TCONS_00000872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000872
Unique NameTCONS_00000872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000872 ID=TCONS_00000872|Name=TCONS_00000872|organism=Clytia hemisphaerica|type=transcript|length=2218bp
GCACTCCTTAGCGTTGAGTTTATTTGTTGTAAACTTTCTATCTTTGATAG
ATGCAGGTGTTTTAATAGTCTTTAATGAAACCTCATGGGAACCTCATGAC
AAAGTGACGATAGTTTCCGCAGATTCTCGGATATAAAAGGCAGTAAATTT
GAAGTTGGAGTTTAGAATTTTGCAGATAATGACATCCATTTGGCCACCAG
AACATAGAAGaaacaaaTTATCAACATCAACAACAAGTGCTTTAACCATG
GTCATTAAGAAAGCGTTAGAATCATTCTATCTTTCCGCTGAAGTATTGGA
AAAAATACGGCAAAGTGGACTATACCATGATTCAAAGACCTTCGTCGATA
TGCCACTCAAAGTGGATTACTCAGCCAAACTACAAAAGAAGATATTAGAA
TGTACAGATCCTAAAGATTTGCTTAAAATTCTTCACCGTTATTTCGAACA
GCCAGGAGTCAATGAATTGATGAAAGTCAATTTGGAAATTGATTCCCATC
CAGAACCGAAATTTATCTCCAATATCAAAGATCCTGAATACAAATCATGG
GCTATGCATCTTTGTAAAATATGGAGCAAACTGGTCAGACGTGTTAATCC
AGAATTATTAAATCGCCAAGATAACCACTCACTTATTTACTTAGAAAAAC
CATTTGTCATCCCAGGTGGGCGATTCCGTGAAGTTTATTACTGGGATACA
TACTGGTCAATACTTGGACTCTTACATTCTGAAATGTTTGATATCGTCAA
AGGTATCTTAGAAAACCTATTATCACTAGTCGAGAGATACGGCTTTGTAC
CAAACGGTGGCCGAAAGTATTACGAAAACCGTAGTCAGCCACCATTTTTG
ACATTGATGGTCAAAGCTTATTATGATGTTACTAAAGATATCGACTTTGC
TAAAAGTAGTTTACCAACATTAATGAAGGAACATGATTTTTGGATGGAAC
AAAGATCAGTATTGATTGAGTacaataacaaactatacactATGAATCGT
TATAATGTATCTACCGATCAACCAAGACCGGAATCTTTTAAAGAAGACTT
AGAAACAATGGAAAAAGCTGGTCACCATAACGACAAATCAAAGCAAACAG
AGATTTATTCCAATCTTGCATCAGCAGCAGAAAGTGGTTGGGATTTCTCA
TCAAGATGGTTAAAAGAATCGCACAAACTGGAGACAATTGTTACTCGTGA
TATCGTACCAGTTGATTTGAACTCAGTTCTGTGTGCTGTAGAATTCACTT
TATCAGATCTTCACCAAATAGTTGCCACAGGCGATTACGCTAGccaaaaa
tatagcaaaatggCCAACAAACGTCTTTCAGGTATTGATGAATTATTCTG
GAACGAGCAACATGGATTGTGGTGTGATTTCGATTTACCAAAGAACGAAA
TCTTATCCGAATATTACGCATCAGTTTTTTTCCCAATCTGGATTTTCTCA
ACATATGCAGCTCAACCATCAGCCAATTTAGGTCGAGCATTTGAGAAAGT
TAAAAGTCTTGGTGTTCTAAATTATTGTGGTGGTCTACCAACATCTTTAA
TTGAATCTGGTCAACAATGGGATTTTCCAAATGTTTGGCCACCTCTTCAG
CACATTGCTGTAGAATCTCTTGATCCAAGAACCAACCAAATGTCATCATC
AGAGCAACAAGAAGCTGGGAAAAATCTCGCTAAACAGTTCATAGAAAACG
CCTATATTTCTTGGAAGACCACTGGTCACATGTACGAAAAATACGATGTG
AGAGAATATGGTAAAGCTGGACATGGAGGTGAATATGATGTCCAGGAAGG
CTTTGGATGGACAAATGGTGTCATTCTTGATTTCCTTTCTAAATACGGAC
ATGAACTTTCTGCACCTAAAATTAATACTGGTAAAGAgtgatgtttttga
attttaagactATTATTTTAAACTTCATTATTTTGACATAAcactgtaaa
tattttgaatttttctaaatttcatatCTTTAGCGCTTTTAACTTTTCGT
AACGAACTTGAGGAGTGCTTCCAGACAGGTTATTTTCGATGCTCAGAATT
TCTTATAATCTGAATGATTTCCCTTTAAAGAGTGTCTTTGATAATGAAAT
TCATATGTGCATgtaattatttattttaaaaatattatttaaaagaAGTC
AGTTTGTAAAacgattttatatattttattataAAACAAGAACAATACAA
ATGTATAAAGTAAAAAGC
Run BLAST on NCBI

transcript from alignment at sc0000005:1213691..1218902-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000872 ID=TCONS_00000872|Name=TCONS_00000872|organism=Clytia hemisphaerica|type=transcript|length=5212bp|location=Sequence derived from alignment at sc0000005:1213691..1218902- (Clytia hemisphaerica)
GCACTCCTTAGCGTTGAGTTTATTTGTTGTAAACTTTCTATCTTTGATAG ATGCAGGTGTTTTAATAGTCTTTAATGAAACCTCATGGGAACCTCATGAC AAAGTGACGATAGTTTCCGCAGATTCTCGGATATAAAAGGCAGTAAATTT GAAGTTGGAGTTTAGAATTTTGCAGATAATGACATCCATTTGGCCACCAG AACATAGAAGGTAGGATCTTCCTCGGCTTAAACATTGATTTCTCTAATAT CCTTAGTTACGGCATGGACTGGACATCTATCTTTTATTGTCTCTTTGAAG CGTAGCTTCGTTGCCGCCTGTATTTTAAAATTGGTATAATAAATCCAACA ATATTCCGTCATAATTTTATTTCTTTGAATTGTTTAGGTAAAATGATTGA TAGAGTTTGAACATTACTCCTAATGCACAAAAAAATTATTTTCAATTTTT TTCACGAGTTTGCAATATATTTTATCAACATTTTCAAGTCTGAAATGCAG AATTTCAACTGCGTGTATACTTTTGAATCCCTTTTGTCACTCCAATAATT TTTTTTATGACTTGAAAATAGCTTGCCAAAGTTGAAAGCCTATGTCATAA GAATACCTTAAGGGAAGAAATTTTCGCGAGAAGAAATTTTCGCGGAATTT AATTTCGCGAATGAGCCGATTTTAAAAGTTTCACGGGATTTAATTTCGCG ATTGAGAAATTTCAAAAGAATTTTTTTTACAGAGAAAATGTTTTTCATAT TTTTCCTCGATTTCAAGACATATTTCAGTCACATTAACAATATTTAACAA CAAAATAATAACATCAAATATGAATGTTTCTATGTTAAGTCATGATTAAA CTTCATCGCCGTCTTTTTCCTCCAAAAAATCGAATTTCGCGGAATTTAAT TTCGCGATTTAGCCATTTTGGTGTGTTTCGCGGNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNGAATTTCAACTGCGTGTATACTTTTGAATC CCTTTTGTCACTCCAATAATTTTTTTTTATGACTTGAAAAAAATAGCTTG CCAAAGTTGAGTGCCTGTGTCATAAAAATATCGAAATTAGAATGTGACAC TCTCTAAAATTATTAGACACTTTTAAGTCAAAATTTGGAAATATTAGTCG GAGTTTTGAGAAGCTGACGATGATTTTGCCTCTGTTATCTTTGTTATGAT ATAGATAAAAGACTTGAGAAAAGTAGAACAACGGAGACTTTTGTCGAAGT TTTGACGTTGTTAGCAAGGTATTCCCAAGAGGTATATCATCAAAACTTAT TGTTTCATTTGATGATTTTAACGAGGCGGCAACGAAGCTAGCAGTGTTAT CTTTAAAAAGACAAAGGAGATGGCCCAGTCGTTTATATGTTCATGGTTAC GGTTAAGCTTTTACTAATTAGCTGTATTACCTCAAGGTACTGTTTAAATT GCCTTTGATTGACGATAAAAGTCGAAGATTTGCCTCCTCGATTGTTTAAA TGGCTATTAACGATGTTTGCTAGCAATAAATTAGATTTTAATGACTTTTA TTGGCTATTATAGTCGTTTTTCAATTCGAAAAATTTTTCGTCTAGATAAA TAAATTTACATTTATTTCAAACAAGCGCCTTTTTCGAGGCGCTGCTCAGC TTATGACGTTTTCACGTTTTTCTGAGAATAGATATGTAGATTTTTTGTCA AGTCATTCCAGGACATAACAAGGCAAAATCACACCCACACTCAATCGAGA TAGCTGAAACACACCTCCTGAAAATCCCTCTTCATTCTTATGCATCATTT CAACTGCGTCATATTATCAAAATTTCCTTTCCAATTTTTTGGCTGGAATT CACAGTCTATTATAAGAACCCAACTATTACTTTACATATTTTGAATTCAT TCTCTTACATTGTTTGGTAATGACTCTTAAATGTTATATTGATTTTGTGG TCTAATAACAATCAAGAGATTTCTAAAAAAATTTAAATATATCTTCAGAC TTTTATAACCCAAGCAAGATGTTATGAAATCTTTTCTAGTTGAAACTATG CCTATAAAATTAGCACGATGACAGTATGACATTGCATAAATTGTGTCATA CGTCACGTTCTTTTCAATCGAAAAATTTCTTACCTATGTGATCAATAATT GAGATAAATGAAACAGCAATATATAAAAGTATAAAACCCACGAGCTTTGG TAGCCTAACGTGATGTATTAACACATTTCAGAACTTTATTACGCATGCTC TTTATCAAACAATGCAAAAAGAAAAAGTGCCTATTACAGTTATTTATCAA AATCCATTTTACTATACCGGTTAAAGCTATAAATAAGGAAGCAATAGATT GTAAAACCTCAAAAACACCTCTACCATACCTACAGGTCTTATATAAACCT AGAAATAGTTTGGTATATATTCAAACGAAACGATTGATTTGCCATAGGCT CTTTAGTTTGTGAGAATGGAGGAATAATGAAAAGAACCTTTTGCAAATAA ACTGGATAAAAGAGTGGATATCTATGATTTGTTCTGCTTTAGGCCTGTCA ATAGATATATTTTGATGGTAATTTGAGGTATTAAGTGTTAGATATATGCG TTAGTTGATTTTACAAGGGGGTTGCGAATGTTTCTGGAAGAGATTAGATT CAGTGTAGAATGGAATTAGCAAGGTCAGCTTTAAAAAGCACTAAATATTT GGTGTGTTGATTAATATTCTATGTTCGGGGTTAATGTGTTTTGGTGTGCG AATTAGTCTAAGATCAATTTCCCCCAGAGTTACCGTAAGATTGATTTACT CAATATTTACAAATTACGAGGTTCCTGAATGTATTTTCCTAGTACGTTTG TTATGGAGATATCTCTTAAACTTATTTTTTGCTTTCATTTTTTAGAAACA AATTATCAACATCAACAACAAGTGCTTTAACCATGGTCATTAAGAAAGCG TTAGAATCATTCTATCTTTCCGCTGAAGTATTGGAAAAAATACGGCAAAG TGGACTATACCATGATTCAAAGACCTTCGTCGATATGCCACTCAAAGTGG ATTACTCAGCCAAACTACAAAAGAAGATATTAGAATGTACAGATCCTAAA GATTTGCTTAAAATTCTTCACCGTTATTTCGAACAGCCAGGAGTCAATGA ATTGATGAAAGTCAATTTGGAAATTGATTCCCATCCAGAACCGAAATTTA TCTCCAATATCAAAGATCCTGAATACAAATCATGGGCTATGCATCTTTGT AAAATATGGAGCAAACTGGTCAGACGTGTTAATCCAGAATTATTAAATCG CCAAGATAACCACTCACTTATTTACTTAGAAAAACCATTTGTCATCCCAG GTGGGCGATTCCGTGAAGTTTATTACTGGGATACATACTGGTCAATACTT GGACTCTTACATTCTGAAATGTTTGATATCGTCAAAGGTATCTTAGAAAA CCTATTATCACTAGTCGAGAGATACGGCTTTGTACCAAACGGTGGCCGAA AGTATTACGAAAACCGTAGTCAGCCACCATTTTTGACATTGATGGTCAAA GCTTATTATGATGTTACTAAAGATATCGACTTTGCTAAAAGTAGTTTACC AACATTAATGAAGGAACATGATTTTTGGATGGAACAAAGATCAGTATTGA TTGAGTACAATAACAAACTATACACTATGAATCGTTATAATGTATCTACC GATCAACCAAGACCGGAATCTTTTAAAGAAGACTTAGAAACAATGGAAAA AGCTGGTCACCATAACGACAAATCAAAGCAAACAGAGATTTATTCCAATC TTGCATCAGCAGCAGAAAGTGGTTGGGATTTCTCATCAAGGTAAGTGTCT AAATGAATTCTTTAGAACTTTTCTTTCTATCTCTATAATTTTTTCTAAAA TTTGATTTAATAGTTTAGTACTACCCTGCATCTCATGCTTTTGTCGATAC TAGATTTTAGTTAAGTTTTTAAACAAGTTAAACCTTTTTTGCCGGGGATT TGTTTTGTTTTAGTTGAAAATCTTGTGTTTGCAATGATGGACTTGACTGA ATTCATGTTGTTTTAAAATGACTCATCTTTTCCCTTTTCCTATTTACAGA TGGTTAAAAGAATCGCACAAACTGGAGACAATTGTTACTCGTGATATCGT ACCAGTTGATTTGAACTCAGTTCTGTGTGCTGTAGAATTCACTTTATCAG ATCTTCACCAAATAGTTGCCACAGGCGATTACGCTAGCCAAAAATATAGC AAAATGGCCAACAAACGTCTTTCAGGTATTGATGAATTATTCTGGAACGA GCAACATGGATTGTGGTGTGATTTCGATTTACCAAAGAACGAAATCTTAT CCGAATATTACGCATCAGTTTTTTTCCCAATCTGGATTTTCTCAACATAT GCAGCTCAACCATCAGCCAATTTAGGTCGAGCATTTGAGAAAGTTAAAAG TCTTGGTGTTCTAAATTATTGTGGTGGTCTACCAACATCTTTAATTGAAT CTGGTCAACAATGGGATTTTCCAAATGTTTGGCCACCTCTTCAGCACATT GCTGTAGAATCTCTTGATCCAAGAACCAACCAAATGTCATCATCAGAGCA ACAAGAAGCTGGGAAAAATCTCGCTAAACAGTTCATAGAAAACGCCTATA TTTCTTGGAAGACCACTGGTCACATGTACGAAAAATACGATGTGAGAGAA TATGGTAAAGCTGGACATGGAGGTGAATATGATGTCCAGGAAGGCTTTGG ATGGACAAATGGTGTCATTCTTGATTTCCTTTCTAAATACGGACATGAAC TTTCTGCACCTAAAATTAATACTGGTAAAGAGTGATGTTTTTGAATTTTA AGACTATTATTTTAAACTTCATTATTTTGACATAACACTGTAAATATTTT GAATTTTTCTAAATTTCATATCTTTAGCGCTTTTAACTTTTCGTAACGAA CTTGAGGAGTGCTTCCAGACAGGTTATTTTCGATGCTCAGAATTTCTTAT AATCTGAATGATTTCCCTTTAAAGAGTGTCTTTGATAATGAAATTCATAT GTGCATGTAATTATTTATTTTAAAAATATTATTTAAAAGAAGTCAGTTTG TAAAACGATTTTATATATTTTATTATAAAACAAGAACAATACAAATGTAT AAAGTAAAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000516XLOC_000516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000872-exon-sc0000005-1575043694:1218693..1218902TCONS_00000872-exon-sc0000005-1575043694:1218693..1218902Clytia hemisphaericaexon
TCONS_00000872-exon-sc0000005-1575043694:1215013..1215957TCONS_00000872-exon-sc0000005-1575043694:1215013..1215957Clytia hemisphaericaexon
TCONS_00000872-exon-sc0000005-1575043694:1213691..1214753TCONS_00000872-exon-sc0000005-1575043694:1213691..1214753Clytia hemisphaericaexon
TCONS_00000872-exon-sc0000005-1510915933:1218693..1218902TCONS_00000872-exon-sc0000005-1510915933:1218693..1218902Clytia hemisphaericaexon
TCONS_00000872-exon-sc0000005-1510915933:1215013..1215957TCONS_00000872-exon-sc0000005-1510915933:1215013..1215957Clytia hemisphaericaexon
TCONS_00000872-exon-sc0000005-1510915933:1213691..1214753TCONS_00000872-exon-sc0000005-1510915933:1213691..1214753Clytia hemisphaericaexon
TCONS_00000872-exon-sc0000005-1491911889:1218693..1218902TCONS_00000872-exon-sc0000005-1491911889:1218693..1218902Clytia hemisphaericaexon
TCONS_00000872-exon-sc0000005-1491911889:1215013..1215957TCONS_00000872-exon-sc0000005-1491911889:1215013..1215957Clytia hemisphaericaexon
TCONS_00000872-exon-sc0000005-1491911889:1213691..1214753TCONS_00000872-exon-sc0000005-1491911889:1213691..1214753Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:1213691..1218902 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0419 0.987406 0.00159646 0.568655 1.47285 0.842498 0.855764 1.16249 0.6585 1.92747 0 0 1.45855 4.31941 3.55656 0 1.27219 0.728851 11.8046 17.2353 6.81665 7.12959 0.95944 0.865842 2.80776 6.00892 2.2783 3.3949 4.01336e-07 1.87256
Blast
BLAST of TCONS_00000872 vs. Swiss-Prot (Human)
Match: TREA (Trehalase OS=Homo sapiens GN=TREH PE=1 SV=2)

HSP 1 Score: 384.415 bits (986), Expect = 3.437e-123
Identity = 213/539 (39.52%), Postives = 312/539 (57.88%), Query Frame = 2
Query:  275 FYLSAEVLEKIRQSGLYHDSKTFVDMPLKVDYSAKLQKKILECTD-----PKDLLK-ILHRYFEQPGVNELMKVNLEIDSHPEPKFISNIKDPEYKSWAMHLCKIWSKLVRRVNPELLNRQDNHSLIYLEKPFVIPGGRFREVYYWDTYWSILGLLHSEMFDIVKGILENLLSLVERYGFVPNGGRKYYENRSQPPFLTLMVKAYYDVTKDIDFAKSSLPTLMKEHDFWMEQRSVLIEYNNKLYTMNRYNVSTDQPRPESFKEDLETMEKAGHHNDKSKQTEIYSNLASAAESGWDFSSRWL---KESHKLETIVTRDIVPVDLNSVLCAVEFTLSDLHQIVATGDYASQKYSKMANKRLSGIDELFWNEQHGLWCDFDLPKNEILSEYYASVFFPIWIFSTYAAQPSANLGRAFEKVKSLGVLNYCGGLPTSLIESGQQWDFPNVWPPLQHIAVESLDPRTNQMSSSEQQEAGKNLAKQFIENAYISWKTTGHMYEKYDVREYGKAGHGGEYDVQEGFGWTNGVILDFLSKYGHELSA 1864
             Y   E+L +++ + LY D K FVDMPL +     LQ       D     P++ L+  +H +F+  G  + ++     D    P+F+  I D + ++WA  L ++W KL +++ PE+L+  +  SLIY E PF++PGGRF E YYWD+YW + GLL SEM + VKG+L+N L LV+ YG VPNGGR YY  RSQPP LTLM+  Y   T D  F + ++ TL  E DFW + R+V +    K Y +NRY V    PRPES+ +D+E  +     + ++    +++ L + AESGWDFSSRWL      + L  I T  +VPVDLN+ LC  E  +S+ +  +   D  + KY  + ++RL+ ++ + W+EQ G W D+DL K +   E+Y S   P+W    ++    A+  +A + ++   +L Y  G+PTSL ++GQQWDFPN W PLQ + +  L     +      QE    LA+ +I   +  +     MYEKYDV   G+ G GGEY+VQEGFGWTNGV+L  L +YG  L++
Sbjct:   32 IYCHGELLNQVQMAKLYQDDKQFVDMPLSIAPEQVLQTFTELSRDHNHSIPREQLQAFVHEHFQAKG--QELQPWTPADWKDSPQFLQKISDAKLRAWAGQLHQLWKKLGKKMKPEVLSHPERFSLIYSEHPFIVPGGRFVEFYYWDSYWVMEGLLLSEMAETVKGMLQNFLDLVKTYGHVPNGGRVYYLQRSQPPLLTLMMDCYLTHTNDTAFLQENIETLALELDFWTKNRTVSVSLEGKNYLLNRYYVPYGGPRPESYSKDVELADTLPEGDREA----LWAELKAGAESGWDFSSRWLIGGPNPNSLSGIRTSKLVPVDLNAFLCQAEELMSNFYSRLGN-DSQATKYRILRSQRLAALNTVLWDEQTGAWFDYDLEKKKKNREFYPSNLTPLWA-GCFSDPGVAD--KALKYLEDNRILTYQYGIPTSLQKTGQQWDFPNAWAPLQDLVIRGL----AKAPLRRAQEVAFQLAQNWIRTNFDVYSQKSAMYEKYDVSNGGQPGGGGEYEVQEGFGWTNGVVLMLLDRYGDRLTS 556          
The following BLAST results are available for this feature:
BLAST of TCONS_00000872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TREA3.437e-12339.52Trehalase OS=Homo sapiens GN=TREH PE=1 SV=2[more]
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