transcript|length=9855bp|location=Sequence derived from alignment at sc0000005:1369793..1379647- (Clytia hemisphaerica)
TCCTTATCTTCATAGTTTCAGAAAGGTGTATATCTTTAACAATTATGATT
TATAGAACAGATAAGAAATTTTTTTAATAGAAAGTTAAAAGAGGAACTGA
AAAGGAAATCAAAAGGGGGACATTACCCTCTGAAAAGCCCTGGACGCGAG
CAATTAAGCCACCAAAGATGGAAAAAATTGATATCTTTCATCCTTGAAAA
GACTTTTCGAAATCTTGTGATAAAGAAGTATTCACAGTCGTTGGTCAATT
TTTACTGGCGCATTCAAACTTCAAGATTTCCTAAATCGAAGTGAAGTCTA
GTAATATACAAAATCGCACGTGCTTATCATGCTTGTTTTTTATATGATGG
TATTGTGTGCGGCTATGTCAACGAATCGTCATTTTTTCGCTCATTCGTAT
GATAATAACCCATATCCTGGCTTCAATCTGGGTATGTTTGGCAATCGTGG
ATATTATTTTAATCTAGGTCCGTTGTAGTCATTCATTGCTTCGTTCATTT
TTTAACCTCGTTGCCTCTCTCAAACTGTTTCATATATATACCAGCCAGTC
TGTTTACCATAAGTGTTAAATCATCTGGCTTTTTCATATGGAAACCATAT
CAGTATGATTTAAACTGAGTTTGTTTGTGGGTGGTTTCCACCTGGTAGCA
AGAAAAGTGCACTCTAATGAGAGCTGGAATATCCGATTCTTTGCTTACTT
TCGGCTAGTACGATTTTTTGAATCTGTCGGTAAATATTACCTTCAATCAA
ACTTAATTGAACAACTCGTACCAGTGTTCGGAAATTCCTTGCTAATACAC
CTTTTCGACCGTAGCCACCAATTGCCGCGTGGGCATTTTTTTTTTGTCCG
TTAATCACCCTAAAACCGTCCCAGTCTTTNTCCGATTCTTTGCTTACTTT
CGGCTAGTACGATTTTTTGAATCTGTCGGTAAATGTTACCTTCAATCAAA
CTTAAGTGAATAACTCGTACCAGTGTTCGGAAATTCCTTGCTAATACACC
TTTTCGACCGTAGCCACCAATTGCCGCGTGGGCATTTTTTTTTGTCCGCT
TTACCACCCTAAAACCGTTCCAGTCTTTTTTTTGCACCTATAGGCAATAG
AAAAAAGTCTAAAAAAGCATTAGACTAGCAAACTAGTCTGTTAATTAATC
ATATCAGAGGGGGGGACATAAAGGCGGCGGGCGTTTGCTAGAATAGGAGC
TGCGTAGGAGAGCGAGCAAAAGTTAGTGAGAGGCTGCTGATTAATAGGCA
CGTACCTGACCGCGCGACTACGGTCGAAAAGGTGTATCAAACTTATGTGT
CCTTTCCCATCCGTCATCTTTATAGATTTGATATTTTATAAAGATGATCA
TTTCTCCCTATATTGTTGTCACAAATCGAACAGTTTGGTGCATCCAGACT
TTCAAGCTCTTTCTCAGCCAAAACCATAAGATTTAACATTAAATTATATC
GTTGTCGATTTGATCATAGACTTCACAGCCGTGATTTATTCAAACCCCTG
TTATTTTCATTTTTTAGCCTATGAAAGTTTGGACGAAGGTGAACAGAGGC
TTTTGAAATATCTGAAGAATTTTAGCGTGAACTCGAGGCCAGTCAATATC
TCATCAACAGCTGTATACGTTAATGTTACCATGGAAATTGTTCGACTCGA
TGCCGTGGTAGGTTTTACTCATATAGCCCGGTTTTTTTATTAGTTATCGG
GTGTGTAAAATCCTGCTTTGGGCGAGGTTTTATCGATTTGGAAAGGAGCG
GAAAATGACATTCGGTCTCCACATGACGTTTTTTCGGTCAATGAAATTGC
AAGTAACTTGACTGTCGGATAAGCTTCATATTTTCTGCAAGGCTGACGTA
TAACCGGATAAGATTTACATATTTTCTCTAAAGTCTACTTATAGTGTAAA
AGCTTTTACCCCCAACTAAGAGGTCTTAATAAACATTCGGTTGTCTGGTG
ATTGTATATTGATGGTTGTCTATAGTTAGGGACTGTACACCCTGGTAGAG
GAGCAGATTATTTTCGTCTTTTTTAAATCACTTATTGGTTTCCTTACGAC
TTTATTAAAAGCAAAGACTATTCGATTCTTAGTTTCCATCTGCTTTGACT
ACCCTTACTAGTAATATAGATATTGGGTGTAACAATATGGTCGAATATAT
TCGTATACCGGCGCCGTCTCTAGTTTAAGAATCAGTTCTTTATCTCGTCT
AGATTTTTATTTCTAAAGATCCTCATCTTATTGTCCCCCATATGAACCCT
TCAAATTATTTCATTTTCTTTTCAAATATTCGTAGATTATTTTATCTTAG
GTTTTCTTCCTTTATTTTCTTATAGAGTGAAAAGGGACAGTCTGTTCGGA
TGAAATTACATATTAATTATGTAAGTAATGAAACATTTTGTGTCTAACTT
TTTTATCCCTAAACTAACCCTCCTTATCTGATCTCTAAGACTGAGAGTAC
ACTATCCAGTTTTATCATCTCTACCATTGTTGCCGGCACCATGAAGTCAT
ATAGGGCCAGATAGGCAAACTTTAAGCTTTCCCAGTAGAGTAAAAACAAA
AGATTGTGCCCTTTTTGTATCGGTTACCGGTAATCTTTTTCTTATTTTCA
GCTTTGGAGGAACCCATATTTAGTATGGAATCCGCTTAACTATAAAGGTG
TTTCCGAAGTCATTTTACCCGAAGGTGAAATCTGGATACCGCCCATACGC
CTCTTCAATGAGTAAGCACATTTTTCATCACCCTAAAACGCCCTGAAATA
TTAAAAATCGAAATTGAGAATGAACTTTATTTGGTAGTCCAATTCAGTTA
AATTGCGCCCCTGTTGCCAACTGTCTTTTTTTCCCCTCTTTGTAATTATT
TTCCCTGAAAATGTTCCTGGAAGCTCAACTTACATCATTTTAGGGGCCTC
GAATTCATCCAAGTTTTTTTTCTGTAGGATTTCCTACAAAAAACTAAAAG
TCCCAAGACATTTTGACGTTCAACAAACAGCCGCTTTCAACTTTATCTAC
CGTCTTTATTGTTCGAAATCTCTTGCACTGCGATCCTTTTGCCACCTTTC
CTCTTCTTTTCCTCTTTCTTCAAACTCGCCCTTTTTTACCCACAGTTTTA
ATTTATTTTAAAGAAAGAAATGTTGTAAATGCCTAATGGGGCATTATTCT
TTTTCGCCGTAATGAAACCAACTGCACCTAAGATAGTGATTCCACTGAAG
TACAGAAAACTAGTAAAGAATCTCAATTAGTATTATTGCATTAATTTTCA
AAAGATTAACTTTTGTGTTTTTGCGAATTTCGGCGAAATTGCCGACTCAG
GGAATTAAATCCACGCATTCTGTAACTCTTTTTTTTCGAGGGAAAATAAC
ACTCGAAATCTTCTTTACGGAAAATTGGGATCTTTTTTAGCTGATTTTTA
GTCCAGAAATTTTAGGCATTACTAACGGGCAAAATAATCTTTCTCGTTAA
AATCATCAAGACAATCCCTAAAAATGATGCTGAAAAATATTTCTCTTTGA
ATTTCCTGACTGACTTAGAGAAGTCTCTAAATACGGGAATATTGCTTTCT
TTTAAAAAGAAAAACTGTTTTTATAATGACTCTCTTGGTTAGGGGTTAGT
TCCAAGAATCTTTCTTAGCTTTTATCCAACAAGACTAGAAAAGAAAAAAT
AATATTTAAACAGCGGTTTTGATCTGAATATTCTTTCCCAAAAAATTTGT
TCTATATTTAGGGTACTATTAGGCAGGTGCCTCAAAAGAAATATGTAGAT
GTTAATTTTTTATTCTCGCCCCCTCTTTTTCATATCATTTCTTCCACATT
TACTTTTCACTTAAAAATATATTTGGAAAAAGTCATATCAGTACGAAAAG
ATTAATTTTATACATTTAGAATGCGTACACTTTACTTTCCGAAAAAAAAA
CCCATGGGGCCTAAAAATAGAACAAAAGATACAATGCTAGTAAAACACCC
AAAAGCCTGGAGCTATCCTATTATGTAGATTTTCACATCCTCGAATTAAA
AAACACTTTCAAAATATTATAAACCTTTTTTACCCTGGTGATTTTTAGAA
AACTAAAACTTTGTACCTTTCCTATCTTCCAAGCTTTTCAATTCTTTCAT
GCAGAGCGAGCAAAACACAAGGTGAATACAATGAGGACAATCACGCGCGG
ACCGTGCTTCTAACGAATGATGGCAACTGTTCACTAACCTATGCCCAGTT
CTTCAAATCCACATGCGAAATTGATGTCAGTGATTTTCCATTTGACCAGC
AATATTGCGATATGACGTTTGGTAGTTGGAGTATGGATGAACGGTTGCTA
CAACTGAGAGCTGTCAAGGAAGAAGCTATATCTGAGCAATTGTACAAGGA
AAATGGTGAATGGCATTTAACTGAAGCCACATTGAAGACCCATGATGTAC
GTTTTCCTTGATCATATTTTTAGTTTTAGTTGAATTTCGGTTTCTGGAAA
GAGTACCACTTCCAGACTAGAATCCAGTTGTATTCTTAGAATTAAGAGTA
GATGTACAATCAAATTGTAAGACAAAGTAGAATACAAGCTTCACCCCCTC
CCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGTCCCCCCCGTTTATTGAAATTTCAAAAA
TTTTCCAACCCCCCCGTTTATTCCAACCCCCCGTTTATTTGGCACCTAAG
AGTAAGTCCATGATTGTATAAACGTCATCGATCAAAGGTGTAACCTTTTG
TTTTGGTGCTTTATAAATTTTTACGATTAAATCTTAAACCTGCTAGCCTA
GAAGAGGACTAGTAAGTACTCTTAGAATGAAAATAAGAATTGTATTCTGA
GGGAATTCTTAGTTTCAATTACTATCAACCAGACAGATCTTCCTCGATTT
TAATAAATCATAGTAAAGATATTCTTTTTTTATGCTGACAGAATAGAGTT
AACAAAAGAATTTCTCAAAATTTGTCCTATCACGTGACGAAAGTAACTTC
TTTTGTTTAAAGATAAAGTAGTGTGTCTTTTGTTTTTAAATCAGAAAATT
CAATGGGATTGGGGAAGATAGCACGATATTTTGCAGTGAGGATTTGTTTA
TTTGATTATTTTCAGTGGGGACAAAAATTGGACGATGATTTTCCACCGGG
GACGATATTTTGGCAAAATTTTTCTTTTTCTGTGAGAAGGGGGTGTCTTC
AAATCAAGGTAGTTTGAACTGTAAGAAAAATTTTCCTTTTATAGGTCAGA
TATCCGATTCACCGTCACAAACACAGCACCATCAAACTCTCCATACTCAT
AAAGCGAAAGTACATCTTTTTCATCATGAATTTGGTGGTACCATGTGCTC
TCATTGCATGCATGATTTTCTTGGTGTTTGTACTACCAGCCAAATCAGGA
GAAAGAATCTCTCTTGGTATTACTGTCATGTTATCTATGGCTATCTTTCA
AGAATTGTCGTCAGAGAAATTGCCAAGTAGTTCTGATAACTATCCGTTAC
TTGGTATGTATTACTACAAAACTTTGAAATATCTTTCCAACTAGTTTTGA
TAGATTTTCAATTTTGTGCTCGCTGAAAAAACTGACTGCTAGTAGAATTT
CTAACAATTTTTTTAAAGGTTGGAAATTAGGAGGACAAAAATATAGCGTT
TTAAAAGCGTATGAGAACCACTTTTCACAGAAAAAGAACTTCTACCTAAA
TCTTCACTCTTAATTAAAGAGTATGTCAGACATACAAGAATCACACATGG
CAATAACCTTTCTGTTATCAAAATTCATTACATNTTCTGAGGGAATTCTT
AGTTTCAATTACTATCAACCAGACAGATCTTCCTCGATTTTAATAAATCA
TAGTAAAGATATTCTTTTTTTATGCTGACAGAATAGAGTTAACAAAAGAA
TTTCTCAAAATTTGTCCTATCACGTGACGAAAGTAACTTCTTTTGTTTAA
AGATAAAGTAGTGTGTCTTTTGTTTTTAAATCAGAAAATTCAATGGGATT
GGGGAAGATAGCACGATATTTTGCAGTGAGGATTTGTTTATTTGATTATT
TTCAGTGGGGACAAAAATTGGACGATGATTTTCCACCGGGGACGATATTT
TGGCAAAATTTTTCTTTTTCTGTGAGAAGGGGGTGTCTTCAAATCAAGGT
AGTTTGAACTGTAAGAAAAATTTTCCTTTTATAGGTCAGATATCCGATTC
ACCGTCACAAACACAGCACCATCAAACTCTCCATACTCATAAAGCGAAAG
TACATCTTTTTCATCATGAATTTGGTGGTACCATGTGCTCTCATTGCATG
CATGATTTTCTTGGTGTTTGTACTACCAGCCAAATCAGGAGAAAGAATCT
CTCTTGGTATTACTGTCATGTTATCTATGGCTATCTTTCAAGAATTGTCG
TCAGAGAAATTGCCAAGTAGTTCTGATAACTATCCGTTACTTGGTATGTA
TTACTACAAAACTTTGAAATATCTTTCCAACTAGTTTTGATAGATTTTCA
ATTTTGTGCTCGCTGAAAAAACTGACTGCTAGTAGAATTTCTAACAATTT
TTTTAAAGGTTGGAAATTAGGAGGACAAAAATATAGCGTTTTAAAAGCGT
ATGAGAACCACTTTTCACAGAAAAAGAACTTCTACCTAAATCTTCACTCT
TAATTAAAGAGTATGTCAGACATACAAGAATCACACATGGCAATAACCTT
TCTGTTATCAAAATTCATTACATTATGAAATTCCTGATCGAACTTGATCC
ACATATTTCTTTTTATTTTCAGGTGTTTATTACACGACTTCAATGTTTGA
AATTGGTATTGCCCTGGTCATGAACTGCTTCATTCTTAATGTTTACTATC
GCAACTATGAAATGCAGCCGTGGATGCGTCGATTGTTATTCGATAAACTC
GCTCGACTCGTTCGAATCGATATCCCACATACTCGAACGCAGCATTACAT
TGATCGAATGTCGACTGGTCAGTTCCGAGAATTGAATCCATTGGCTGAAA
CCACCCTCAATAATACGGCGCACAATGCTCACAATATTGACGGTGAATCG
GCACTTGGTAACGGGAACGGAGAAATGTCATATTTTCCAAAATCGACGCT
CCATCGGGAAGACACACAGACTATTCAACGGAAAACCAAGAAGTTTTCTG
TCAACCAAAACGGCAGCAGTAGCGATTTGACGTACACCAAATCGAATTTG
TCGGCAAAAATTTCACTCTCTTTGTCATCTGATCCAAGTACGCGTATCGA
AGAGCGAAAACTCTTAGGTGAGGACTGGAAAACAGCGGCTAGAATTCTAG
ATCGCTGTATGTTAGCTATAGCGATTAGCGTTGGAGTTATCTCAGCACTT
ACCATTTTTATGCAAGCGGCAAGGTTTCGTGAGATGTTTATTCCTTGAGA
ATGCTCTCACTGCTTTGCTTACACTCAACACAAGTAAGTGCTTGCCATCT
GTTGTTGCTATGGTAAATTTTATGATGTTCAAGGAGGAGTTATGGAGAAA
GAAAGATGGTAGCACCATTACGTATTGCTAAGGTTGGTAACCCTTGGTTA
CAGGAGACCTCGTTTCATGGGTTGTATAAATGACACAGATACAATATCTA
TAAAAGCGAAAATTTGTTTCTACCGCAAAATAAAATGACTGAGTTGAAAT
GGTTTAGATAATGAGCTTATTAAACAAACAAAGCTAACTTATTATTAATA
ATGCTTAGCTGATAGAAAGAGGAAAGTTTGTATTTACTAAAATCACTTTC
AAATCAAGGCCGCTTTTTACATTACGTGCTTGATGCAAAAACATAAAGAA
TGGCTTTGGCGAAACAATCTTGGCCCAAACATACAATCAAAGTAAAAGCG
TCTCTTTGCNAATAATTAACATAATATATGCATGGATCGTGCATCGTGCA
TCGTGAATCGTTGGATCGCGCATCGTAAATAGACGATATCGCGTTTAGAT
AAATGCAATGCATTCTGGTTTCTCGGGGACTCTCAAAGGAATTATAATGT
CGATTATATAATAATCTGGAATAGATTATAATTCCCTTGAGGGTCCCCGA
GAAACCAGAATGCATTGCATTTATCTAAACGCGATATCGTCTATTACTCT
GGTACATCTTTTTGTATTTTTCGTGTTGAGGACGGCAGCCTTGAGAAATG
AGTACCATTTAGAAAAGTCAAGTAAAGGAATTGTCACTTGAAGTTTTCAA
ATTCGCCGTAATTAGATTATACATTATATCTGGAAAAAGAACTTGATACA
GTTTTTGGGTCCCGAGTTAAATTCGTCATAAGAAAAACTCTACCGTGATA
AAAAACTTATTTGGAACAATAATTTCTTCATAGTACAGTTAAACATTTTG
TATGACTTCAATTTTCAATTCTTTTACTGGACATAGATATGCATTGCAAA
AACAAGTCAGGCTCGGATACAGAGGGAGGCTATAACCAATGGAGGAGAGT
GCACTTTATCATCGTATTACCTTATATGGAAACTAATTACTCTCCACGAA
TAAGATAGCCTACCTCCTGTATCCGACACTGNATGACTTCAATTTTCAAT
TCCTTTACTGGACATAGATATGCATTGCAAAAACAAGTCTTTTTTCAGTT
GATTTTAAATTTATACGATTTGATACATAACATATTATTCTATATGATAC
GGTAGTCGTATTGGTCGGAAAGTTTTTGGAATTCCTCACAAAAATTTGAT
AAATTAAAGGTTATTTTTGCCTTTTCGTATCAGTAAGCAAATCAATGAAA
ACTGCAATTGCAAACTGGCTGCAATTTGGACGTAGTTATCACACTCCCGA
CAGCTTAAATTTATAATATAAATAAACAAATTTTTAATTAACTGGAATTT
GGATTTCTAAGTTTTAGTACCAGATATGAAATCCAAATGCTCGACTAGAT
TGCAAATCTGTAAGAATTCATGCGACAGATATATTACGACTTTAAATTCG
TGACTTAAAAAAGACATAATTTAAATTAGCACTATTTATTTATTTATTTA
TTGAACATTTGTCAATATTTTGCTTTAATTTATTGTTTTTATAGTAATAA
GTGTCGATTCTTCATAGTTTTGCAATCCTCAATATTTGTTTTCGACCCTC
GTGAGTCCTGGGACGATGACCAATTTACATGTTTTTTTATAAGCATAAAA
AATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000521XLOC_000521Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000882-exon-sc0000005-1575043694:1379181..1379647TCONS_00000882-exon-sc0000005-1575043694:1379181..1379647Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1575043694:1377991..1378130TCONS_00000882-exon-sc0000005-1575043694:1377991..1378130Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1575043694:1377278..1377322TCONS_00000882-exon-sc0000005-1575043694:1377278..1377322Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1575043694:1376937..1377046TCONS_00000882-exon-sc0000005-1575043694:1376937..1377046Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1575043694:1375252..1375543TCONS_00000882-exon-sc0000005-1575043694:1375252..1375543Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1575043694:1373445..1373703TCONS_00000882-exon-sc0000005-1575043694:1373445..1373703Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1575043694:1369793..1372175TCONS_00000882-exon-sc0000005-1575043694:1369793..1372175Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1510915933:1379181..1379647TCONS_00000882-exon-sc0000005-1510915933:1379181..1379647Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1510915933:1377991..1378130TCONS_00000882-exon-sc0000005-1510915933:1377991..1378130Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1510915933:1377278..1377322TCONS_00000882-exon-sc0000005-1510915933:1377278..1377322Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1510915933:1376937..1377046TCONS_00000882-exon-sc0000005-1510915933:1376937..1377046Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1510915933:1375252..1375543TCONS_00000882-exon-sc0000005-1510915933:1375252..1375543Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1510915933:1373445..1373703TCONS_00000882-exon-sc0000005-1510915933:1373445..1373703Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1510915933:1369793..1372175TCONS_00000882-exon-sc0000005-1510915933:1369793..1372175Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1491911889:1379181..1379647TCONS_00000882-exon-sc0000005-1491911889:1379181..1379647Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1491911889:1377991..1378130TCONS_00000882-exon-sc0000005-1491911889:1377991..1378130Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1491911889:1377278..1377322TCONS_00000882-exon-sc0000005-1491911889:1377278..1377322Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1491911889:1376937..1377046TCONS_00000882-exon-sc0000005-1491911889:1376937..1377046Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1491911889:1375252..1375543TCONS_00000882-exon-sc0000005-1491911889:1375252..1375543Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1491911889:1373445..1373703TCONS_00000882-exon-sc0000005-1491911889:1373445..1373703Clytia hemisphaericaexon
TCONS_00000882-exon-sc0000005-1491911889:1369793..1372175TCONS_00000882-exon-sc0000005-1491911889:1369793..1372175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1369793..1379647 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0896817	0.0708885	0	0	0	0	3.2408	3.18904	2.64907	2.27555	2.42453	2.1454	0.650755	0.649004	0	0.0235237	0.0777722	0.820976	1.37951	2.92179	1.4857	0.895536	0.602901	0.812793	1.06735	2.63594	0	0	0	0
Blast
[Close]
BLAST of TCONS_00000882 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5)

HSP 1 Score: 207.608 bits (527), Expect = 6.183e-57
Identity = 144/498 (28.92%), Postives = 245/498 (49.20%), Query Frame = 2 
Query:  485 EGEQRLLKYL-KNFSVNSRPVNISSTAVYVNVTMEIVRLDAVSEKGQSVRMKLHINYLWRNPYLVWNPLNYKGVSEVILPEGEIWIPPIRLFNEASKTQGEYNEDNHARTVLLTNDGNCSLTYAQFFKSTCEIDVSDFPFDQQYCDMTFGSWSMDERLLQLRAVKEEAISEQLYKENGEWHLTEATLKTHDVRYPIHRHKHSTIKLSILIKRKYIFFIMNLVVPCALIACMIFLVFVLPAKSGERISLGITVMLSMAIFQELSSEKLPSSSDNYPLLGVYYTTSMFEIGIALVMNCFILNVYYRNYE---MQPWMRRLLFDKLARLVRIDIP-----HTRTQHYIDRMSTG--QFRELNPXXXXXXXXXXXXXXXIDGESAL-----GNGNGEMSYFPKSTLH-REDTQTIQRKTKKFSVNQNGSSSDLTYTKSNLSAKISLSLSSDPSTRIEERKLLGEDWKTAARILDR-CMLAIAISVGVISALTIFMQAARFRE 1924
            E +++L K L KN++   RPV   S  + V  ++ ++++  V EK Q +   + +   W + YL WN   Y GV  V  P+G+IW P I L+N A +    ++   H   VL+ + G+C       FKS+C IDV  FPFD Q+C + FGSWS     L L+ ++E  IS   Y  NGEW L     K  +  Y   +  +  +  ++ ++R+ +++ +NL++PC LI+ +  LVF+LPA SGE+ISLGITV+LS+ +F  L +E +P++SD+ PL+  Y+ ++M  +G+++V+   +L  ++ + +   M  W R +L +  A  +R+  P         QH   R S    +   + P   +  N        +DG   +     G   G M+  P    H     Q  +       + +     ++ Y  +    +             +E + +  +WK AA ++DR C++A ++   +I  + I M A  F E
Sbjct:   24 EFQRKLYKELVKNYNPLERPVANDSQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNSADE---RFDATFHT-NVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQ-MQEADISG--YIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRPACQHKQRRCSLASVEMSAVAPPPASNGNLLYIGFRGLDGVHCVPTPDSGVVCGRMACSPTHDEHLLHGGQPPEGDPDLAKILE-----EVRYIANRFRCQ-------------DESEAVCSEWKFAACVVDRLCLMAFSV-FTIICTIGILMSAPNFVE 495
The following BLAST results are available for this feature:
BLAST of TCONS_00000882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA76.183e-5728.92Neuronal acetylcholine receptor subunit alpha-7 OS... [more]
back to top